本文整理汇总了Python中six.moves.StringIO.readlines方法的典型用法代码示例。如果您正苦于以下问题：Python StringIO.readlines方法的具体用法？Python StringIO.readlines怎么用？Python StringIO.readlines使用的例子？那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类six.moves.StringIO的用法示例。
在下文中一共展示了StringIO.readlines方法的5个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: test_split_at_with_header
# 需要导入模块: from six.moves import StringIO [as 别名]
# 或者: from six.moves.StringIO import readlines [as 别名]
def test_split_at_with_header(self):
source = StringIO("""@header1
AGCTTTTT
+
@IIIB+++
@header2
AGCTTTTT
+
IIIIB+++
""")
target1 = StringIO()
target2 = StringIO()
srf2fastq.convert_single_to_two_fastq(source, target1, target2, header="foo_")
target1.seek(0)
lines1 = target1.readlines()
self.assertEqual(len(lines1),8)
self.assertEqual(lines1[0].rstrip(), '@foo_header1/1')
self.assertEqual(lines1[1].rstrip(), 'AGCT')
self.assertEqual(lines1[2].rstrip(), '+')
self.assertEqual(lines1[3].rstrip(), '@III')
target2.seek(0)
lines2 = target2.readlines()
self.assertEqual(len(lines2),8)
self.assertEqual(lines2[0].rstrip(), '@foo_header1/2')
self.assertEqual(lines2[1].rstrip(), 'TTTT')
self.assertEqual(lines2[2].rstrip(), '+')
self.assertEqual(lines2[3].rstrip(), 'B+++')示例2: test_split_good
# 需要导入模块: from six.moves import StringIO [as 别名]
# 或者: from six.moves.StringIO import readlines [as 别名]
def test_split_good(self):
source = StringIO("""@header
AGCTTTTT
+
IIIIB+++
""")
target1 = StringIO()
target2 = StringIO()
srf2fastq.convert_single_to_two_fastq(source, target1, target2)
target1.seek(0)
lines1 = target1.readlines()
self.assertEqual(len(lines1),4)
self.assertEqual(lines1[0].rstrip(), '@header/1')
self.assertEqual(lines1[1].rstrip(), 'AGCT')
self.assertEqual(lines1[2].rstrip(), '+')
self.assertEqual(lines1[3].rstrip(), 'IIII')
target2.seek(0)
lines2 = target2.readlines()
self.assertEqual(len(lines2),4)
self.assertEqual(lines2[0].rstrip(), '@header/2')
self.assertEqual(lines2[1].rstrip(), 'TTTT')
self.assertEqual(lines2[2].rstrip(), '+')
self.assertEqual(lines2[3].rstrip(), 'B+++')示例3: TestProgressMeter
# 需要导入模块: from six.moves import StringIO [as 别名]
# 或者: from six.moves.StringIO import readlines [as 别名]
class TestProgressMeter(TestCase):
def setUp(self):
self.buf = StringIO()
def tearDown(self):
del self.buf
def _assert_in(self, output, string):
assert_(string in output,
"Output '{0}' does not match required format '{1}'.".format(
output.replace('\r', '\\r'), string))
def test_default_ProgressMeter(self, n=101, interval=10):
format = "Step %(step)5d/%(numsteps)d [%(percentage)5.1f%%]\r"
with RedirectedStderr(self.buf):
pm = MDAnalysis.lib.log.ProgressMeter(n, interval=interval)
for frame in range(n):
pm.echo(frame)
self.buf.seek(0)
output = "".join(self.buf.readlines())
self._assert_in(output, format % {'step': 1, 'numsteps': n, 'percentage': 100./n})
# last line always has \n instead of \r!
self._assert_in(output, format.replace('\r', '\n') %
{'step': n, 'numsteps': n, 'percentage': 100.})
def test_custom_ProgressMeter(self, n=51, interval=7):
format = "RMSD %(rmsd)5.2f at %(step)03d/%(numsteps)4d [%(percentage)5.1f%%]\r"
with RedirectedStderr(self.buf):
pm = MDAnalysis.lib.log.ProgressMeter(n, interval=interval,
format=format, offset=1)
for frame in range(n):
rmsd = 0.02 * frame * (n+1)/float(n) # n+1/n correction for 0-based frame vs 1-based counting
pm.echo(frame, rmsd=rmsd)
self.buf.seek(0)
output = "".join(self.buf.readlines())
self._assert_in(output, format %
{'rmsd': 0.0, 'step': 1, 'numsteps': n, 'percentage': 100./n})
# last line always has \n instead of \r!
self._assert_in(output, format.replace('\r', '\n') %
{'rmsd': 0.02*n, 'step': n, 'numsteps': n, 'percentage': 100.0})示例4: test_single_at
# 需要导入模块: from six.moves import StringIO [as 别名]
# 或者: from six.moves.StringIO import readlines [as 别名]
def test_single_at(self):
source = StringIO("""@header1
AGCTTTTT
+
@IIIB+++
@header2
AGCTTTTT
+
IIIIB+++
""")
target1 = StringIO()
srf2fastq.convert_single_to_fastq(source, target1)
target1.seek(0)
lines1 = target1.readlines()
self.assertEqual(len(lines1),8)
self.assertEqual(lines1[0].rstrip(), '@header1')
self.assertEqual(lines1[1].rstrip(), 'AGCTTTTT')
self.assertEqual(lines1[2].rstrip(), '+')
self.assertEqual(lines1[3].rstrip(), '@IIIB+++')示例5: len
# 需要导入模块: from six.moves import StringIO [as 别名]
# 或者: from six.moves.StringIO import readlines [as 别名]
log.removeHandler(logging_handler)
args_obj, _, _ = app.make_cli_parser().interpret_args(['--verbose'])
logging_handler = app.setup_logging(args_obj)
log.debug("this one is captured")
log.removeHandler(logging_handler)
args_obj, _, _ = app.make_cli_parser().interpret_args(['--silent'])
logging_handler = app.setup_logging(args_obj)
log.debug("not captured")
log.warning("not captured")
log.info("not captured")
log.error("also captured")
fle.flush()
fle.seek(0)
logs = fle.readlines()
now = datetime.datetime.now()
date = now.strftime("%Y-%m-%d [^ ]+")
expect = [
re.compile("{0} INFO blah hello there".format(date))
, re.compile("{0} ERROR blah hmmm".format(date))
, re.compile("{0} WARNING blah yeap".format(date))
, re.compile("{0} DEBUG blah this one is captured".format(date))
, re.compile("{0} ERROR blah also captured".format(date))
]
self.assertEqual(len(expect), len(logs), logs)
for index, line in enumerate(expect):
assert line.match(logs[index].strip()), "Expected '{0}' to match '{1}'".format(logs[index].strip().replace('\t', '\\t').replace(' ', '.'), line.pattern.replace('\t', '\\t').replace(' ', '.'))
describe "make_cli_parser":