本文整理匯總了Python中Helper.Helper.getSampleName方法的典型用法代碼示例。如果您正苦於以下問題：Python Helper.getSampleName方法的具體用法？Python Helper.getSampleName怎麽用？Python Helper.getSampleName使用的例子？那麽, 這裏精選的方法代碼示例或許可以為您提供幫助。您也可以進一步了解該方法所在類Helper.Helper的用法示例。
在下文中一共展示了Helper.getSampleName方法的1個代碼示例，這些例子默認根據受歡迎程度排序。您可以為喜歡或者感覺有用的代碼點讚，您的評價將有助於係統推薦出更棒的Python代碼示例。
示例1: newAssay
# 需要導入模塊: from Helper import Helper [as 別名]
# 或者: from Helper.Helper import getSampleName [as 別名]
def newAssay(self):
'''
Function wich starts a new analysis
'''
inputTab = self.view.tabMainWindow.widget(0)
#get Parameters
parameters=Parameters(inputTab)
if parameters.paired==True:
#fastqs=inputTab.dropList.dropFirstTwoItems()
fastqs = inputTab.dropList.dropFirstItem()
if fastqs[0]!=None:
if not str(fastqs[0].text()).endswith(".bam"):
fastqs+=inputTab.dropList.dropFirstItem()
else:
fastqs = inputTab.dropList.dropFirstItem()
"""
check if droplist returned a value
"""
if parameters.paired==True:
if fastqs[-1] == None:
QtGui.QMessageBox.information(self.view,"Warning","Warning:\nNot enough Sequencing Files for paired-end sequencing!!!\n\nDrop FASTQ-Files to the drop area!")
return
if fastqs[0] == None:
QtGui.QMessageBox.information(self.view,"Warning","Warning:\nNo Sequencing Files found!!!\n\nDrop FASTQ-Files to the drop area!")
return
sampleName = Helper.getSampleName(str(fastqs[0].text()))
if sampleName == None:
QtGui.QMessageBox.information(self.view,"Warning","Warning:\nNo valid Sequencing File!!!\n\nDrop FASTQ-Files to the drop area!")
return
fastqFiles=[]
for fastq in fastqs:
fastqFiles.append(str(fastq.text()))
runTab = RunTab(self)
#initialize new Thread with new assay
try:
assay = RnaEdit(fastqFiles, parameters,runTab.commandBox)
except Exception as err:
QtGui.QMessageBox.information(self.view,"Error", str(err)+"Cannot start Analysis!")
Helper.error(str(err) + "\n creating rnaEditor Object Failed!", textField=runTab.commandBox)
currentIndex = self.view.tabMainWindow.count()
# self.view.tabMainWindow.addTab(self.runTab, "Analysis"+ str(Helper.assayCount))
self.view.tabMainWindow.addTab(runTab, sampleName + " " + str(currentIndex))
Helper.runningThreads.append(assay)
assay.start()
self.view.connect(assay, QtCore.SIGNAL("taskDone"), self.openAnalysis)