Python MixedIntegerLinearProgram.new_variable方法代码示例

# 需要导入模块: from sage.numerical.mip import MixedIntegerLinearProgram [as 别名]
# 或者: from sage.numerical.mip.MixedIntegerLinearProgram import new_variable [as 别名]
def _delsarte_LP_building(n, d, d_star, q, isinteger,  solver, maxc = 0):
    """
    LP builder - common for the two functions; not exported.

    EXAMPLES::

        sage: from sage.coding.delsarte_bounds import _delsarte_LP_building
        sage: _,p=_delsarte_LP_building(7, 3, 0, 2, False, "PPL")
        sage: p.show()
        Maximization:
          x_0 + x_1 + x_2 + x_3 + x_4 + x_5 + x_6 + x_7
        Constraints:
          constraint_0: 1 <= x_0 <= 1
          constraint_1: 0 <= x_1 <= 0
          constraint_2: 0 <= x_2 <= 0
          constraint_3: -7 x_0 - 5 x_1 - 3 x_2 - x_3 + x_4 + 3 x_5 + 5 x_6 + 7 x_7 <= 0
          constraint_4: -7 x_0 - 5 x_1 - 3 x_2 - x_3 + x_4 + 3 x_5 + 5 x_6 + 7 x_7 <= 0
          constraint_5: -21 x_0 - 9 x_1 - x_2 + 3 x_3 + 3 x_4 - x_5 - 9 x_6 - 21 x_7 <= 0
          constraint_6: -21 x_0 - 9 x_1 - x_2 + 3 x_3 + 3 x_4 - x_5 - 9 x_6 - 21 x_7 <= 0
          constraint_7: -35 x_0 - 5 x_1 + 5 x_2 + 3 x_3 - 3 x_4 - 5 x_5 + 5 x_6 + 35 x_7 <= 0
          constraint_8: -35 x_0 - 5 x_1 + 5 x_2 + 3 x_3 - 3 x_4 - 5 x_5 + 5 x_6 + 35 x_7 <= 0
          constraint_9: -35 x_0 + 5 x_1 + 5 x_2 - 3 x_3 - 3 x_4 + 5 x_5 + 5 x_6 - 35 x_7 <= 0
          constraint_10: -35 x_0 + 5 x_1 + 5 x_2 - 3 x_3 - 3 x_4 + 5 x_5 + 5 x_6 - 35 x_7 <= 0
          constraint_11: -21 x_0 + 9 x_1 - x_2 - 3 x_3 + 3 x_4 + x_5 - 9 x_6 + 21 x_7 <= 0
          constraint_12: -21 x_0 + 9 x_1 - x_2 - 3 x_3 + 3 x_4 + x_5 - 9 x_6 + 21 x_7 <= 0
          constraint_13: -7 x_0 + 5 x_1 - 3 x_2 + x_3 + x_4 - 3 x_5 + 5 x_6 - 7 x_7 <= 0
          constraint_14: -7 x_0 + 5 x_1 - 3 x_2 + x_3 + x_4 - 3 x_5 + 5 x_6 - 7 x_7 <= 0
          constraint_15: - x_0 + x_1 - x_2 + x_3 - x_4 + x_5 - x_6 + x_7 <= 0
          constraint_16: - x_0 + x_1 - x_2 + x_3 - x_4 + x_5 - x_6 + x_7 <= 0
        Variables:
          x_0 is a continuous variable (min=0, max=+oo)
          x_1 is a continuous variable (min=0, max=+oo)
          x_2 is a continuous variable (min=0, max=+oo)
          x_3 is a continuous variable (min=0, max=+oo)
          x_4 is a continuous variable (min=0, max=+oo)
          x_5 is a continuous variable (min=0, max=+oo)
          x_6 is a continuous variable (min=0, max=+oo)
          x_7 is a continuous variable (min=0, max=+oo)

    """
    from sage.numerical.mip import MixedIntegerLinearProgram

    p = MixedIntegerLinearProgram(maximization=True, solver=solver)
    A = p.new_variable(integer=isinteger, nonnegative=not isinteger) # A>=0 is assumed
    p.set_objective(sum([A[r] for r in xrange(n+1)]))
    p.add_constraint(A[0]==1)
    for i in xrange(1,d):
        p.add_constraint(A[i]==0)
    for j in xrange(1,n+1):
        rhs = sum([Krawtchouk(n,q,j,r,check=False)*A[r] for r in xrange(n+1)])
        p.add_constraint(0*A[0] <= rhs)
        if j >= d_star:
          p.add_constraint(0*A[0] <= rhs)
        else: # rhs is proportional to j-th weight of the dual code
          p.add_constraint(0*A[0] == rhs)

    if maxc > 0:
        p.add_constraint(sum([A[r] for r in xrange(n+1)]), max=maxc)
    return A, p

# 需要导入模块: from sage.numerical.mip import MixedIntegerLinearProgram [as 别名]
# 或者: from sage.numerical.mip.MixedIntegerLinearProgram import new_variable [as 别名]
def OA_find_disjoint_blocks(OA,k,n,x):
    r"""
    Return `x` disjoint blocks contained in a given `OA(k,n)`.

    `x` blocks of an `OA` are said to be disjoint if they all have
    different values for a every given index, i.e. if they correspond to
    disjoint blocks in the `TD` assciated with the `OA`.

    INPUT:

    - ``OA`` -- an orthogonal array

    - ``k,n,x`` (integers)

    .. SEEALSO::

        :func:`incomplete_orthogonal_array`

    EXAMPLES::

        sage: from sage.combinat.designs.orthogonal_arrays import OA_find_disjoint_blocks
        sage: k=3;n=4;x=3
        sage: Bs = OA_find_disjoint_blocks(designs.orthogonal_array(k,n),k,n,x)
        sage: assert len(Bs) == x
        sage: for i in range(k):
        ....:     assert len(set([B[i] for B in Bs])) == x
        sage: OA_find_disjoint_blocks(designs.orthogonal_array(k,n),k,n,5)
        Traceback (most recent call last):
        ...
        ValueError: There does not exist 5 disjoint blocks in this OA(3,4)
    """

    # Computing an independent set of order x with a Linear Program
    from sage.numerical.mip import MixedIntegerLinearProgram, MIPSolverException
    p = MixedIntegerLinearProgram()
    b = p.new_variable(binary=True)
    p.add_constraint(p.sum(b[i] for i in range(len(OA))) == x)

    # t[i][j] lists of blocks of the OA whose i'th component is j
    t = [[[] for _ in range(n)] for _ in range(k)]
    for c,B in enumerate(OA):
        for i,j in enumerate(B):
            t[i][j].append(c)

    for R in t:
        for L in R:
            p.add_constraint(p.sum(b[i] for i in L) <= 1)

    try:
        p.solve()
    except MIPSolverException:
        raise ValueError("There does not exist {} disjoint blocks in this OA({},{})".format(x,k,n))

    b = p.get_values(b)
    independent_set = [OA[i] for i,v in b.items() if v]
    return independent_set

# 需要导入模块: from sage.numerical.mip import MixedIntegerLinearProgram [as 别名]
# 或者: from sage.numerical.mip.MixedIntegerLinearProgram import new_variable [as 别名]
def solve_magic_hexagon(solver=None):
    r"""
    Solves the magic hexagon problem

    We use the following convention for the positions::

           1   2  3
         4  5   6   7
       8   9  10  11  12
        13  14  15  16
          17  18  19

    INPUT:

    - ``solver`` -- string (default:``None``)

    EXAMPLES::

        sage: from slabbe.magic_hexagon import solve_magic_hexagon
        sage: solve_magic_hexagon() # long time (90s if GLPK, <1s if Gurobi)
        [15, 14, 9, 13, 8, 6, 11, 10, 4, 5, 1, 18, 12, 2, 7, 17, 16, 19, 3]

    """
    p = MixedIntegerLinearProgram(solver=solver)
    x = p.new_variable(binary=True)

    A = range(1,20)

    # exactly one tile at each position pos
    for pos in A:
        S = p.sum(x[pos,tile] for tile in A)
        name = "one tile at {}".format(pos)
        p.add_constraint(S==1, name=name)

    # each tile used exactly once
    for tile in A:
        S = p.sum(x[pos,tile] for pos in A)
        name = "tile {} used once".format(tile)
        p.add_constraint(S==1, name=name)

    lines = [(1,2,3), (4,5,6,7), (8,9,10,11,12), (13,14,15,16), (17,18,19),
             (1,4,8), (2,5,9,13), (3,6,10,14,17), (7,11,15,18), (12,16,19),
             (8,13,17), (4,9,14,18), (1,5,10,15,19), (2,6,11,16), (3,7,12)]

    # the sum is 38 on each line
    for line in lines:
        S = p.sum(tile*x[pos,tile] for tile in A for pos in line) 
        name = "sum of line {} must be 38".format(line)
        p.add_constraint(S==38, name=name)

    p.solve()
    soln = p.get_values(x)
    nonzero = sorted(key for key in soln if soln[key]!=0)
    return [tile for (pos,tile) in nonzero]

# 需要导入模块: from sage.numerical.mip import MixedIntegerLinearProgram [as 别名]
# 或者: from sage.numerical.mip.MixedIntegerLinearProgram import new_variable [as 别名]
    def packing(self, solver=None, verbose=0):
        r"""
        Return a maximum packing

        A maximum packing in a hypergraph is collection of disjoint sets/blocks
        of maximal cardinality. This problem is NP-complete in general, and in
        particular on 3-uniform hypergraphs. It is solved here with an Integer
        Linear Program.

        For more information, see the :wikipedia:`Packing_in_a_hypergraph`.

        INPUT:

        - ``solver`` -- (default: ``None``) Specify a Linear Program (LP)
          solver to be used. If set to ``None``, the default one is used. For
          more information on LP solvers and which default solver is used, see
          the method
          :meth:`solve <sage.numerical.mip.MixedIntegerLinearProgram.solve>`
          of the class
          :class:`MixedIntegerLinearProgram <sage.numerical.mip.MixedIntegerLinearProgram>`.

        - ``verbose`` -- integer (default: ``0``). Sets the level of
          verbosity. Set to 0 by default, which means quiet.
          Only useful when ``algorithm == "LP"``.

        EXAMPLE::

            sage; IncidenceStructure([[1,2],[3,"A"],[2,3]]).packing()
            [[1, 2], [3, 'A']]
            sage: len(designs.steiner_triple_system(9).packing())
            3
        """
        from sage.numerical.mip import MixedIntegerLinearProgram

        # List of blocks containing a given point x
        d = [[] for x in self._points]
        for i,B in enumerate(self._blocks):
            for x in B:
                d[x].append(i)

        p = MixedIntegerLinearProgram(solver=solver)
        b = p.new_variable(binary=True)
        for x,L in enumerate(d): # Set of disjoint blocks
            p.add_constraint(p.sum([b[i] for i in L]) <= 1)

        # Maximum number of blocks
        p.set_objective(p.sum([b[i] for i in range(self.num_blocks())]))

        p.solve(log=verbose)

        return [[self._points[x] for x in self._blocks[i]]
                for i,v in p.get_values(b).iteritems() if v]

# 需要导入模块: from sage.numerical.mip import MixedIntegerLinearProgram [as 别名]
# 或者: from sage.numerical.mip.MixedIntegerLinearProgram import new_variable [as 别名]
    def _solve_linear_program(self, target):
        r"""
        Return the coefficients of a linear combination to write ``target`` in
        terms of the generators of this semigroup.

        Return ``None`` if no such combination exists.

        EXAMPLES::

            sage: from sage.rings.valuation.value_group import DiscreteValueSemigroup
            sage: D = DiscreteValueSemigroup([2,3,5])
            sage: D._solve_linear_program(12)
            {0: 1, 1: 0, 2: 2}
            sage: 1*2 + 0*3 + 2*5
            12

        """
        if len(self._generators) == 0:
            if target == 0:
                return {}
            else:
                return None

        if len(self._generators) == 1:
            from sage.rings.all import NN
            exp = target / self._generators[0]
            if exp not in NN:
                return None
            return {0 : exp}

        if len(self._generators) == 2 and self._generators[0] == - self._generators[1]:
            from sage.rings.all import ZZ
            exp = target / self._generators[0]
            if exp not in ZZ:
                return None
            return {0: exp, 1: 0}

        from sage.numerical.mip import MixedIntegerLinearProgram, MIPSolverException
        P = MixedIntegerLinearProgram(maximization=False, solver="ppl")
        x = P.new_variable(integer=True, nonnegative=True)
        constraint = sum([g*x[i] for i,g in enumerate(self._generators)]) == target
        P.add_constraint(constraint)
        P.set_objective(None)
        try:
            P.solve()
        except MIPSolverException:
            return None
        return P.get_values(x)

# 需要导入模块: from sage.numerical.mip import MixedIntegerLinearProgram [as 别名]
# 或者: from sage.numerical.mip.MixedIntegerLinearProgram import new_variable [as 别名]

#.........这里部分代码省略.........
            [0 0 0 0]
            [0 0 0 0]
            sage: gale_ryser_theorem([0,0,0],[0,0,0,0], algorithm="ryser")
            [0 0 0 0]
            [0 0 0 0]
            [0 0 0 0]

        Check that :trac:`16638` is fixed::

            sage: tests = [([4, 3, 3, 2, 1, 1, 1, 1, 0], [6, 5, 1, 1, 1, 1, 1]),
            ....:          ([4, 4, 3, 3, 1, 1, 0], [5, 5, 2, 2, 1, 1]),
            ....:          ([4, 4, 3, 2, 1, 1], [5, 5, 1, 1, 1, 1, 1, 0, 0]),
            ....:          ([3, 3, 3, 3, 2, 1, 1, 1, 0], [7, 6, 2, 1, 1, 0]),
            ....:          ([3, 3, 3, 1, 1, 0], [4, 4, 1, 1, 1])]
            sage: for s1, s2 in tests:
            ....:     m = gale_ryser_theorem(s1, s2, algorithm="ryser")
            ....:     ss1 = sorted(map(lambda x : sum(x) , m.rows()), reverse = True)
            ....:     ss2 = sorted(map(lambda x : sum(x) , m.columns()), reverse = True)
            ....:     if ((ss1 != s1) or (ss2 != s2)):
            ....:         print("Error in Ryser algorithm")
            ....:         print(s1, s2)

        REFERENCES:

        ..  [Ryser63] \H. J. Ryser, Combinatorial Mathematics,
            Carus Monographs, MAA, 1963.
        ..  [Gale57] \D. Gale, A theorem on flows in networks, Pacific J. Math.
            7(1957)1073-1082.
        """
        from sage.combinat.partition import Partition
        from sage.matrix.constructor import matrix

        if not(is_gale_ryser(p1,p2)):
            return False

        if algorithm=="ryser": # ryser's algorithm
            from sage.combinat.permutation import Permutation

            # Sorts the sequences if they are not, and remembers the permutation
            # applied
            tmp = sorted(enumerate(p1), reverse=True, key=lambda x:x[1])
            r = [x[1] for x in tmp]
            r_permutation = [x-1 for x in Permutation([x[0]+1 for x in tmp]).inverse()]
            m = len(r)

            tmp = sorted(enumerate(p2), reverse=True, key=lambda x:x[1])
            s = [x[1] for x in tmp]
            s_permutation = [x-1 for x in Permutation([x[0]+1 for x in tmp]).inverse()]
            n = len(s)

            # This is the partition equivalent to the sliding algorithm
            cols = []
            for t in reversed(s):
                c = [0] * m
                i = 0
                while t:
                    k = i + 1
                    while k < m and r[i] == r[k]:
                        k += 1
                    if t >= k - i: # == number rows of the same length
                        for j in range(i, k):
                            r[j] -= 1
                            c[j] = 1
                        t -= k - i
                    else: # Remove the t last rows of that length
                        for j in range(k-t, k):
                            r[j] -= 1
                            c[j] = 1
                        t = 0
                    i = k
                cols.append(c)

            # We added columns to the back instead of the front
            A0 = matrix(list(reversed(cols))).transpose()

            # Applying the permutations to get a matrix satisfying the
            # order given by the input
            A0 = A0.matrix_from_rows_and_columns(r_permutation, s_permutation)
            return A0

        elif algorithm == "gale":
          from sage.numerical.mip import MixedIntegerLinearProgram
          k1, k2=len(p1), len(p2)
          p = MixedIntegerLinearProgram()
          b = p.new_variable(binary = True)
          for (i,c) in enumerate(p1):
              p.add_constraint(p.sum([b[i,j] for j in xrange(k2)]) ==c)
          for (i,c) in enumerate(p2):
              p.add_constraint(p.sum([b[j,i] for j in xrange(k1)]) ==c)
          p.set_objective(None)
          p.solve()
          b = p.get_values(b)
          M = [[0]*k2 for i in xrange(k1)]
          for i in xrange(k1):
              for j in xrange(k2):
                  M[i][j] = int(b[i,j])
          return matrix(M)

        else:
            raise ValueError("The only two algorithms available are \"gale\" and \"ryser\"")

# 需要导入模块: from sage.numerical.mip import MixedIntegerLinearProgram [as 别名]
# 或者: from sage.numerical.mip.MixedIntegerLinearProgram import new_variable [as 别名]

#.........这里部分代码省略.........
        and is characterized by the following property: it is not empty and each
        block either contains `0` or `s` points of this arc. Equivalently, the
        trace of the BIBD on these points is again a BIBD (with block size `s`).

        For more informations, see :wikipedia:`Arc_(projective_geometry)`.

        INPUT:

        - ``s`` - (default to ``2``) the maximum number of points from the arc
          in each block

        - ``solver`` -- (default: ``None``) Specify a Linear Program (LP)
          solver to be used. If set to ``None``, the default one is used. For
          more information on LP solvers and which default solver is used, see
          the method
          :meth:`solve <sage.numerical.mip.MixedIntegerLinearProgram.solve>`
          of the class
          :class:`MixedIntegerLinearProgram <sage.numerical.mip.MixedIntegerLinearProgram>`.

        - ``verbose`` -- integer (default: ``0``). Sets the level of
          verbosity. Set to 0 by default, which means quiet.

        EXAMPLES::

            sage: B = designs.balanced_incomplete_block_design(21, 5)
            sage: a2 = B.arc()
            sage: a2 # random
            [5, 9, 10, 12, 15, 20]
            sage: len(a2)
            6
            sage: a4 = B.arc(4)
            sage: a4 # random
            [0, 1, 2, 5, 6, 8, 9, 10, 11, 12, 13, 14, 15, 16, 18, 20]
            sage: len(a4)
            16

        The `2`-arc and `4`-arc above are maximal. One can check that they
        intersect the blocks in either 0 or `s` points. Or equivalently that the
        traces are again BIBD::

            sage: r = (21-1)/(5-1)
            sage: 1 + r*1
            6
            sage: 1 + r*3
            16

            sage: B.trace(a2).is_t_design(2, return_parameters=True)
            (True, (2, 6, 2, 1))
            sage: B.trace(a4).is_t_design(2, return_parameters=True)
            (True, (2, 16, 4, 1))

        Some other examples which are not maximal::

            sage: B = designs.balanced_incomplete_block_design(25, 4)
            sage: a2 = B.arc(2)
            sage: r = (25-1)/(4-1)
            sage: print len(a2), 1 + r
            8 9
            sage: sa2 = set(a2)
            sage: set(len(sa2.intersection(b)) for b in B.blocks())
            {0, 1, 2}
            sage: B.trace(a2).is_t_design(2)
            False

            sage: a3 = B.arc(3)
            sage: print len(a3), 1 + 2*r
            15 17
            sage: sa3 = set(a3)
            sage: set(len(sa3.intersection(b)) for b in B.blocks()) == set([0,3])
            False
            sage: B.trace(a3).is_t_design(3)
            False

        TESTS:

        Test consistency with relabeling::

            sage: b = designs.balanced_incomplete_block_design(7,3)
            sage: b.relabel(list("abcdefg"))
            sage: set(b.arc()).issubset(b.ground_set())
            True
        """
        s = int(s)

        # trivial cases
        if s <= 0:
            return []
        elif s >= max(self.block_sizes()):
            return self._points[:]

        # linear program
        from sage.numerical.mip import MixedIntegerLinearProgram

        p = MixedIntegerLinearProgram(solver=solver)
        b = p.new_variable(binary=True)
        p.set_objective(p.sum(b[i] for i in range(len(self._points))))
        for i in self._blocks:
            p.add_constraint(p.sum(b[k] for k in i) <= s)
        p.solve(log=verbose)
        return [self._points[i] for (i,j) in p.get_values(b).items() if j == 1]

# 需要导入模块: from sage.numerical.mip import MixedIntegerLinearProgram [as 别名]
# 或者: from sage.numerical.mip.MixedIntegerLinearProgram import new_variable [as 别名]
def binpacking(items,maximum=1,k=None):
    r"""
    Solves the bin packing problem.

    The Bin Packing problem is the following :

    Given a list of items of weights `p_i` and a real value `K`, what is
    the least number of bins such that all the items can be put in the
    bins, while keeping sure that each bin contains a weight of at most `K` ?

    For more informations : http://en.wikipedia.org/wiki/Bin_packing_problem

    Two version of this problem are solved by this algorithm :
         * Is it possible to put the given items in `L` bins ?
         * What is the assignment of items using the
           least number of bins with the given list of items ?

    INPUT:

    - ``items`` -- A list of real values (the items' weight)

    - ``maximum``   -- The maximal size of a bin

    - ``k``     -- Number of bins

      - When set to an integer value, the function returns a partition
        of the items into `k` bins if possible, and raises an
        exception otherwise.

      - When set to ``None``, the function returns a partition of the items
        using the least number possible of bins.

    OUTPUT:

    A list of lists, each member corresponding to a box and containing
    the list of the weights inside it. If there is no solution, an
    exception is raised (this can only happen when ``k`` is specified
    or if ``maximum`` is less that the size of one item).

    EXAMPLES:

    Trying to find the minimum amount of boxes for 5 items of weights
    `1/5, 1/4, 2/3, 3/4, 5/7`::

        sage: from sage.numerical.optimize import binpacking
        sage: values = [1/5, 1/3, 2/3, 3/4, 5/7]
        sage: bins = binpacking(values)
        sage: len(bins)
        3

    Checking the bins are of correct size ::

        sage: all([ sum(b)<= 1 for b in bins ])
        True

    Checking every item is in a bin ::

        sage: b1, b2, b3 = bins
        sage: all([ (v in b1 or v in b2 or v in b3) for v in values ])
        True

    One way to use only three boxes (which is best possible) is to put
    `1/5 + 3/4` together in a box, `1/3+2/3` in another, and `5/7`
    by itself in the third one.

    Of course, we can also check that there is no solution using only two boxes ::

        sage: from sage.numerical.optimize import binpacking
        sage: binpacking([0.2,0.3,0.8,0.9], k=2)
        Traceback (most recent call last):
        ...
        ValueError: This problem has no solution !
    """

    if max(items) > maximum:
        raise ValueError("This problem has no solution !")

    if k==None:
        from sage.functions.other import ceil
        k=ceil(sum(items)/maximum)
        while True:
            from sage.numerical.mip import MIPSolverException
            try:
                return binpacking(items,k=k,maximum=maximum)
            except MIPSolverException:
                k = k + 1

    from sage.numerical.mip import MixedIntegerLinearProgram, MIPSolverException
    p=MixedIntegerLinearProgram()

    # Boolean variable indicating whether
    # the i th element belongs to box b
    box=p.new_variable(dim=2)

    # Each bin contains at most max
    for b in range(k):
        p.add_constraint(p.sum([items[i]*box[i][b] for i in range(len(items))]),max=maximum)

    # Each item is assigned exactly one bin
    for i in range(len(items)):
#.........这里部分代码省略.........

# 需要导入模块: from sage.numerical.mip import MixedIntegerLinearProgram [as 别名]
# 或者: from sage.numerical.mip.MixedIntegerLinearProgram import new_variable [as 别名]
def knapsack(seq, binary=True, max=1, value_only=False):
    r"""
    Solves the knapsack problem

    Knapsack problems:

    You have already had a knapsack problem, so you should know,
    but in case you do not, a knapsack problem is what happens
    when you have hundred of items to put into a bag which is
    too small for all of them.

    When you formally write it, here is your problem:

    * Your bag can contain a weight of at most `W`.
    * Each item `i` you have has a weight `w_i`.
    * Each item `i` has a usefulness of `u_i`.

    You then want to maximize the usefulness of the items you
    will store into your bag, while keeping sure the weight of
    the bag will not go over `W`.

    As a linear program, this problem can be represented this way
    (if you define `b_i` as the binary variable indicating whether
    the item `i` is to be included in your bag):

    .. MATH::

        \mbox{Maximize: }\sum_i b_i u_i \\
        \mbox{Such that: }
        \sum_i b_i w_i \leq W \\
        \forall i, b_i \mbox{ binary variable} \\

    (For more information,
    cf. http://en.wikipedia.org/wiki/Knapsack_problem.)

    EXAMPLE:

    If your knapsack problem is composed of three
    items (weight, value) defined by (1,2), (1.5,1), (0.5,3),
    and a bag of maximum weight 2, you can easily solve it this way::

        sage: from sage.numerical.knapsack import knapsack
        sage: knapsack( [(1,2), (1.5,1), (0.5,3)], max=2)
        [5.0, [(1, 2), (0.500000000000000, 3)]]

        sage: knapsack( [(1,2), (1.5,1), (0.5,3)], max=2, value_only=True)
        5.0

    In the case where all the values (usefulness) of the items
    are equal to one, you do not need embarrass yourself with
    the second values, and you can just type for items
    `(1,1), (1.5,1), (0.5,1)` the command::

        sage: from sage.numerical.knapsack import knapsack
        sage: knapsack([1,1.5,0.5], max=2, value_only=True)
        2.0

    INPUT:

    - ``seq`` -- Two different possible types:

      - A sequence of pairs (weight, value).
      - A sequence of reals (a value of 1 is assumed).

    - ``binary`` -- When set to True, an item can be taken 0 or 1 time.
      When set to False, an item can be taken any amount of
      times (while staying integer and positive).

    - ``max`` -- Maximum admissible weight.

    - ``value_only`` -- When set to True, only the maximum useful
      value is returned. When set to False, both the maximum useful
      value and an assignment are returned.

    OUTPUT:

    If ``value_only`` is set to True, only the maximum useful value
    is returned. Else (the default), the function returns a pair
    ``[value,list]``, where ``list`` can be of two types according
    to the type of ``seq``:

    - A list of pairs `(w_i, u_i)` for each object `i` occurring
      in the solution.
    - A list of reals where each real is repeated the number
      of times it is taken into the solution.
    """
    reals = not isinstance(seq[0], tuple)
    if reals:
        seq = [(x, 1) for x in seq]

    from sage.numerical.mip import MixedIntegerLinearProgram

    p = MixedIntegerLinearProgram(maximization=True)
    present = p.new_variable()
    p.set_objective(p.sum([present[i] * seq[i][1] for i in range(len(seq))]))
    p.add_constraint(p.sum([present[i] * seq[i][0] for i in range(len(seq))]), max=max)

    if binary:
        p.set_binary(present)
    else:
#.........这里部分代码省略.........

# 需要导入模块: from sage.numerical.mip import MixedIntegerLinearProgram [as 别名]
# 或者: from sage.numerical.mip.MixedIntegerLinearProgram import new_variable [as 别名]
class SatLP(SatSolver):
    def __init__(self, solver=None):
        r"""
        Initializes the instance

        INPUT:

        - ``solver`` -- (default: ``None``) Specify a Linear Program (LP)
          solver to be used. If set to ``None``, the default one is used. For
          more information on LP solvers and which default solver is used, see
          the method
          :meth:`solve <sage.numerical.mip.MixedIntegerLinearProgram.solve>`
          of the class
          :class:`MixedIntegerLinearProgram <sage.numerical.mip.MixedIntegerLinearProgram>`.

        EXAMPLES::

            sage: S=SAT(solver="LP"); S
            an ILP-based SAT Solver
        """
        SatSolver.__init__(self)
        self._LP = MixedIntegerLinearProgram()
        self._vars = self._LP.new_variable(binary=True)

    def var(self):
        """
        Return a *new* variable.

        EXAMPLES::

            sage: S=SAT(solver="LP"); S
            an ILP-based SAT Solver
            sage: S.var()
            1
        """
        nvars = n = self._LP.number_of_variables()
        while nvars==self._LP.number_of_variables():
            n += 1
            self._vars[n] # creates the variable if needed
        return n

    def nvars(self):
        """
        Return the number of variables.

        EXAMPLES::

            sage: S=SAT(solver="LP"); S
            an ILP-based SAT Solver
            sage: S.var()
            1
            sage: S.var()
            2
            sage: S.nvars()
            2
        """
        return self._LP.number_of_variables()

    def add_clause(self, lits):
        """
        Add a new clause to set of clauses.

        INPUT:

        - ``lits`` - a tuple of integers != 0

        .. note::

            If any element ``e`` in ``lits`` has ``abs(e)`` greater
            than the number of variables generated so far, then new
            variables are created automatically.

        EXAMPLES::

            sage: S=SAT(solver="LP"); S
            an ILP-based SAT Solver
            sage: for u,v in graphs.CycleGraph(6).edges(labels=False):
            ....:     u,v = u+1,v+1
            ....:     S.add_clause((u,v))
            ....:     S.add_clause((-u,-v))
        """
        if 0 in lits:
            raise ValueError("0 should not appear in the clause: {}".format(lits))
        p = self._LP
        p.add_constraint(p.sum(self._vars[x] if x>0 else 1-self._vars[-x] for x in lits)
                         >=1)

    def __call__(self):
        """
        Solve this instance.

        OUTPUT:

        - If this instance is SAT: A tuple of length ``nvars()+1``
          where the ``i``-th entry holds an assignment for the
          ``i``-th variables (the ``0``-th entry is always ``None``).

        - If this instance is UNSAT: ``False``

        EXAMPLES::
#.........这里部分代码省略.........

# 需要导入模块: from sage.numerical.mip import MixedIntegerLinearProgram [as 别名]
# 或者: from sage.numerical.mip.MixedIntegerLinearProgram import new_variable [as 别名]
def OA_and_oval(q):
    r"""
    Return a `OA(q+1,q)` whose blocks contains `\leq 2` zeroes in the last `q`
    columns.

    This `OA` is build from a projective plane of order `q`, in which there
    exists an oval `O` of size `q+1` (i.e. a set of `q+1` points no three of which
    are [colinear/contained in a common set of the projective plane]).

    Removing an element `x\in O` and all sets that contain it, we obtain a
    `TD(q+1,q)` in which `O` intersects all columns except one. As `O` is an
    oval, no block of the `TD` intersects it more than twice.

    INPUT:

    - ``q`` -- a prime power

    .. NOTE::

            This function is called by :func:`construction_3_6`, an
            implementation of Construction 3.6 from [AC07]_.

    EXAMPLES::

        sage: from sage.combinat.designs.orthogonal_arrays_recursive import OA_and_oval
        sage: _ = OA_and_oval

    """
    from sage.rings.arith import is_prime_power
    from sage.combinat.designs.block_design import projective_plane
    from orthogonal_arrays import OA_relabel

    assert is_prime_power(q)
    B = projective_plane(q, check=False)

    # We compute the oval with a linear program
    from sage.numerical.mip import MixedIntegerLinearProgram
    p = MixedIntegerLinearProgram()
    b = p.new_variable(binary=True)
    V = B.ground_set()
    p.add_constraint(p.sum([b[i] for i in V]) == q+1)
    for bl in B:
        p.add_constraint(p.sum([b[i] for i in bl]) <= 2)
    p.solve()
    b = p.get_values(b)
    oval = [x for x,i in b.items() if i]
    assert len(oval) == q+1

    # We remove one element from the oval
    x = oval.pop()
    oval.sort()

    # We build the TD by relabelling the point set, and removing those which
    # contain x.
    r = {}
    B = list(B)
    # (this is to make sure that the first set containing x in B is the one
    # which contains no other oval point)

    B.sort(key=lambda b:int(any([xx in oval for xx in b])))
    BB = []
    for b in B:
        if x in b:
            for xx in b:
                if xx == x:
                    continue
                r[xx] = len(r)
        else:
            BB.append(b)

    assert len(r) == (q+1)*q # all points except x have an image
    assert len(set(r.values())) == len(r) # the images are different

    # Relabelling/sorting the blocks and the oval
    BB = [[r[xx] for xx in b] for b in BB]
    oval = [r[xx] for xx in oval]

    for b in BB:
        b.sort()
    oval.sort()

    # Turning the TD into an OA
    BB = [[xx%q for xx in b] for b in BB]
    oval = [xx%q for xx in oval]
    assert len(oval) == q

    # We relabel the "oval" as relabelled as [0,...,0]
    OA = OA_relabel(BB+([[0]+oval]),q+1,q,blocks=[[0]+oval])
    OA = [[(x+1)%q for x in B] for B in OA]
    OA.remove([0]*(q+1))

    assert all(sum([xx == 0 for xx in b[1:]]) <= 2 for b in OA)
    return OA

# 需要导入模块: from sage.numerical.mip import MixedIntegerLinearProgram [as 别名]
# 或者: from sage.numerical.mip.MixedIntegerLinearProgram import new_variable [as 别名]

#.........这里部分代码省略.........

        sage: from sage.numerical.optimize import binpacking
        sage: values = [1/5, 1/3, 2/3, 3/4, 5/7]
        sage: bins = binpacking(values)
        sage: len(bins)
        3

    Checking the bins are of correct size ::

        sage: all(sum(b) <= 1 for b in bins)
        True

    Checking every item is in a bin ::

        sage: b1, b2, b3 = bins
        sage: all((v in b1 or v in b2 or v in b3) for v in values)
        True

    And only in one bin ::

        sage: sum(len(b) for b in bins) == len(values)
        True

    One way to use only three boxes (which is best possible) is to put
    `1/5 + 3/4` together in a box, `1/3+2/3` in another, and `5/7`
    by itself in the third one.

    Of course, we can also check that there is no solution using only two boxes ::

        sage: from sage.numerical.optimize import binpacking
        sage: binpacking([0.2,0.3,0.8,0.9], k=2)
        Traceback (most recent call last):
        ...
        ValueError: this problem has no solution !

    We can also provide a dictionary keyed by items and associating to each item
    its weight. Then, the bins contain the name of the items inside it ::

        sage: values = {'a':1/5, 'b':1/3, 'c':2/3, 'd':3/4, 'e':5/7}
        sage: bins = binpacking(values)
        sage: set(flatten(bins)) == set(values.keys())
        True

    TESTS:

    Wrong type for parameter items::

        sage: binpacking(set())
        Traceback (most recent call last):
        ...
        TypeError: parameter items must be a list or a dictionary.
    """
    if isinstance(items, list):
        weight = {i:w for i,w in enumerate(items)}
    elif isinstance(items, dict):
        weight = items
    else:
        raise TypeError("parameter items must be a list or a dictionary.")

    if max(weight.values()) > maximum:
        raise ValueError("this problem has no solution !")

    if k is None:
        from sage.functions.other import ceil
        k = ceil(sum(weight.values())/maximum)
        while True:
            from sage.numerical.mip import MIPSolverException
            try:
                return binpacking(items, k=k, maximum=maximum, solver=solver, verbose=verbose)
            except MIPSolverException:
                k = k + 1

    from sage.numerical.mip import MixedIntegerLinearProgram, MIPSolverException
    p = MixedIntegerLinearProgram(solver=solver)

    # Boolean variable indicating whether the ith element belongs to box b
    box = p.new_variable(binary=True)

    # Capacity constraint of each bin
    for b in range(k):
        p.add_constraint(p.sum(weight[i]*box[i,b] for i in weight) <= maximum)

    # Each item is assigned exactly one bin
    for i in weight:
        p.add_constraint(p.sum(box[i,b] for b in range(k)) == 1)

    try:
        p.solve(log=verbose)
    except MIPSolverException:
        raise ValueError("this problem has no solution !")

    box = p.get_values(box)

    boxes = [[] for i in range(k)]

    for i,b in box:
        if box[i,b] == 1:
            boxes[b].append(weight[i] if isinstance(items, list) else i)

    return boxes

# 需要导入模块: from sage.numerical.mip import MixedIntegerLinearProgram [as 别名]
# 或者: from sage.numerical.mip.MixedIntegerLinearProgram import new_variable [as 别名]
def min_cover(npts, sets, solver='sage'):
    r"""
    EXAMPLES::

        sage: from max_plus.rank import min_cover
        sage: min_cover(5, [[0,1,2],[1,2,3],[2,4]], solver='sage')
        3
        sage: min_cover(5, [[0,1,2],[1,2,3],[2,4]], solver='lp_solve')   # optional -- lp_solve
        3
    """
    # check if the problem is solvable
    covered = [False for i in range(npts)]
    for set in sets:
        for ndx in set:
            covered[ndx] = True
    for c in covered:
        if not c:
            return False

    # Write the Free MPS format integer programming problem
    fh = open("tmp-rank-fmps", "w")
    fh.write("NAME min cover\n")
    fh.write("ROWS\n") # constraints
    for i in range(npts):
        fh.write(" G POINT" + str(i) + "\n")
    fh.write(" N NUMSETS\n")
    fh.write("COLUMNS\n") # variables
    for i in range(len(sets)):
        fh.write("  SET%d NUMSETS 1\n" % i)
        for point in sets[i]:
            fh.write("  SET%d POINT%d 1\n" % (i, point))
    fh.write("RHS\n") # right hand side to constraints
    for i in range(npts):
        fh.write("  COVER POINT%d 1\n" % i)
    fh.write("BOUNDS\n") # bounds on variables
    for i in range(len(sets)):
        fh.write(" BV A SET%d\n" % i)
    fh.write("ENDATA\n")
    fh.close()

    # Run the solver
    if solver == 'GLPK' or solver == 'glpk':
        # GLPK solver
        os.system("glpsol -w tmp-rank-glpsol tmp-rank-fmps > /dev/null")
        fh = open("tmp-rank-glpsol")
        fh.readline()
        line = fh.readline()
        min = int(line.split()[1])
        fh.close()
    elif solver == 'lp_solve':
        # lpsolve solver
        p = Popen(["lp_solve", "-fmps", "tmp-rank-fmps"], stdout=PIPE)
        fh = p.stdout
        fh.readline() # blank
        line = fh.readline()
        start = "Value of objective function: "
        if line[0:len(start)] != start:
            stderr.write("Unexpected output from lp_solve\n")
            min = 0
        else:
            min = int(line[len(start):])

        # read to the end of the output without storing anything
        while line:
            line = fh.readline()
        p.communicate()
        fh.close()

    elif solver == 'sage':
        from sage.numerical.mip import MixedIntegerLinearProgram
        M = MixedIntegerLinearProgram(maximization=False)
        x = M.new_variable(binary=True)

        nsets = len(sets)
        dual_sets = [[] for _ in range(npts)]

        for i,s in enumerate(sets):
            for k in s:
                dual_sets[k].append(i)

        for k in range(npts):
            M.add_constraint(M.sum(x[i] for i in dual_sets[k]) >= 1)

        M.set_objective(M.sum(x[i] for i in range(nsets)))

        min = int(M.solve())

    return min

# 需要导入模块: from sage.numerical.mip import MixedIntegerLinearProgram [as 别名]
# 或者: from sage.numerical.mip.MixedIntegerLinearProgram import new_variable [as 别名]
class hard_EM:
    def __init__(self, author_graph, TAU=0.5001, nparts=5, init_partition=None):
        self.parts = range(nparts)
        self.TAU = TAU
        self.author_graph = nx.convert_node_labels_to_integers(author_graph, discard_old_labels=False)
        self._lp_init = False
        # init hidden vars
        if init_partition:
            self.partition = init_partition
        else:
            self._rand_init_partition()
        self.m_step()

    def _rand_init_partition(self):
        slog('Random partitioning with seed: %s' % os.getpid())
        random.seed(os.getpid())
        self.partition = {}
        nparts = len(self.parts)
        for a in self.author_graph:
            self.partition[a] = randint(0, nparts - 1)

    def _init_LP(self):
        if self._lp_init:
            return

        slog('Init LP')
        self.lp = MixedIntegerLinearProgram(solver='GLPK', maximization=False)
        #self.lp.solver_parameter(backend.glp_simplex_or_intopt, backend.glp_simplex_only)       # LP relaxation
        self.lp.solver_parameter("iteration_limit", LP_ITERATION_LIMIT)
        # self.lp.solver_parameter("timelimit", LP_TIME_LIMIT)

    # add constraints once here
        # constraints
        self.alpha = self.lp.new_variable(dim=2)
        beta2 = self.lp.new_variable(dim=2)
        beta3 = self.lp.new_variable(dim=3)
        # alphas are indicator vars
        for a in self.author_graph:
            self.lp.add_constraint(sum(self.alpha[a][p] for p in self.parts) == 1)

        # beta2 is the sum of beta3s
        slog('Init LP - pair constraints')
        for a, b in self.author_graph.edges():
            if self.author_graph[a][b]['denom'] <= 2:
                continue
            self.lp.add_constraint(0.5 * sum(beta3[a][b][p] for p in self.parts) - beta2[a][b], min=0, max=0)
            for p in self.parts:
                self.lp.add_constraint(self.alpha[a][p] - self.alpha[b][p] - beta3[a][b][p], max=0)
                self.lp.add_constraint(self.alpha[b][p] - self.alpha[a][p] - beta3[a][b][p], max=0)

        # store indiv potential linear function as a dict to improve performance
        self.objF_indiv_dict = {}
        self.alpha_dict = {}
        for a in self.author_graph:
            self.alpha_dict[a] = {}
            for p in self.parts:
                var_id = self.alpha_dict[a][p] = self.alpha[a][p].dict().keys()[0]
                self.objF_indiv_dict[var_id] = 0        # init variables coeffs to zero

        # pairwise potentials
        slog('Obj func - pair potentials')
        objF_pair_dict = {}
        s = log(1 - self.TAU) - log(self.TAU)
        for a, b in self.author_graph.edges():
            if self.author_graph[a][b]['denom'] <= 2:
                continue
            var_id = beta2[a][b].dict().keys()[0]
            objF_pair_dict[var_id] = -self.author_graph[a][b]['weight'] * s
        self.objF_pair = self.lp(objF_pair_dict)

        self._lp_init = True
        slog('Init LP Done')

    def log_phi(self, a, p):
        author = self.author_graph.node[a]
        th = self.theta[p]
        res = th['logPr']
        if author['hlpful_fav_unfav']:
            res += th['logPrH']
        else:
            res += th['log1-PrH']
        if author['isRealName']:
            res += th['logPrR']
        else:
            res += th['log1-PrR']
        res += -((author['revLen'] - th['muL']) ** 2) / (2 * th['sigma2L'] + EPS) - (log_2pi + log(th['sigma2L'])) / 2.0
        return res

    def log_likelihood(self):
        ll = sum(self.log_phi(a, self.partition[a]) for a in self.author_graph.nodes())
        log_TAU, log_1_TAU = log(self.TAU), log(1 - self.TAU)
        for a, b in self.author_graph.edges():
            if self.partition[a] == self.partition[b]:
                ll += log_TAU * self.author_graph[a][b]['weight']
            else:
                ll += log_1_TAU * self.author_graph[a][b]['weight']
        return ll

    def e_step(self):
        slog('E-Step')
#.........这里部分代码省略.........

# 需要导入模块: from sage.numerical.mip import MixedIntegerLinearProgram [as 别名]
# 或者: from sage.numerical.mip.MixedIntegerLinearProgram import new_variable [as 别名]

#.........这里部分代码省略.........
	+        answering very quickly in some cases
	+        
	+        EXAMPLES:
	+
	+        The Steiner Tree of the first 5 vertices in a random graph is,
	+        of course, always a tree ::
	+
	+            sage: g = graphs.RandomGNP(30,.5)
	+            sage: st = g.steiner_tree(g.vertices()[:5])              # optional - requires GLPK, CBC or CPLEX
	+            sage: st.is_tree()                                       # optional - requires GLPK, CBC or CPLEX
	+            True
	+
	+        And all the 5 vertices are contained in this tree ::
	+

	+            sage: all([v in st for v in g.vertices()[:5] ])          # optional - requires GLPK, CBC or CPLEX
	+            True
	+
	+        An exception is raised when the problem is impossible, i.e.
	+        if the given vertices are not all included in the same
	+        connected component ::
	+
	+            sage: g = 2 * graphs.PetersenGraph()
	+            sage: st = g.steiner_tree([5,15])
	+            Traceback (most recent call last):
	+            ...
	+            ValueError: The given vertices do not all belong to the same connected component. This problem has no solution !
	+
	"""
	if G.is_directed():
		g = nx.Graph(G)
	else:
		g = G
	vertices=G.nodes()
	if g.has_multiple_edges():
		raise ValueError("The graph is expected not to have multiple edges.")
	# Can the problem be solved ? Are all the vertices in the same
	# connected component ?
	cc = g.connected_component_containing_vertex(vertices[0])
	if not all([v in cc for v in vertices]):
		raise ValueError("The given vertices do not all belong to the same connected component. This problem has no solution !")
	# Can it be solved using the min spanning tree algorithm ?
	if not weighted:
		gg = g.subgraph(vertices)
	if gg.is_connected():
		st = g.subgraph(edges = gg.min_spanning_tree())
		st.delete_vertices([v for v in g if st.degree(v) == 0])
		return st
	# Then, LP formulation
	p = MixedIntegerLinearProgram(maximization = False)
	
	# Reorder an edge
	R = lambda (x,y) : (x,y) if x<y else (y,x)
	
	
	# edges used in the Steiner Tree
	edges = p.new_variable()
	
	# relaxed edges to test for acyclicity
	r_edges = p.new_variable()

	# Whether a vertex is in the Steiner Tree
	vertex = p.new_variable()
	for v in g:
		for e in g.edges_incident(v, labels=False):
			p.add_constraint(vertex[v] - edges[R(e)], min = 0)
	
	# We must have the given vertices in our tree
	for v in vertices:
		p.add_constraint(sum([edges[R(e)] for e in g.edges_incident(v,labels=False)]), min=1)

	# The number of edges is equal to the number of vertices in our tree minus 1
	p.add_constraint(sum([vertex[v] for v in g]) - sum([edges[R(e)] for e in g.edges(labels=None)]), max = 1, min = 1)
	
	# There are no cycles in our graph
	
	for u,v in g.edges(labels = False):
		p.add_constraint( r_edges[(u,v)]+ r_edges[(v,u)] - edges[R((u,v))] , min = 0 )
		
	eps = 1/(5*Integer(g.order()))
	for v in g:
		p.add_constraint(sum([r_edges[(u,v)] for u in g.neighbors(v)]), max = 1-eps)
		
		
	# Objective
	if weighted:
		w = lambda (x,y) : g.edge_label(x,y) if g.edge_label(x,y) is not None else 1
	else:
		w = lambda (x,y) : 1
		
	p.set_objective(sum([w(e)*edges[R(e)] for e in g.edges(labels = False)]))
	
	p.set_binary(edges)     
	p.solve()
	
	edges = p.get_values(edges)
	
	st =  g.subgraph(edges=[e for e in g.edges(labels = False) if edges[R(e)] == 1])
	st.delete_vertices([v for v in g if st.degree(v) == 0])
	return st