Python ProjectManager.doRunGenesis方法代码示例

本文整理汇总了Python中ucl.physiol.neuroconstruct.project.ProjectManager.doRunGenesis方法的典型用法代码示例。如果您正苦于以下问题：Python ProjectManager.doRunGenesis方法的具体用法？Python ProjectManager.doRunGenesis怎么用？Python ProjectManager.doRunGenesis使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类ucl.physiol.neuroconstruct.project.ProjectManager的用法示例。

在下文中一共展示了ProjectManager.doRunGenesis方法的3个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。

示例1: generateF_ICurve

# 需要导入模块: from ucl.physiol.neuroconstruct.project import ProjectManager [as 别名]
# 或者: from ucl.physiol.neuroconstruct.project.ProjectManager import doRunGenesis [as 别名]

#.........这里部分代码省略.........

							print "Next stim: "+ str(stim)

							self.myProject.simulationParameters.setReference(simRef)

							if simulator == "NEURON":
									self.myProject.neuronFileManager.generateTheNeuronFiles(simConfig,
																							None,
																							NeuronFileManager.RUN_HOC,
																							self.simulatorSeed)

									print "Generated NEURON files for: "+simRef

									compileProcess = ProcessManager(self.myProject.neuronFileManager.getMainHocFile())

									compileSuccess = compileProcess.compileFileWithNeuron(0,0)

									print "Compiled NEURON files for: "+simRef

									if compileSuccess:
													pm.doRunNeuron(simConfig)
													print "Set running simulation: "+simRef
													self.simsRunning.append(simRef)

							if simulator == "GENESIS":
									compartmentalisation = GenesisCompartmentalisation()

									self.myProject.genesisFileManager.generateTheGenesisFiles(simConfig,
																							None,
																							compartmentalisation,
																							self.simulatorSeed)
									print "Generated GENESIS files for: "+simRef

									pm.doRunGenesis(simConfig)
									print "Set running simulation: "+simRef
									self.simsRunning.append(simRef)

							time.sleep(1) # Wait for sim to be kicked off
							simReferences[simRef] = stimAmp
							stimAmp = stimAmp +stimAmpInc

					print
					print "Finished running "+str(len(simReferences))+" simulations for project "+ projFile.getAbsolutePath()
					print "These can be loaded and replayed in the previous simulation browser in the GUI"
					print

			while (len(self.simsRunning)>0):
					print "Sims currently running: "+str(self.simsRunning)
					print "Waiting..."
					time.sleep(4) # wait a while...
					self.updateSimsRunning()

			#simReferences = {'PySim_0.3':0.3,'PySim_0.4':0.4,'PySim_0.5':0.5}

			plotFrameFI = PlotManager.getPlotterFrame("F-I curve from project: "+str(self.myProject.getProjectFile())+" on "+simulator , 1, 1)
			plotFrameVolts = PlotManager.getPlotterFrame("VoltageTraces from project: "+str(self.myProject.getProjectFile())+" on "+simulator , 1, 1)

			plotFrameFI.setViewMode(PlotCanvas.INCLUDE_ORIGIN_VIEW)

			info = "F-I curve for Simulation Configuration: "+str(simConfig)

			dataSet = DataSet(info, info, "nA", "Hz", "Current injected", "Firing frequency")
			dataSet.setGraphFormat(PlotCanvas.USE_CIRCLES_FOR_PLOT)

			simList = simReferences.keys()
			simList.sort()

开发者ID:pgleeson，项目名称:TestArea，代码行数:70，代码来源:GenerateF_ICurve.py

示例2: make_fF_Curve

# 需要导入模块: from ucl.physiol.neuroconstruct.project import ProjectManager [as 别名]
# 或者: from ucl.physiol.neuroconstruct.project.ProjectManager import doRunGenesis [as 别名]

#.........这里部分代码省略.........
					
							print "Next Train: "+ str(currentTrain)

							self.myProject.simulationParameters.setReference(simRef)

							if simulator == "NEURON":
									self.myProject.neuronFileManager.generateTheNeuronFiles(simConfig,
																							None,
																							NeuronFileManager.RUN_HOC,
																							self.simulatorSeed)

									print "Generated NEURON files for: "+simRef

									compileProcess = ProcessManager(self.myProject.neuronFileManager.getMainHocFile())

									compileSuccess = compileProcess.compileFileWithNeuron(0,0)

									print "Compiled NEURON files for: "+simRef

									if compileSuccess:
													pm.doRunNeuron(simConfig)
													print "Set running simulation: "+simRef
													self.simsRunning.append(simRef)

							if simulator == "GENESIS":
									compartmentalisation = GenesisCompartmentalisation()

									self.myProject.genesisFileManager.generateTheGenesisFiles(simConfig,
																							None,
																							compartmentalisation,
																							self.simulatorSeed)
									print "Generated GENESIS files for: "+simRef

									pm.doRunGenesis(simConfig)
									print "Set running simulation: "+simRef
									self.simsRunning.append(simRef)

							time.sleep(1) # Wait for sim to be kicked off
							simReferences[simRef] = currentTrain
							currentTrain = currentTrain + 1

					print
					print "Finished running "+str(len(simReferences))+" simulations for project "+ projFile.getAbsolutePath()
					print "These can be loaded and replayed in the previous simulation browser in the GUI"
					print

			while (len(self.simsRunning)>0):
					print "Sims currently running: "+str(self.simsRunning)
					print "Waiting..."
					time.sleep(4) # wait a while...
					self.updateSimsRunning()

			#simReferences = {'PySim_0.3':0.3,'PySim_0.4':0.4,'PySim_0.5':0.5}

			plotFrameFf = PlotManager.getPlotterFrame("F-f curve from project: "+str(self.myProject.getProjectFile())+" on "+simulator , 1, 1)

			plotFrameVolts = PlotManager.getPlotterFrame("VoltageTraces from project: "+str(self.myProject.getProjectFile())+" on "+simulator , 1, 1)

			plotFrameFf.setViewMode(PlotCanvas.INCLUDE_ORIGIN_VIEW)

			info = "F-f curve for Simulation Configuration: "+str(simConfig)

			dataSet = DataSet(info, info, "Hz", "Hz", "Input_Freq", "Output_Freq")
			dataSet.setGraphFormat(PlotCanvas.USE_CIRCLES_FOR_PLOT)

			simList = simReferences.keys()

开发者ID:pgleeson，项目名称:TestArea，代码行数:70，代码来源:Generate_fF_Curve.py

示例3: generateV_ICurve

# 需要导入模块: from ucl.physiol.neuroconstruct.project import ProjectManager [as 别名]
# 或者: from ucl.physiol.neuroconstruct.project.ProjectManager import doRunGenesis [as 别名]

#.........这里部分代码省略.........
					
							print "Next stim: "+ str(stimAmp)

							self.myProject.simulationParameters.setReference(simRef)

							if simulator == "NEURON":
									self.myProject.neuronFileManager.generateTheNeuronFiles(simConfig,
																							None,
																							NeuronFileManager.RUN_HOC,
																							self.simulatorSeed)

									print "Generated NEURON files for: "+simRef

									compileProcess = ProcessManager(self.myProject.neuronFileManager.getMainHocFile())

									compileSuccess = compileProcess.compileFileWithNeuron(0,0)

									print "Compiled NEURON files for: "+simRef

									if compileSuccess:
													pm.doRunNeuron(simConfig)
													print "Set running simulation: "+simRef
													self.simsRunning.append(simRef)

							if simulator == "GENESIS":
									compartmentalisation = GenesisCompartmentalisation()

									self.myProject.genesisFileManager.generateTheGenesisFiles(simConfig,
																							None,
																							compartmentalisation,
																							self.simulatorSeed)
									print "Generated GENESIS files for: "+simRef

									pm.doRunGenesis(simConfig)
									print "Set running simulation: "+simRef
									self.simsRunning.append(simRef)

							time.sleep(1) # Wait for sim to be kicked off
							simReferences[simRef] = stimAmp
							stimAmp = stimAmp +stimAmpInc

					print
					print "Finished running "+str(len(simReferences))+" simulations for project "+ projFile.getAbsolutePath()
					print "These can be loaded and replayed in the previous simulation browser in the GUI"
					print

			while (len(self.simsRunning)>0):
					print "Sims currently running: "+str(self.simsRunning)
					print "Waiting..."
					time.sleep(4) # wait a while...
					self.updateSimsRunning()

			#simReferences = {'PySim_0.3':0.3,'PySim_0.4':0.4,'PySim_0.5':0.5}

			plotFrameVI = PlotManager.getPlotterFrame("V-I curve from project: "+str(self.myProject.getProjectFile())+" on "+simulator , 1, 1)


			plotFrameVI.setViewMode(PlotCanvas.INCLUDE_ORIGIN_VIEW)

			info = "V-I curve for Simulation Configuration: "+str(simConfig)

			dataSet = DataSet(info, info, "mV", "nA", "Voltage", "Current")
			dataSet.setGraphFormat(PlotCanvas.USE_CIRCLES_FOR_PLOT)

			simList = simReferences.keys()
			simList.sort()

开发者ID:pgleeson，项目名称:TestArea，代码行数:70，代码来源:GenerateV_ICurve.py

注：本文中的ucl.physiol.neuroconstruct.project.ProjectManager.doRunGenesis方法示例由纯净天空整理自Github/MSDocs等开源代码及文档管理平台，相关代码片段筛选自各路编程大神贡献的开源项目，源码版权归原作者所有，传播和使用请参考对应项目的License；未经允许，请勿转载。