本文整理汇总了Python中pbcore.io.SubreadSet.totalLength方法的典型用法代码示例。如果您正苦于以下问题：Python SubreadSet.totalLength方法的具体用法？Python SubreadSet.totalLength怎么用？Python SubreadSet.totalLength使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类pbcore.io.SubreadSet的用法示例。
在下文中一共展示了SubreadSet.totalLength方法的2个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: test_len
# 需要导入模块: from pbcore.io import SubreadSet [as 别名]
# 或者: from pbcore.io.SubreadSet import totalLength [as 别名]
def test_len(self):
# AlignmentSet
aln = AlignmentSet(data.getXml(8), strict=True)
self.assertEqual(len(aln), 92)
self.assertEqual(aln._length, (92, 123588))
self.assertEqual(aln.totalLength, 123588)
self.assertEqual(aln.numRecords, 92)
aln.totalLength = -1
aln.numRecords = -1
self.assertEqual(aln.totalLength, -1)
self.assertEqual(aln.numRecords, -1)
aln.updateCounts()
self.assertEqual(aln.totalLength, 123588)
self.assertEqual(aln.numRecords, 92)
self.assertEqual(sum(1 for _ in aln), 92)
self.assertEqual(sum(len(rec) for rec in aln), 123588)
# AlignmentSet with filters
aln = AlignmentSet(data.getXml(15), strict=True)
self.assertEqual(len(aln), 40)
self.assertEqual(aln._length, (40, 52023))
self.assertEqual(aln.totalLength, 52023)
self.assertEqual(aln.numRecords, 40)
aln.totalLength = -1
aln.numRecords = -1
self.assertEqual(aln.totalLength, -1)
self.assertEqual(aln.numRecords, -1)
aln.updateCounts()
self.assertEqual(aln.totalLength, 52023)
self.assertEqual(aln.numRecords, 40)
# SubreadSet
sset = SubreadSet(data.getXml(10), strict=True)
self.assertEqual(len(sset), 92)
self.assertEqual(sset._length, (92, 124093))
self.assertEqual(sset.totalLength, 124093)
self.assertEqual(sset.numRecords, 92)
sset.totalLength = -1
sset.numRecords = -1
self.assertEqual(sset.totalLength, -1)
self.assertEqual(sset.numRecords, -1)
sset.updateCounts()
self.assertEqual(sset.totalLength, 124093)
self.assertEqual(sset.numRecords, 92)
self.assertEqual(sum(1 for _ in sset), 92)
self.assertEqual(sum(len(rec) for rec in sset), 124093)
# ReferenceSet
sset = ReferenceSet(data.getXml(9), strict=True)
self.assertEqual(len(sset), 59)
self.assertEqual(sset.totalLength, 85774)
self.assertEqual(sset.numRecords, 59)
sset.totalLength = -1
sset.numRecords = -1
self.assertEqual(sset.totalLength, -1)
self.assertEqual(sset.numRecords, -1)
sset.updateCounts()
self.assertEqual(sset.totalLength, 85774)
self.assertEqual(sset.numRecords, 59)示例2: test_len
# 需要导入模块: from pbcore.io import SubreadSet [as 别名]
# 或者: from pbcore.io.SubreadSet import totalLength [as 别名]
def test_len(self):
# AlignmentSet
aln = AlignmentSet(data.getXml(8), strict=True)
self.assertEqual(len(aln), 92)
self.assertEqual(aln._length, (92, 123588))
self.assertEqual(aln.totalLength, 123588)
self.assertEqual(aln.numRecords, 92)
aln.totalLength = -1
aln.numRecords = -1
self.assertEqual(aln.totalLength, -1)
self.assertEqual(aln.numRecords, -1)
aln.updateCounts()
self.assertEqual(aln.totalLength, 123588)
self.assertEqual(aln.numRecords, 92)
self.assertEqual(sum(1 for _ in aln), 92)
self.assertEqual(sum(len(rec) for rec in aln), 123588)
# AlignmentSet with filters
aln = AlignmentSet(data.getXml(15), strict=True)
self.assertEqual(len(aln), 40)
self.assertEqual(aln._length, (40, 52023))
self.assertEqual(aln.totalLength, 52023)
self.assertEqual(aln.numRecords, 40)
aln.totalLength = -1
aln.numRecords = -1
self.assertEqual(aln.totalLength, -1)
self.assertEqual(aln.numRecords, -1)
aln.updateCounts()
self.assertEqual(aln.totalLength, 52023)
self.assertEqual(aln.numRecords, 40)
# AlignmentSet with cmp.h5
aln = AlignmentSet(upstreamData.getBamAndCmpH5()[1], strict=True)
self.assertEqual(len(aln), 112)
self.assertEqual(aln._length, (112, 59970))
self.assertEqual(aln.totalLength, 59970)
self.assertEqual(aln.numRecords, 112)
aln.totalLength = -1
aln.numRecords = -1
self.assertEqual(aln.totalLength, -1)
self.assertEqual(aln.numRecords, -1)
aln.updateCounts()
self.assertEqual(aln.totalLength, 59970)
self.assertEqual(aln.numRecords, 112)
# SubreadSet
sset = SubreadSet(data.getXml(10), strict=True)
self.assertEqual(len(sset), 92)
self.assertEqual(sset._length, (92, 124093))
self.assertEqual(sset.totalLength, 124093)
self.assertEqual(sset.numRecords, 92)
sset.totalLength = -1
sset.numRecords = -1
self.assertEqual(sset.totalLength, -1)
self.assertEqual(sset.numRecords, -1)
sset.updateCounts()
self.assertEqual(sset.totalLength, 124093)
self.assertEqual(sset.numRecords, 92)
self.assertEqual(sum(1 for _ in sset), 92)
self.assertEqual(sum(len(rec) for rec in sset), 124093)
# HdfSubreadSet
# len means something else in bax/bas land. These numbers may actually
# be correct...
sset = HdfSubreadSet(data.getXml(17), strict=True)
self.assertEqual(len(sset), 9)
self.assertEqual(sset._length, (9, 128093))
self.assertEqual(sset.totalLength, 128093)
self.assertEqual(sset.numRecords, 9)
sset.totalLength = -1
sset.numRecords = -1
self.assertEqual(sset.totalLength, -1)
self.assertEqual(sset.numRecords, -1)
sset.updateCounts()
self.assertEqual(sset.totalLength, 128093)
self.assertEqual(sset.numRecords, 9)
# ReferenceSet
sset = ReferenceSet(data.getXml(9), strict=True)
self.assertEqual(len(sset), 59)
self.assertEqual(sset.totalLength, 85774)
self.assertEqual(sset.numRecords, 59)
sset.totalLength = -1
sset.numRecords = -1
self.assertEqual(sset.totalLength, -1)
self.assertEqual(sset.numRecords, -1)
sset.updateCounts()
self.assertEqual(sset.totalLength, 85774)
self.assertEqual(sset.numRecords, 59)