本文整理汇总了Python中qiita_db.job.Job.set_error方法的典型用法代码示例。如果您正苦于以下问题：Python Job.set_error方法的具体用法？Python Job.set_error怎么用？Python Job.set_error使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类qiita_db.job.Job的用法示例。
在下文中一共展示了Job.set_error方法的2个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: system_call_from_job
# 需要导入模块: from qiita_db.job import Job [as 别名]
# 或者: from qiita_db.job.Job import set_error [as 别名]
def system_call_from_job(job_id, **kwargs):
"""Executes a system call described by a Job
Parameters
----------
job_id : int
The job object ID
"""
job = Job(job_id)
name, command = job.command
options = job.options
cmd = [command]
cmd.extend(flatten(options.items()))
cmd_fmt = ' '.join((str(i) for i in cmd))
try:
so, se, status = system_call(cmd_fmt)
except Exception as e:
job.set_error(str(e))
raise
# FIX THIS add_results should not be hard coded Issue #269
job.add_results([(job.options["--output_dir"], "directory")])示例2: JobTest
# 需要导入模块: from qiita_db.job import Job [as 别名]
# 或者: from qiita_db.job.Job import set_error [as 别名]
#.........这里部分代码省略.........
def test_create_exists_return_existing(self):
"""Makes sure creation doesn't duplicate a job by returning existing"""
Analysis.create(User("[email protected]"), "new", "desc")
self.conn_handler.execute(
"INSERT INTO qiita.analysis_sample "
"(analysis_id, processed_data_id, sample_id) VALUES "
"(3, 1, '1.SKB8.640193'), (3, 1, '1.SKD8.640184'), "
"(3, 1, '1.SKB7.640196'), (3, 1, '1.SKM9.640192'), "
"(3, 1, '1.SKM4.640180')")
new = Job.create("18S", "Beta Diversity",
{"--otu_table_fp": 1, "--mapping_fp": 1},
Analysis(3), return_existing=True)
self.assertEqual(new.id, 2)
def test_retrieve_datatype(self):
"""Makes sure datatype retrieval is correct"""
self.assertEqual(self.job.datatype, '18S')
def test_retrieve_command(self):
"""Makes sure command retrieval is correct"""
self.assertEqual(self.job.command, ['Summarize Taxa',
'summarize_taxa_through_plots.py'])
def test_retrieve_options(self):
self.assertEqual(self.job.options, {
'--otu_table_fp': 1,
'--output_dir': join(
self._job_folder,
'1_summarize_taxa_through_plots.py_output_dir')})
def test_set_options(self):
new = Job.create("18S", "Alpha Rarefaction", {"opt1": 4}, Analysis(1))
new.options = self.options
self.options['--output_dir'] = join(self._job_folder,
'4_alpha_rarefaction.'
'py_output_dir')
self.assertEqual(new.options, self.options)
def test_retrieve_results(self):
self.assertEqual(self.job.results, ["1_job_result.txt"])
def test_retrieve_results_folder(self):
job = Job(2)
self.assertEqual(job.results, ['2_test_folder/testres.htm',
'2_test_folder/subdir/subres.html'])
def test_retrieve_results_empty(self):
new = Job.create("18S", "Beta Diversity", {"opt1": 4}, Analysis(1))
self.assertEqual(new.results, [])
def test_set_error(self):
before = datetime.now()
self.job.set_error("TESTERROR")
after = datetime.now()
self.assertEqual(self.job.status, "error")
error = self.job.error
self.assertEqual(error.severity, 2)
self.assertEqual(error.msg, 'TESTERROR')
self.assertTrue(before < error.time < after)
def test_retrieve_error_blank(self):
self.assertEqual(self.job.error, None)
def test_set_error_completed(self):
self.job.status = "error"
with self.assertRaises(QiitaDBStatusError):
self.job.set_error("TESTERROR")
def test_retrieve_error_exists(self):
self.job.set_error("TESTERROR")
self.assertEqual(self.job.error.msg, "TESTERROR")
def test_add_results(self):
self.job.add_results([(join(self._job_folder, "1_job_result.txt"),
"plain_text")])
# make sure files attached to job properly
obs = self.conn_handler.execute_fetchall(
"SELECT * FROM qiita.job_results_filepath WHERE job_id = 1")
self.assertEqual(obs, [[1, 12], [1, 19]])
def test_add_results_dir(self):
# Create a test directory
test_dir = join(self._job_folder, "2_test_folder")
# add folder to job
self.job.add_results([(test_dir, "directory")])
# make sure files attached to job properly
obs = self.conn_handler.execute_fetchall(
"SELECT * FROM qiita.job_results_filepath WHERE job_id = 1")
self.assertEqual(obs, [[1, 12], [1, 19]])
def test_add_results_completed(self):
self.job.status = "completed"
with self.assertRaises(QiitaDBStatusError):
self.job.add_results([("/fake/dir/", "directory")])