本文整理汇总了Python中cobra.Model.compartments['a']方法的典型用法代码示例。如果您正苦于以下问题：Python Model.compartments['a']方法的具体用法？Python Model.compartments['a']怎么用？Python Model.compartments['a']使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类cobra.Model的用法示例。
在下文中一共展示了Model.compartments['a']方法的1个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: print
# 需要导入模块: from cobra import Model [as 别名]
# 或者: from cobra.Model import compartments['a'] [as 别名]
# import these things
from cobra import Model, Reaction, Metabolite, Gene
import cobra.test
import os
import copy
from os.path import join
# create new model from sbml file
print("importing the existing the ecoli model...")
eco = cobra.io.sbml.create_cobra_model_from_sbml_file("/home/protoxpire0/Documents/igem/Gol_FBA/msb201165-s3.xml",old_sbml=False,legacy_metabolite=False,print_time=False,use_hyphens=False)
print("Creating new_model...")
new_model = Model('new_model')
print("Adding compartment 'a' for 'all'...")
new_model.compartments['a'] = 'all'
#Adding all metabolites from existing model removing duplications
print("Adding all metabolites from existing model removing duplications...")
for x in eco.metabolites:
dup = False
for y in new_model.metabolites:
if x.id[:-2] == y.id:
dup = True
break
if dup == False:
met = copy.deepcopy(x)
met.id = met.id[:-2]+'_a'
met.compartment = 'a'
new_model.add_metabolites({met})