本文整理汇总了Python中rgt.GenomicRegionSet.GenomicRegionSet.sequences方法的典型用法代码示例。如果您正苦于以下问题：Python GenomicRegionSet.sequences方法的具体用法？Python GenomicRegionSet.sequences怎么用？Python GenomicRegionSet.sequences使用的例子？那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类rgt.GenomicRegionSet.GenomicRegionSet的用法示例。
在下文中一共展示了GenomicRegionSet.sequences方法的1个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: dbd_regions
# 需要导入模块: from rgt.GenomicRegionSet import GenomicRegionSet [as 别名]
# 或者: from rgt.GenomicRegionSet.GenomicRegionSet import sequences [as 别名]
def dbd_regions(self, sig_region, output):
"""Generate the BED file of significant DBD regions and FASTA file of the sequences"""
dbd_regions(exons=self.rna_regions, sig_region=sig_region, rna_name=self.rna_name, output=output)
self.stat["DBD_all"] = str(len(self.rbss))
self.stat["DBD_sig"] = str(len(self.data["region"]["sig_region"]))
sigDBD = GenomicRegionSet("DBD_sig")
sigDBD.sequences = self.data["region"]["sig_region"]
rbss = self.txp.get_rbs()
overlaps = rbss.intersect(y=sigDBD, mode=OverlapType.ORIGINAL)
self.stat["DBSs_target_DBD_sig"] = str(len(overlaps))