本文整理汇总了Python中synapseclient.File.alignment_workflow_source_url方法的典型用法代码示例。如果您正苦于以下问题:Python File.alignment_workflow_source_url方法的具体用法?Python File.alignment_workflow_source_url怎么用?Python File.alignment_workflow_source_url使用的例子?那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类synapseclient.File
的用法示例。
在下文中一共展示了File.alignment_workflow_source_url方法的1个代码示例,这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞,您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: Activity
# 需要导入模块: from synapseclient import File [as 别名]
# 或者: from synapseclient.File import alignment_workflow_source_url [as 别名]
provenance = Activity(name=meta_data['activity'],
desciption=meta_data['description'],
used = meta_data['used']
exectuted = meta_data['used']
)
#prov = syn.store(prov)
name = of.path.basename(input_path)
#Add metadata to files to be uploaded
f = File(input_path, name = name, parentId=DST_FOLDER)
f.dataType = meta_data['dataType']
f.fileType = meta_data['dataType']
f.variant_workflow = meta_data['workflow']
f.variant_workflow_version = meta_data['workflowVersion']
f.call_type = call_type
f.reference_build = meta_data['referenceBuild']
f.center_name = meta_data['center_name']
f.file_md5 = synapseclient.utils.md5_for_file(input_path)
f.study = 'PCAWG 2.0'
f.submitter_donor_id = meta_data['donor_id']
f.alignment_workflow_name='Workflow_Bundle_BWA (UCSC Implementation)'
f.alignment_workflow_source_url='https://github.com/kellrott/tcga_realign'
f.alignment_workflow_version='2.6.0'
#Store metadata and file to Synapse
#f = syn.store(f, activity = provenance)
#Add Description
#wiki = synapseclient.Wiki(TITLE, f, DESCRIPTION)
#wiki = syn.store(wiki)