本文整理汇总了Python中biggles.FramedPlot.ylog方法的典型用法代码示例。如果您正苦于以下问题:Python FramedPlot.ylog方法的具体用法?Python FramedPlot.ylog怎么用?Python FramedPlot.ylog使用的例子?那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类biggles.FramedPlot
的用法示例。
在下文中一共展示了FramedPlot.ylog方法的15个代码示例,这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞,您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: plot_T
# 需要导入模块: from biggles import FramedPlot [as 别名]
# 或者: from biggles.FramedPlot import ylog [as 别名]
def plot_T(self, k, T, Tc=None, Tb=None):
from biggles import FramedPlot, Curve, PlotKey
plt=FramedPlot()
c=Curve(k, T**2)
c.label = '$T^2$'
plt.add(c)
plist = [c]
if Tc is not None:
cc=Curve(k,Tc**2,color='blue')
cc.label = '$Tc^2$'
plt.add(cc)
plist.append(cc)
if Tb is not None:
tmp = where(Tb < 1.e-5, 1.e-5, Tb)
cb=Curve(k,tmp**2,color='red')
cb.label = '$Tb^2$'
plt.add(cb)
plist.append(cb)
plt.xlog=True
plt.ylog=True
plt.ylabel = '$T^2'
plt.xlabel = 'k'
plt.yrange = [1.e-8,1.0]
plt.aspect_ratio=1
if Tc is not None or Tb is not None:
key=PlotKey(0.1,0.9,plist)
plt.add(key)
plt.show()
示例2: test_fit_nfw_dsig
# 需要导入模块: from biggles import FramedPlot [as 别名]
# 或者: from biggles.FramedPlot import ylog [as 别名]
def test_fit_nfw_dsig(rmin=0.01):
from biggles import FramedPlot,Points,SymmetricErrorBarsY,Curve
omega_m=0.25
z=0.25
n = lensing.nfw.NFW(omega_m, z)
r200 = 1.0
c = 5.0
rmax = 5.0
log_rmin = log10(rmin)
log_rmax = log10(rmax)
npts = 25
logr = numpy.linspace(log_rmin,log_rmax,npts)
r = 10.0**logr
ds = n.dsig(r, r200, c)
# 10% errors
dserr = 0.1*ds
ds += dserr*numpy.random.standard_normal(ds.size)
guess = numpy.array([r200,c],dtype='f8')
# add 10% error to the guess
guess += 0.1*guess*numpy.random.standard_normal(guess.size)
res = fit_nfw_dsig(omega_m, z, r, ds, dserr, guess)
r200_fit = res['r200']
r200_err = res['r200_err']
c_fit = res['c']
c_err = res['c_err']
print 'Truth:'
print ' r200: %f' % r200
print ' c: %f' % c
print 'r200_fit: %f +/- %f' % (r200_fit,r200_err)
print ' c_fit: %f +/- %f' % (c_fit,c_err)
print 'Cov:'
print res['cov']
logr = numpy.linspace(log_rmin,log_rmax,1000)
rlots = 10.0**logr
yfit = n.dsig(rlots,r200_fit,c_fit)
plt=FramedPlot()
plt.add(Points(r,ds,type='filled circle'))
plt.add(SymmetricErrorBarsY(r,ds,dserr))
plt.add(Curve(rlots,yfit,color='blue'))
plt.xlabel = r'$r$ [$h^{-1}$ Mpc]'
plt.ylabel = r'$\Delta\Sigma ~ [M_{sun} pc^{-2}]$'
plt.xrange = [0.5*rmin, 1.5*rmax]
plt.yrange = [0.5*(ds-dserr).min(), 1.5*(ds+dserr).max()]
plt.xlog=True
plt.ylog=True
plt.show()
示例3: plot_nfwfits_byrun
# 需要导入模块: from biggles import FramedPlot [as 别名]
# 或者: from biggles.FramedPlot import ylog [as 别名]
def plot_nfwfits_byrun(run, name, prompt=False):
conf = lensing.files.read_config(run)
d = lensing.sample_read(type='fit', sample=run, name=name)
omega_m = conf['omega_m']
rvals = numpy.linspace(d['r'].min(), d['r'].max(),1000)
for i in xrange(d.size):
plt = FramedPlot()
lensing.plotting.add_to_log_plot(plt,
d['r'][i],
d['dsig'][i],
d['dsigerr'][i])
z = d['z_mean'][i]
n = lensing.nfw.NFW(omega_m, z)
yfit = n.dsig(rvals, d['r200_fit'][i],d['c_fit'][i])
plt.add(Curve(rvals,yfit,color='blue'))
plt.xlog=True
plt.ylog=True
plt.xlabel = r'$r$ [$h^{-1}$ Mpc]'
plt.ylabel = r'$\Delta\Sigma ~ [M_{sun} pc^{-2}]$'
if prompt:
plt.show()
raw_input('hit a key: ')
else:
epsfile='/home/esheldon/tmp/plots/desmocks-nfwfit-%02i.eps' % i
print 'Writing epsfile:',epsfile
plt.write_eps(epsfile)
示例4: plot_sub_pixel
# 需要导入模块: from biggles import FramedPlot [as 别名]
# 或者: from biggles.FramedPlot import ylog [as 别名]
def plot_sub_pixel(ellip,theta, show=False):
import biggles
from biggles import PlotLabel,FramedPlot,Table,Curve,PlotKey,Points
from pcolors import rainbow
f=subpixel_file(ellip,theta,'fits')
data = eu.io.read(f)
colors = rainbow(data.size,'hex')
pltSigma = FramedPlot()
pltSigma.ylog=1
pltSigma.xlog=1
curves=[]
for j in xrange(data.size):
sigest2 = (data['Irr'][j,:] + data['Icc'][j,:])/2
pdiff = sigest2/data['sigma'][j]**2 -1
nsub=numpy.array(data['nsub'][j,:])
#pc = biggles.Curve(nsub, pdiff, color=colors[j])
pp = Points(data['nsub'][j,:], pdiff, type='filled circle',color=colors[j])
pp.label = r'$\sigma: %0.2f$' % data['sigma'][j]
curves.append(pp)
pltSigma.add(pp)
#pltSigma.add(pc)
#pltSigma.yrange=[0.8,1.8]
#pltSigma.add(pp)
c5 = Curve(linspace(1,8, 20), .005+zeros(20))
pltSigma.add(c5)
key=PlotKey(0.95,0.95,curves,halign='right',fontsize=1.7)
key.key_vsep=1
pltSigma.add(key)
pltSigma.xlabel='N_{sub}'
pltSigma.ylabel=r'$\sigma_{est}^2 /\sigma_{True}^2 - 1$'
lab=PlotLabel(0.05,0.07,r'$\epsilon: %0.2f \theta: %0.2f$' % (ellip,theta),halign='left')
pltSigma.add(lab)
pltSigma.yrange = [1.e-5,0.1]
pltSigma.xrange = [0.8,20]
if show:
pltSigma.show()
epsfile=subpixel_file(ellip,theta,'eps')
print("Writing eps file:",epsfile)
pltSigma.write_eps(epsfile)
示例5: plot_pk
# 需要导入模块: from biggles import FramedPlot [as 别名]
# 或者: from biggles.FramedPlot import ylog [as 别名]
def plot_pk(self,k,pk):
from biggles import FramedPlot, Curve
plt=FramedPlot()
plt.add(Curve(k,pk))
plt.xlog=True
plt.ylog=True
plt.xlabel = r'$k [h/Mpc]$'
plt.ylabel = r'$P_{lin}(k)$'
plt.aspect_ratio = 1
plt.show()
示例6: plot_m
# 需要导入模块: from biggles import FramedPlot [as 别名]
# 或者: from biggles.FramedPlot import ylog [as 别名]
def plot_m(self, r200, c):
from biggles import FramedPlot, Curve
n=1000
r = numpy.linspace(0.01, 20.0,n)
m = self.m(r, r200, c)
plt=FramedPlot()
plt.add( Curve(r,m) )
plt.xlog=True
plt.ylog=True
plt.show()
示例7: plot_dsig_one
# 需要导入模块: from biggles import FramedPlot [as 别名]
# 或者: from biggles.FramedPlot import ylog [as 别名]
def plot_dsig_one(r, dsig, dsigerr, **kw):
"""
plot delta sigma
useful if adding to an existing plot
parameters
----------
r: array
radius
dsig: array
delta sigma
dsigerr: array
error on delta sigma
"""
from biggles import FramedPlot
nbin=1
_set_biggles_defs(nbin)
visible=kw.get('visible',True)
xlog=kw.get('xlog',True)
ylog=kw.get('ylog',True)
aspect_ratio=kw.get('aspect_ratio',1)
is_ortho=kw.get('is_ortho',False)
plt=kw.get('plt',None)
if plt is None:
plt=FramedPlot()
plt.aspect_ratio=aspect_ratio
plt.xlog=xlog
plt.ylog=ylog
plt.xlabel = LABELS['rproj']
if is_ortho:
plt.ylabel = LABELS['osig']
else:
plt.ylabel = LABELS['dsig']
xrng, yrng = _add_dsig_to_plot(plt, r, dsig, dsigerr, **kw)
plt.xrange=xrng
plt.yrange=yrng
if visible:
plt.show()
return plt
示例8: plot_xi
# 需要导入模块: from biggles import FramedPlot [as 别名]
# 或者: from biggles.FramedPlot import ylog [as 别名]
def plot_xi(self, r, xi):
from biggles import FramedPlot, Curve
minval = 1.e-4
xi = where(xi < minval, minval, xi)
plt=FramedPlot()
plt.add(Curve(r,xi))
plt.xlog=True
plt.ylog=True
plt.xlabel = r'$r [Mpc/h]$'
plt.ylabel = r'$\xi_{lin}(r)$'
plt.aspect_ratio=1
plt.show()
示例9: test_xi_converge_nplk
# 需要导入模块: from biggles import FramedPlot [as 别名]
# 或者: from biggles.FramedPlot import ylog [as 别名]
def test_xi_converge_nplk(epsfile=None):
"""
Test how xi converges with the number of k points per log10(k)
Note we should test other convergence factors too!
"""
tab=Table(2,1)
pltbig = FramedPlot()
pltzoom = FramedPlot()
pltbig.xlabel='r'
pltbig.ylabel='xi(r)'
pltbig.xlog=True
pltbig.ylog=True
pltzoom.xlabel='r'
pltzoom.ylabel='xi(r)'
l=Linear()
r=10.0**linspace(0.0,2.3,1000)
nplk_vals = [20,60,100,140,160]
color_vals = ['blue','skyblue','green','orange','magenta','red']
plist=[]
lw=2.4
for nplk,color in zip(nplk_vals,color_vals):
print 'nplk:',nplk
xi = l.xi(r, nplk=nplk)
limxi = where(xi < 1.e-5, 1.e-5, xi)
climxi = Curve(r,limxi,color=color,linewidth=lw)
climxi.label = 'nplk: %i' % nplk
pltbig.add(climxi)
plist.append(climxi)
w=where1(r > 50.0)
cxi = Curve(r[w], xi[w], color=color, linewidth=lw)
pltzoom.add(cxi)
key = PlotKey(0.7,0.8, plist)
pltzoom.add(key)
tab[0,0] = pltbig
tab[1,0] = pltzoom
if epsfile is not None:
tab.write_eps(epsfile)
else:
tab.show()
示例10: plot_drho
# 需要导入模块: from biggles import FramedPlot [as 别名]
# 或者: from biggles.FramedPlot import ylog [as 别名]
def plot_drho(comb=None, r=None, drho=None, drhoerr=None,
color='black',type='filled circle',
nolabel=False, noshow=False, minval=1.e-5,
aspect_ratio=1):
"""
This one stands alone.
"""
if comb is not None:
r=comb['rdrho']
drho=comb['drho']
drhoerr=comb['drhoerr']
else:
if r is None or drho is None or drhoerr is None:
raise ValueError("Send a combined struct or r,drho,drhoerr")
plt=FramedPlot()
plt.aspect_ratio=aspect_ratio
plt.xlog=True
plt.ylog=True
if not nolabel:
plt.xlabel = r'$r$ [$h^{-1}$ Mpc]'
plt.ylabel = r'$\delta\rho ~ [M_{\odot} pc^{-3}]$'
od=add_to_log_plot(plt, r, drho, drhoerr,
color=color,
type=type,
minval=minval)
# for drho we need even broader yrange
plt.xrange = od['xrange']
yr=od['yrange']
plt.yrange = [0.5*yr[0], 3*yr[1]]
if not noshow:
plt.show()
od['plt'] = plt
return od
示例11: plot_mass
# 需要导入模块: from biggles import FramedPlot [as 别名]
# 或者: from biggles.FramedPlot import ylog [as 别名]
def plot_mass(comb=None, r=None, mass=None, masserr=None,
color='black',type='filled circle',
nolabel=False, noshow=False, minval=1.e11,
aspect_ratio=1):
if comb is not None:
r=comb['rmass']
mass=comb['mass']
masserr=comb['masserr']
else:
if r is None or mass is None or masserr is None:
raise ValueError("Send a combined struct or r,mass,masserr")
plt=FramedPlot()
plt.aspect_ratio=aspect_ratio
plt.xlog=True
plt.ylog=True
if not nolabel:
plt.xlabel = r'$r$ [$h^{-1}$ Mpc]'
plt.ylabel = r'$M(<r) ~ [h^{-1} M_{\odot}]$'
od=add_to_log_plot(plt, r, mass, masserr,
color=color,
type=type,
minval=minval)
plt.xrange = od['xrange']
plt.yrange = od['yrange']
if not noshow:
plt.show()
od['plt'] = plt
return od
示例12: plot_dsig
# 需要导入模块: from biggles import FramedPlot [as 别名]
# 或者: from biggles.FramedPlot import ylog [as 别名]
def plot_dsig(**keys):
"""
This one stands alone.
"""
comb=keys.get('comb',None)
r=keys.get('r',None)
dsig=keys.get('dsig',None)
dsigerr=keys.get('dsigerr',None)
color=keys.get('color','black')
type=keys.get('type','filled circle')
nolabel=keys.get('nolabel',False)
show=keys.get('show',True)
minval=keys.get('minval',1.e-3)
xlog=keys.get('xlog',True)
ylog=keys.get('ylog',True)
aspect_ratio=keys.get('aspect_ratio',1)
plt=keys.get('plt',None)
label=keys.get('label',None)
if comb is not None:
r=comb['r']
dsig=comb['dsig']
dsigerr=comb['dsigerr']
else:
if r is None or dsig is None or dsigerr is None:
raise ValueError("Send a combined struct or r,dsig,dsigerr")
if plt is None:
plt=FramedPlot()
plt.aspect_ratio=aspect_ratio
plt.xlog=xlog
plt.ylog=ylog
if not nolabel:
plt.xlabel = labels['rproj']
plt.ylabel = labels['dsig']
if ylog:
od=add_to_log_plot(plt, r, dsig, dsigerr,
color=color,
type=type,
minval=minval)
plt.xrange = od['xrange']
plt.yrange = od['yrange']
if label:
od['p'].label=label
else:
zpts=Curve(r, dsig*0)
plt.add(zpts)
pts=Points(r, dsig, type=type, color=color)
if label:
pts.label=label
plt.add(pts)
if dsigerr is not None:
epts=SymErrY(r, dsig, dsigerr, color=color)
plt.add(epts)
yrng=keys.get('yrange',None)
xrng=keys.get('xrange',None)
if yrng:
plt.yrange=yrng
if xrng:
plt.xrange=xrng
else:
if xlog:
plt.xrange=eu.plotting.get_log_plot_range(r)
if show:
plt.show()
if ylog:
od['plt'] = plt
return od
else:
return plt
示例13: plot2dsig_over
# 需要导入模块: from biggles import FramedPlot [as 别名]
# 或者: from biggles.FramedPlot import ylog [as 别名]
def plot2dsig_over(r1,dsig1,dsig1err,r2,dsig2, dsig2err, **keys):
ptype1=keys.get('ptype1','filled circle')
ptype2=keys.get('ptype2','filled circle')
size1=keys.get('size1',1)
size2=keys.get('size2',1)
color1=keys.get('color1','red')
color2=keys.get('color2','blue')
label = keys.get('label',None)
label1 = keys.get('label1',None)
label2 = keys.get('label2',None)
xrng = keys.get('xrange',None)
yrng = keys.get('yrange',None)
show = keys.get('show',True)
ylog = keys.get('ylog',True)
plt=keys.get('plt',None)
yall=numpy.concatenate((dsig1, dsig2))
yerrall=numpy.concatenate((dsig1err, dsig2err))
if yrng is None:
if ylog:
yrng = eu.plotting.get_log_plot_range(yall, err=yerrall,
input_range=yrng)
rr=numpy.concatenate((r1,r2))
if xrng is None:
xrng = eu.plotting.get_log_plot_range(rr)
if plt is None:
plt=FramedPlot()
plt.xlog=True
plt.ylog=ylog
plt.xrange=xrng
plt.yrange=yrng
plt.xlabel = labels['rproj']
plt.ylabel = labels['dsig']
dsig1_p = Points(r1, dsig1, color=color1, type=ptype1, size=size1)
dsig1err_p = SymErrY(r1, dsig1, dsig1err, color=color2)
dsig1_p.label=label1
dsig2_p = Points(r2, dsig2, color=color2, type=ptype2, size=size2)
dsig2err_p = SymErrY(r2, dsig2, dsig2err, color=color2)
dsig2_p.label=label2
plt.add(dsig1_p, dsig2_p)
if ylog:
# biggles chokes if you give it negative data for a log plot
eu.plotting.add_log_error_bars(plt,'y',r1,dsig1,dsig1err,yrng,
color=color1)
eu.plotting.add_log_error_bars(plt,'y',r2,dsig2,dsig2err,yrng,
color=color2)
else:
err1 = biggles.SymmetricErrorBarsY(r1,dsig1,dsig1err,color=color1)
err2 = biggles.SymmetricErrorBarsY(r2,dsig2,dsig2err,color=color2)
plt.add(err1,err2)
zerop = biggles.Curve(xrng, [0,0])
plt.add(zerop)
if label is not None:
plt.add(PlotLabel(0.9,0.9,label,halign='right'))
if label1 is not None or label2 is not None:
key = PlotKey(0.9,0.15, [dsig1_p,dsig2_p], halign='right')
plt.add(key)
if show:
plt.show()
return plt
示例14: compare_idl
# 需要导入模块: from biggles import FramedPlot [as 别名]
# 或者: from biggles.FramedPlot import ylog [as 别名]
def compare_idl(ratios=False, epsfile=None):
from biggles import FramedPlot,Points, Table
omega_m=0.25
omega_b=0.055
sigma_8=1.0
h=1.0
ns=0.98
r=eu.recfile.Open('/home/esheldon/tmp/linear-compare/pkidl.dat',
delim=' ',dtype=[('k','f8'),('pk','f8')])
pkidlst = r.read()
r.close()
k,pkidl = pkidlst['k'],pkidlst['pk']
r=eu.recfile.Open('/home/esheldon/tmp/linear-compare/xiidl.dat',
delim=' ',dtype=[('r','f8'),('xi','f8')])
xiidlst = r.read()
r.close()
r,xiidl = xiidlst['r'],xiidlst['xi']
l = Linear(omega_m=omega_m,omega_b=omega_b,sigma_8=sigma_8,h=h,ns=ns)
pk = l.pk(k)
xi = l.xi(r, nplk=1000)
#xi = l.xi(r)
pkrat = pk/pkidl
xirat = xi/xiidl
tab=Table(2,1)
symsize=1
if ratios:
pkplt = FramedPlot()
pkplt.xlabel='k'
pkplt.xlog=True
pkplt.ylabel='P(k)/P(k) dave'
pkplt.add( Points(k,pkrat,type='filled circle',size=symsize) )
pkplt.add( Curve(k,pkrat,color='blue') )
tab[0,0] = pkplt
if ratios:
xiplt = FramedPlot()
xiplt.xlabel='r'
xiplt.xlog=True
xiplt.ylabel='xi(r)/xi(r) dave'
xiplt.add( Points(r,xirat,type='filled circle',size=symsize) )
xiplt.add( Curve(r,xirat,color='blue') )
tab[1,0] = xiplt
else:
# big log-log plot
limxi = where(xi < 1.e-5, 1.e-5, xi)
#pxi = Points(r,limxi,type='filled circle',size=symsize)
cxi = Curve(r,limxi,color='blue')
limxiidl = where(xiidl < 1.e-5, 1.e-5, xiidl)
#pxiidl = Points(r,limxiidl,type='filled circle',size=symsize)
cxiidl = Curve(r,limxiidl,color='red')
xipltall = FramedPlot()
xipltall.xlabel='r'
xipltall.xlog=True
xipltall.ylog=True
xipltall.ylabel='xi(r)'
#xipltall.add(pxi,cxi,pxiidl,cxiidl)
xipltall.add(cxi,cxiidl)
tab[0,0] = xipltall
# zoomed in plot
xiplt = FramedPlot()
xiplt.xlabel='r'
xiplt.xlog=True
xiplt.ylabel='xi(r)'
pxi = Points(r,xi,type='filled circle',size=symsize)
cxi = Curve(r,xi,color='blue')
cxi.label = 'Mine'
pxiidl = Points(r,xiidl,type='filled circle',size=symsize)
cxiidl = Curve(r,xiidl,color='red')
cxiidl.label = 'Dave'
key=PlotKey(0.8,0.9, [cxi,cxiidl])
xiplt.add(pxi,cxi,pxiidl,cxiidl)
xiplt.xrange = [50.0,r.max()]
xiplt.yrange=[-2.e-3,1.e-2]
xiplt.add(key)
#.........这里部分代码省略.........
示例15: test_fit_nfw_lin_dsig
# 需要导入模块: from biggles import FramedPlot [as 别名]
# 或者: from biggles.FramedPlot import ylog [as 别名]
def test_fit_nfw_lin_dsig(rmin=0.01):
from biggles import FramedPlot,Points,SymmetricErrorBarsY,Curve,PlotKey
omega_m=0.25
z=0.25
r200 = 1.0
c = 5.0
B=10.0
rmax = 50.0
log_rmin = log10(rmin)
log_rmax = log10(rmax)
npts = 30
r = 10.0**linspace(log_rmin,log_rmax,npts)
fitter = NFWBiasFitter(omega_m,z,r)
ds = fitter.dsig(r, r200, c, B)
# 10% errors
dserr = 0.1*ds
ds += dserr*numpy.random.standard_normal(ds.size)
guess = numpy.array([r200,c,B],dtype='f8')
# add 10% error to the guess
guess += 0.1*guess*numpy.random.standard_normal(guess.size)
res = fitter.fit(ds,dserr,guess, more=True)
r200_fit=res['r200']
r200_err = res['r200_err']
c_fit=res['c']
c_err = res['c_err']
B_fit=res['B']
B_err = res['B_err']
print 'Truth:'
print ' r200: %f' % r200
print ' c: %f' % c
print ' B: %f' % B
print 'r200_fit: %f +/- %f' % (r200_fit,r200_err)
print ' c_fit: %f +/- %f' % (c_fit,c_err)
print ' B_fit: %f +/- %f' % (B_fit,B_err)
print 'Cov:'
print res['cov']
rfine = 10.0**linspace(log_rmin,log_rmax,100)
fitter2 = NFWBiasFitter(omega_m,z,rfine)
yfit = fitter2.dsig(rfine, r200_fit, c_fit, B_fit)
yfit_nfw = fitter2.nfw.dsig(rfine, r200_fit, c_fit)
yfit_lin = fitter2.lin_dsig(rfine,B_fit)
plt=FramedPlot()
plt.add(Points(r,ds,type='filled circle'))
plt.add(SymmetricErrorBarsY(r,ds,dserr))
cyfit = Curve(rfine,yfit,color='blue')
cyfit_nfw = Curve(rfine,yfit_nfw,color='red')
cyfit_lin = Curve(rfine,yfit_lin,color='orange')
cyfit.label = 'Best Fit'
cyfit_nfw.label = 'NFW'
cyfit_lin.label = 'linear'
key=PlotKey(0.1,0.3,[cyfit,cyfit_nfw,cyfit_lin])
plt.add(cyfit,cyfit_nfw,cyfit_lin,key)
plt.xlabel = r'$r$ [$h^{-1}$ Mpc]'
plt.ylabel = r'$\Delta\Sigma ~ [M_{sun} pc^{-2}]$'
plt.xrange = [0.5*rmin, 1.5*rmax]
plt.yrange = [0.5*(ds-dserr).min(), 1.5*(ds+dserr).max()]
plt.xlog=True
plt.ylog=True
plt.show()