本文整理汇总了Python中prov.model.ProvDocument.wasDerivedFrom方法的典型用法代码示例。如果您正苦于以下问题：Python ProvDocument.wasDerivedFrom方法的具体用法？Python ProvDocument.wasDerivedFrom怎么用？Python ProvDocument.wasDerivedFrom使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类prov.model.ProvDocument的用法示例。
在下文中一共展示了ProvDocument.wasDerivedFrom方法的5个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: deriveDependency
# 需要导入模块: from prov.model import ProvDocument [as 别名]
# 或者: from prov.model.ProvDocument import wasDerivedFrom [as 别名]
def deriveDependency(self, aDO, aRO, derivedList):
d1 = ProvDocument() # d1 is now an empty provenance document
d1.add_namespace("dt", "http://cs.ncl.ac.uk/dtsim/")
e1 = d1.entity(DTns + aRO.id) # deriving
ag1 = d1.agent(DTns + str(aDO.id))
for der in derivedList:
# create provlet
e2 = d1.entity(DTns + der.id) # derived
d1.wasAttributedTo(e2, ag1)
d1.wasDerivedFrom(e2, e1)
# update upstream pointer
der.upstream = [(aRO, None)] # aRO is upstream from aRO with no activity
# update downstream
aRO.downstream.append((der, None)) # aR1 is downstream from aR1 with no activity
# update global graph
e1 = pGlobal.entity(DTns + aRO.id) # deriving
ag1 = pGlobal.agent(DTns + str(aDO.id))
pGlobal.wasAttributedTo(e2, ag1)
for der in derivedList:
e2 = pGlobal.entity(DTns + der.id) # derived
pGlobal.wasDerivedFrom(e2, e1)
# trigger credit recomputation
for der in derivedList:
# aRO needs its credit updated with aRO1.credit
aCreditManager.addDerivationCredit(aRO, der.currentTotalCredit)
# self.notify(d1)
return d1示例2: primer_example
# 需要导入模块: from prov.model import ProvDocument [as 别名]
# 或者: from prov.model.ProvDocument import wasDerivedFrom [as 别名]
def primer_example():
# https://github.com/lucmoreau/ProvToolbox/blob/master/prov-n/src/test/resources/prov/primer.pn
#===========================================================================
# document
g = ProvDocument()
# prefix ex <http://example/>
# prefix dcterms <http://purl.org/dc/terms/>
# prefix foaf <http://xmlns.com/foaf/0.1/>
ex = Namespace('ex', 'http://example/') # namespaces do not need to be explicitly added to a document
g.add_namespace("dcterms", "http://purl.org/dc/terms/")
g.add_namespace("foaf", "http://xmlns.com/foaf/0.1/")
# entity(ex:article, [dcterms:title="Crime rises in cities"])
# first time the ex namespace was used, it is added to the document automatically
g.entity(ex['article'], {'dcterms:title': "Crime rises in cities"})
# entity(ex:articleV1)
g.entity(ex['articleV1'])
# entity(ex:articleV2)
g.entity(ex['articleV2'])
# entity(ex:dataSet1)
g.entity(ex['dataSet1'])
# entity(ex:dataSet2)
g.entity(ex['dataSet2'])
# entity(ex:regionList)
g.entity(ex['regionList'])
# entity(ex:composition)
g.entity(ex['composition'])
# entity(ex:chart1)
g.entity(ex['chart1'])
# entity(ex:chart2)
g.entity(ex['chart2'])
# entity(ex:blogEntry)
g.entity(ex['blogEntry'])
# activity(ex:compile)
g.activity('ex:compile') # since ex is registered, it can be used like this
# activity(ex:compile2)
g.activity('ex:compile2')
# activity(ex:compose)
g.activity('ex:compose')
# activity(ex:correct, 2012-03-31T09:21:00, 2012-04-01T15:21:00)
g.activity('ex:correct', '2012-03-31T09:21:00', '2012-04-01T15:21:00') # date time can be provided as strings
# activity(ex:illustrate)
g.activity('ex:illustrate')
# used(ex:compose, ex:dataSet1, -, [ prov:role = "ex:dataToCompose"])
g.used('ex:compose', 'ex:dataSet1', other_attributes={'prov:role': "ex:dataToCompose"})
# used(ex:compose, ex:regionList, -, [ prov:role = "ex:regionsToAggregateBy"])
g.used('ex:compose', 'ex:regionList', other_attributes={'prov:role': "ex:regionsToAggregateBy"})
# wasGeneratedBy(ex:composition, ex:compose, -)
g.wasGeneratedBy('ex:composition', 'ex:compose')
# used(ex:illustrate, ex:composition, -)
g.used('ex:illustrate', 'ex:composition')
# wasGeneratedBy(ex:chart1, ex:illustrate, -)
g.wasGeneratedBy('ex:chart1', 'ex:illustrate')
# wasGeneratedBy(ex:chart1, ex:compile, 2012-03-02T10:30:00)
g.wasGeneratedBy('ex:chart1', 'ex:compile', '2012-03-02T10:30:00')
# wasGeneratedBy(ex:chart2, ex:compile2, 2012-04-01T15:21:00)
#
#
# agent(ex:derek, [ prov:type="prov:Person", foaf:givenName = "Derek",
# foaf:mbox= "<mailto:[email protected]>"])
g.agent('ex:derek', {
'prov:type': PROV["Person"], 'foaf:givenName': "Derek", 'foaf:mbox': "<mailto:[email protected]>"
})
# wasAssociatedWith(ex:compose, ex:derek, -)
g.wasAssociatedWith('ex:compose', 'ex:derek')
# wasAssociatedWith(ex:illustrate, ex:derek, -)
g.wasAssociatedWith('ex:illustrate', 'ex:derek')
#
# agent(ex:chartgen, [ prov:type="prov:Organization",
# foaf:name = "Chart Generators Inc"])
g.agent('ex:chartgen', {'prov:type': PROV["Organization"], 'foaf:name': "Chart Generators Inc"})
# actedOnBehalfOf(ex:derek, ex:chartgen, ex:compose)
g.actedOnBehalfOf('ex:derek', 'ex:chartgen', 'ex:compose')
# wasAttributedTo(ex:chart1, ex:derek)
g.wasAttributedTo('ex:chart1', 'ex:derek')
# wasGeneratedBy(ex:dataSet2, ex:correct, -)
g.wasGeneratedBy('ex:dataSet2', 'ex:correct')
# used(ex:correct, ex:dataSet1, -)
g.used('ex:correct', 'ex:dataSet1')
# wasDerivedFrom(ex:dataSet2, ex:dataSet1, [prov:type='prov:Revision'])
g.wasDerivedFrom('ex:dataSet2', 'ex:dataSet1', other_attributes={'prov:type': PROV['Revision']})
# wasDerivedFrom(ex:chart2, ex:dataSet2)
g.wasDerivedFrom('ex:chart2', 'ex:dataSet2')
# wasDerivedFrom(ex:blogEntry, ex:article, [prov:type='prov:Quotation'])
g.wasDerivedFrom('ex:blogEntry', 'ex:article', other_attributes={'prov:type': PROV['Quotation']})
# specializationOf(ex:articleV1, ex:article)
g.specializationOf('ex:articleV1', 'ex:article')
# wasDerivedFrom(ex:articleV1, ex:dataSet1)
g.wasDerivedFrom('ex:articleV1', 'ex:dataSet1')
# specializationOf(ex:articleV2, ex:article)
g.specializationOf('ex:articleV2', 'ex:article')
# wasDerivedFrom(ex:articleV2, ex:dataSet2)
#.........这里部分代码省略.........
示例3: w3c_publication_2
# 需要导入模块: from prov.model import ProvDocument [as 别名]
# 或者: from prov.model.ProvDocument import wasDerivedFrom [as 别名]
def w3c_publication_2():
# https://github.com/lucmoreau/ProvToolbox/blob/master/asn/src/test/resources/prov/w3c-publication2.prov-asn
#===========================================================================
# bundle
#
# prefix ex <http://example.org/>
# prefix rec <http://example.org/record>
#
# prefix w3 <http://www.w3.org/TR/2011/>
# prefix hg <http://dvcs.w3.org/hg/prov/raw-file/9628aaff6e20/model/releases/WD-prov-dm-20111215/>
#
#
# entity(hg:Overview.html, [ prov:type="file in hg" ])
# entity(w3:WD-prov-dm-20111215, [ prov:type="html4" ])
#
#
# activity(ex:rcp,-,-,[prov:type="copy directory"])
#
# wasGeneratedBy(rec:g; w3:WD-prov-dm-20111215, ex:rcp, -)
#
# entity(ex:req3, [ prov:type="http://www.w3.org/2005/08/01-transitions.html#pubreq" %% xsd:anyURI ])
#
# used(rec:u; ex:rcp,hg:Overview.html,-)
# used(ex:rcp, ex:req3, -)
#
#
# wasDerivedFrom(w3:WD-prov-dm-20111215, hg:Overview.html, ex:rcp, rec:g, rec:u)
#
# agent(ex:webmaster, [ prov:type='prov:Person' ])
#
# wasAssociatedWith(ex:rcp, ex:webmaster, -)
#
# endBundle
#===========================================================================
ex = Namespace('ex', 'http://example.org/')
rec = Namespace('rec', 'http://example.org/record')
w3 = Namespace('w3', 'http://www.w3.org/TR/2011/')
hg = Namespace('hg', 'http://dvcs.w3.org/hg/prov/raw-file/9628aaff6e20/model/releases/WD-prov-dm-20111215/')
g = ProvDocument()
g.entity(hg['Overview.html'], {'prov:type': "file in hg"})
g.entity(w3['WD-prov-dm-20111215'], {'prov:type': "html4"})
g.activity(ex['rcp'], None, None, {'prov:type': "copy directory"})
g.wasGeneratedBy('w3:WD-prov-dm-20111215', 'ex:rcp', identifier=rec['g'])
g.entity('ex:req3', {'prov:type': Identifier("http://www.w3.org/2005/08/01-transitions.html#pubreq")})
g.used('ex:rcp', 'hg:Overview.html', identifier='rec:u')
g.used('ex:rcp', 'ex:req3')
g.wasDerivedFrom('w3:WD-prov-dm-20111215', 'hg:Overview.html', 'ex:rcp', 'rec:g', 'rec:u')
g.agent('ex:webmaster', {'prov:type': "Person"})
g.wasAssociatedWith('ex:rcp', 'ex:webmaster')
return g示例4: w3c_publication_1
# 需要导入模块: from prov.model import ProvDocument [as 别名]
# 或者: from prov.model.ProvDocument import wasDerivedFrom [as 别名]
def w3c_publication_1():
# https://github.com/lucmoreau/ProvToolbox/blob/master/asn/src/test/resources/prov/w3c-publication1.prov-asn
#===========================================================================
# bundle
#
# prefix ex <http://example.org/>
#
# prefix w3 <http://www.w3.org/>
# prefix tr <http://www.w3.org/TR/2011/>
# prefix process <http://www.w3.org/2005/10/Process-20051014/tr.html#>
# prefix email <https://lists.w3.org/Archives/Member/w3c-archive/>
# prefix chairs <https://lists.w3.org/Archives/Member/chairs/>
# prefix trans <http://www.w3.org/2005/08/01-transitions.html#>
# prefix rec54 <http://www.w3.org/2001/02pd/rec54#>
#
#
# entity(tr:WD-prov-dm-20111018, [ prov:type='rec54:WD' ])
# entity(tr:WD-prov-dm-20111215, [ prov:type='rec54:WD' ])
# entity(process:rec-advance, [ prov:type='prov:Plan' ])
#
#
# entity(chairs:2011OctDec/0004, [ prov:type='trans:transreq' ])
# entity(email:2011Oct/0141, [ prov:type='trans:pubreq' ])
# entity(email:2011Dec/0111, [ prov:type='trans:pubreq' ])
#
#
# wasDerivedFrom(tr:WD-prov-dm-20111215, tr:WD-prov-dm-20111018)
#
#
# activity(ex:act1,-,-,[prov:type="publish"])
# activity(ex:act2,-,-,[prov:type="publish"])
#
# wasGeneratedBy(tr:WD-prov-dm-20111018, ex:act1, -)
# wasGeneratedBy(tr:WD-prov-dm-20111215, ex:act2, -)
#
# used(ex:act1, chairs:2011OctDec/0004, -)
# used(ex:act1, email:2011Oct/0141, -)
# used(ex:act2, email:2011Dec/0111, -)
#
# agent(w3:Consortium, [ prov:type='prov:Organization' ])
#
# wasAssociatedWith(ex:act1, w3:Consortium, process:rec-advance)
# wasAssociatedWith(ex:act2, w3:Consortium, process:rec-advance)
#
# endBundle
#===========================================================================
g = ProvDocument()
g.add_namespace('ex', 'http://example.org/')
g.add_namespace('w3', 'http://www.w3.org/')
g.add_namespace('tr', 'http://www.w3.org/TR/2011/')
g.add_namespace('process', 'http://www.w3.org/2005/10/Process-20051014/tr.html#')
g.add_namespace('email', 'https://lists.w3.org/Archives/Member/w3c-archive/')
g.add_namespace('chairs', 'https://lists.w3.org/Archives/Member/chairs/')
g.add_namespace('trans', 'http://www.w3.org/2005/08/01-transitions.html#')
g.add_namespace('rec54', 'http://www.w3.org/2001/02pd/rec54#')
g.entity('tr:WD-prov-dm-20111018', {'prov:type': 'rec54:WD'})
g.entity('tr:WD-prov-dm-20111215', {'prov:type': 'rec54:WD'})
g.entity('process:rec-advance', {'prov:type': 'prov:Plan'})
g.entity('chairs:2011OctDec/0004', {'prov:type': 'trans:transreq'})
g.entity('email:2011Oct/0141', {'prov:type': 'trans:pubreq'})
g.entity('email:2011Dec/0111', {'prov:type': 'trans:pubreq'})
g.wasDerivedFrom('tr:WD-prov-dm-20111215', 'tr:WD-prov-dm-20111018')
g.activity('ex:act1', other_attributes={'prov:type': "publish"})
g.activity('ex:act2', other_attributes={'prov:type': "publish"})
g.wasGeneratedBy('tr:WD-prov-dm-20111018', 'ex:act1')
g.wasGeneratedBy('tr:WD-prov-dm-20111215', 'ex:act2')
g.used('ex:act1', 'chairs:2011OctDec/0004')
g.used('ex:act1', 'email:2011Oct/0141')
g.used('ex:act2', 'email:2011Dec/0111')
g.agent('w3:Consortium', other_attributes={'prov:type': "Organization"})
g.wasAssociatedWith('ex:act1', 'w3:Consortium', 'process:rec-advance')
g.wasAssociatedWith('ex:act2', 'w3:Consortium', 'process:rec-advance')
return g示例5: example
# 需要导入模块: from prov.model import ProvDocument [as 别名]
# 或者: from prov.model.ProvDocument import wasDerivedFrom [as 别名]
def example():
g = ProvDocument()
# Local namespace
# Doesnt exist yet so we are creating it
ap = Namespace('aip', 'https://araport.org/provenance/')
# Dublin Core
g.add_namespace("dcterms", "http://purl.org/dc/terms/")
# FOAF
g.add_namespace("foaf", "http://xmlns.com/foaf/0.1/")
# Add sponsors and contributors as Agents
# ap['matthew_vaughn']
# aip:matthew_vaughn
# https://araport.org/provenance/:matthew_vaughn
# Learn this from a call to profiles service? Adds a dependency on Agave so I am open to figuring out another way
me = g.agent(ap['matthew_vaughn'], {
'prov:type': PROV["Person"], 'foaf:givenName': "Matthew Vaughn", 'foaf:mbox': "<mailto:[email protected]>"
})
# Hard coded for now
walter = g.agent(ap['walter_moreira'], {
'prov:type': PROV["Person"], 'foaf:givenName': "Walter Moreira", 'foaf:mbox': "<mailto:[email protected]>"
})
utexas = g.agent(ap['university_of_texas'], {
'prov:type': PROV["Organization"], 'foaf:givenName': "University of Texas at Austin"
})
# Set delegation to our host University
# We may have trouble doing this for other users since we don't always capture their host instituion
g.actedOnBehalfOf(walter, utexas)
g.actedOnBehalfOf(me, utexas)
# Include the ADAMA platform as an Agent and set attribution
# dcterms:title and dcterms:description are hardcoded
# dcterms:language is hard-coded
# dcterms:source is the URI of the public git source repository for ADAMA
# "dcterms:updated": "2015-04-17T09:44:56" - this would actually be the date ADAMA was updated
adama_platform = g.agent(ap['adama_platform'], {'dcterms:title': "ADAMA", 'dcterms:description': "Araport Data and Microservices API", 'dcterms:language':"en-US", 'dcterms:identifier':"https://api.araport.org/community/v0.3/", 'dcterms:updated': "2015-04-17T09:44:56" })
g.wasGeneratedBy(adama_platform, walter)
# Include the ADAMA microservice as an Agent and set attribution+delegation
# dcterms:title and dcterms:description are inherited from the service's metadata
# dcterms:language is hard-coded
# dcterms:identifier is the deployment URI for the service
# dcterms:source is the URI of the public git source repository. The URL in this example is just a dummy
#
# The name for each microservice should be unique. We've decided to
# use the combination of namespace, service name, and version
microservice_name = 'mwvaughn/bar_annotation_v1.0.0'
adama_microservice = g.agent(ap[microservice_name], {'dcterms:title': "BAR Annotation Service", 'dcterms:description': "Returns annotation from locus ID", 'dcterms:language':"en-US", 'dcterms:identifier':"https://api.araport.org/community/v0.3/mwvaughn/bar_annotation_v1.0.0", 'dcterms:source':"https://github.com/Arabidopsis-Information-Portal/prov-enabled-api-sample" })
# the microservice was generated by me on date X (don't use now, use when the service was updated)
g.wasGeneratedBy(adama_microservice, me, datetime.datetime.now())
# The microservice used the platform now
g.used(adama_microservice, adama_platform, datetime.datetime.now())
# Sources
#
# Define BAR
# Agents
nick = g.agent(ap['nicholas_provart'], {
'prov:type': PROV["Person"], 'foaf:givenName': "Nicholas Provart", 'foaf:mbox': "[email protected]"
})
utoronto = g.agent(ap['university_of_toronto'], {
'prov:type': PROV["Organization"], 'foaf:givenName': "University of Toronto", 'dcterms:identifier':"http://www.utoronto.ca/"
})
g.actedOnBehalfOf(nick, utoronto)
# Entity
# All fields derived from Sources.yml
# dcterms:title and dcterms:description come straight from the YAML
# dcterms:identifier - URI pointing to the source's canonical URI representation
# optional - dcterms:language: Recommended best practice is to use a controlled vocabulary such as RFC 4646
# optional - dcterms:updated: date the source was published or last updated
# optional - dcterms:license: Simple string or URI to license. Validate URI if provided?
datasource1 = g.entity(ap['datasource1'], {'dcterms:title': "BAR Arabidopsis AGI -> Annotation", 'dcterms:description': "Most recent annotation for given AGI", 'dcterms:language':"en-US", 'dcterms:identifier':"http://bar.utoronto.ca/webservices/agiToAnnot.php", 'dcterms:updated':"2015-04-17T09:44:56", 'dcterms:license':"Creative Commons 3.0" })
# Set up attribution to Nick
g.wasAttributedTo(datasource1, nick)
# Define TAIR
# Agents
# dcterms:language: Recommended best practice is to use a controlled vocabulary such as RFC 4646
eva = g.agent(ap['eva_huala'], {
'prov:type': PROV["Person"], 'foaf:givenName': "Eva Huala"
})
phoenix = g.agent(ap['phoenix_bioinformatics'], {
'prov:type': PROV["Organization"], 'foaf:givenName': "Phoenix Bioinformatics"
})
g.actedOnBehalfOf(eva, phoenix)
# Entity
# All fields derived from Sources.yml
# optional - dcterms:citation: Plain text bibliographic citation. If only provided as doi, should we try to validate it?
datasource2 = g.entity(ap['datasource2'], {'dcterms:title': "TAIR", 'dcterms:description': "The Arabidopsis Information Resource", 'dcterms:language':"en-US", 'dcterms:identifier':"https://www.arabidopsis.org/", 'dcterms:citation':"The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools. Nucleic Acids Research 2011 doi: 10.1093/nar/gkr1090"})
g.wasAttributedTo(datasource2, eva)
# In Sources.yml, these two sources are nested. Define that relationship here
# There are other types of relationships but we will just use derived from for simplicity in this prototype
g.wasDerivedFrom(ap['datasource1'], ap['datasource2'])
#.........这里部分代码省略.........