本文整理汇总了Python中ete_dev.Tree.dist方法的典型用法代码示例。如果您正苦于以下问题：Python Tree.dist方法的具体用法？Python Tree.dist怎么用？Python Tree.dist使用的例子？那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类ete_dev.Tree的用法示例。
在下文中一共展示了Tree.dist方法的4个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: test
# 需要导入模块: from ete_dev import Tree [as 别名]
# 或者: from ete_dev.Tree import dist [as 别名]
def test(self):
# Text faces
I = TreeImage()
I.mode = "rect"
I.aligned_header.add_face(self.headerF, 0)
I.aligned_header.add_face(self.headerF, 1)
I.aligned_header.add_face(self.headerF, 2)
I.aligned_header.add_face(self.headerF, 3)
I.aligned_foot.add_face(self.footF, 0)
I.aligned_foot.add_face(self.footF, 1)
I.aligned_foot.add_face(self.footF, 2)
I.aligned_foot.add_face(self.footF, 3)
I.draw_aligned_faces_as_grid = True
t = Tree()
t.dist = 0
t.populate(10)
style = NodeStyleDict()
style["fgcolor"] = "#ff0000"
style["size"] = 20
style.add_fixed_face(self.fixedF, "branch-right", 0)
t.img_style = style
t.render("./test.svg", layout=mylayout, tree_style=I)
t.show(mylayout, tree_style=I)
t.show(mylayout2, tree_style=I)示例2: Tree
# 需要导入模块: from ete_dev import Tree [as 别名]
# 或者: from ete_dev.Tree import dist [as 别名]
# same directory in which it is
ETEPATH = os.path.abspath(os.path.split(os.path.realpath(__file__))[0]+'/../')
sys.path.insert(0, ETEPATH)
from ete_dev import Tree, TreeStyle, NodeStyle, PhyloTree, faces
from ete_dev.treeview.faces import *
from ete_dev.treeview.main import random_color, _NODE_TYPE_CHECKER, FACE_POSITIONS
sys.path.insert(0, os.path.join(ETEPATH, "examples/treeview"))
import face_grid, bubble_map, item_faces, node_style, node_background, face_positions, face_rotation, seq_motif_faces, barchart_and_piechart_faces
sys.path.insert(0, os.path.join(ETEPATH, "examples/phylogenies"))
import phylotree_visualization
main_tree = Tree()
main_tree.dist = 0
t, ts = face_grid.get_example_tree()
t_grid = TreeFace(t, ts)
n = main_tree.add_child()
n.add_face(t_grid, 0, "aligned")
t, ts = bubble_map.get_example_tree()
t_bubble = TreeFace(t, ts)
n = main_tree.add_child()
n.add_face(t_bubble, 0, "aligned")
t, ts = item_faces.get_example_tree()
t_items = TreeFace(t, ts)
n = main_tree.add_child()
n.add_face(t_items, 0, "aligned")示例3: TreeStyle
# 需要导入模块: from ete_dev import Tree [as 别名]
# 或者: from ete_dev.Tree import dist [as 别名]
#if node.is_leaf():
# f = faces.CircleFace(50, "red")
# faces.add_face_to_node(f, node, 0, position="aligned")
ts = TreeStyle()
ts.mode = "c"
ts.arc_span = 360
ts.layout_fn = layout
ts.show_leaf_name = False
ts.show_border = True
ts.draw_guiding_lines = False
ts.show_scale = True
#ts.scale = 60
t = Tree()
t.dist = 0
t.size = 0,0
for x in xrange(100):
n = t.add_child()
n = n.add_child()
n = n.add_child()
n2 = n.add_child()
n3 = n.add_child()
n4 = n2.add_child()
n5 = n3.add_child()
# n.size = (10, 10)
# n2.size = (10, 70)
# n3.size = (40, 40)
# n4.size = (10, 10)
#n2.size = 10示例4: random_color
# 需要导入模块: from ete_dev import Tree [as 别名]
# 或者: from ete_dev.Tree import dist [as 别名]
# faces.add_face_to_node(f, node, 0, position="branch-right")
f.border.width = 0
# node.img_style["bgcolor"] = random_color()
# Tree().show()
ts = TreeStyle()
ts.mode = "c"
ts.layout_fn = layout
ts.show_leaf_name = False
ts.arc_span = 340
ts.arc_start = -70
# ts.allow_face_overlap = True
# ts.show_branch_length = True
ts.draw_guiding_lines = False
ts.optimal_scale_level = "mid"
ts.extra_branch_line_color = "red"
ts.root_opening_factor = 0.50
ts.show_border = True
ts.scale = None
t = Tree()
t.populate(200, random_branches=True, branch_range=(0, 0))
t.dist = 0.0
dists = [n.dist for n in t.traverse() if n.dist != 0]
# print max(dists), min(dists)
t.write(outfile="test.nw")
# for s in [5, None]:
# ts.scale = s
# t.render("img_scale_%s.png" %s, tree_style = ts, w=600)
t.show(tree_style=ts)