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示例1: normalize
# 需要导入模块: from bayesNet import Factor [as 别名]
# 或者: from bayesNet.Factor import getAllPossibleAssignmentDicts [as 别名]
def normalize(factor):
"""
Question 5: Your normalize implementation
Input factor is a single factor.
The set of conditioned variables for the normalized factor consists
of the input factor's conditioned variables as well as any of the
input factor's unconditioned variables with exactly one entry in their
domain. Since there is only one entry in that variable's domain, we
can either assume it was assigned as evidence to have only one variable
in its domain, or it only had one entry in its domain to begin with.
This blurs the distinction between evidence assignments and variables
with single value domains, but that is alright since we have to assign
variables that only have one value in their domain to that single value.
Return a new factor where the sum of the all the probabilities in the table is 1.
This should be a new factor, not a modification of this factor in place.
If the sum of probabilities in the input factor is 0,
you should return None.
This is intended to be used at the end of a probabilistic inference query.
Because of this, all variables that have more than one element in their
domain are assumed to be unconditioned.
There are more general implementations of normalize, but we will only
implement this version.
Useful functions:
Factor.getAllPossibleAssignmentDicts
Factor.getProbability
Factor.setProbability
Factor.unconditionedVariables
Factor.conditionedVariables
Factor.variableDomainsDict
"""
# typecheck portion
variableDomainsDict = factor.variableDomainsDict()
for conditionedVariable in factor.conditionedVariables():
if len(variableDomainsDict[conditionedVariable]) > 1:
print "Factor failed normalize typecheck: ", factor
raise ValueError, ("The factor to be normalized must have only one " + \
"assignment of the \n" + "conditional variables, " + \
"so that total probability will sum to 1\n" +
str(factor))
unconditioned_variables = set(filter(lambda var: len(factor.variableDomainsDict()[var]) != 1, factor.unconditionedVariables()))
conditioned_variables = set(factor.conditionedVariables()).union(filter(lambda var: len(factor.variableDomainsDict()[var]) == 1,
factor.unconditionedVariables()))
normalized = Factor(unconditioned_variables, conditioned_variables, factor.variableDomainsDict())
total_prob = sum([factor.getProbability(ass) for ass in factor.getAllPossibleAssignmentDicts()])
for ass in normalized.getAllPossibleAssignmentDicts():
normalized.setProbability(ass, factor.getProbability(ass) / total_prob)
return normalized
示例2: eliminate
# 需要导入模块: from bayesNet import Factor [as 别名]
# 或者: from bayesNet.Factor import getAllPossibleAssignmentDicts [as 别名]
def eliminate(factor, eliminationVariable):
"""
Question 2: Your eliminate implementation
Input factor is a single factor.
Input eliminationVariable is the variable to eliminate from factor.
eliminationVariable must be an unconditioned variable in factor.
You should calculate the set of unconditioned variables and conditioned
variables for the factor obtained by eliminating the variable
eliminationVariable.
Return a new factor where all of the rows mentioning
eliminationVariable are summed with rows that match
assignments on the other variables.
Useful functions:
Factor.getAllPossibleAssignmentDicts
Factor.getProbability
Factor.setProbability
Factor.unconditionedVariables
Factor.conditionedVariables
Factor.variableDomainsDict
"""
# autograder tracking -- don't remove
if not (callTrackingList is None):
callTrackingList.append(('eliminate', eliminationVariable))
# typecheck portion
if eliminationVariable not in factor.unconditionedVariables():
print "Factor failed eliminate typecheck: ", factor
raise ValueError, ("Elimination variable is not an unconditioned variable " \
+ "in this factor\n" +
"eliminationVariable: " + str(eliminationVariable) + \
"\nunconditionedVariables:" + str(factor.unconditionedVariables()))
if len(factor.unconditionedVariables()) == 1:
print "Factor failed eliminate typecheck: ", factor
raise ValueError, ("Factor has only one unconditioned variable, so you " \
+ "can't eliminate \nthat variable.\n" + \
"eliminationVariable:" + str(eliminationVariable) + "\n" +\
"unconditionedVariables: " + str(factor.unconditionedVariables()))
"*** YOUR CODE HERE ***"
variableDomains = factor.variableDomainsDict()
conditionedVariables = factor.conditionedVariables()
unconditionedVariables = factor.unconditionedVariables()
if eliminationVariable in conditionedVariables:
conditionedVariables.remove(eliminationVariable)
if eliminationVariable in unconditionedVariables:
unconditionedVariables.remove(eliminationVariable)
del variableDomains[eliminationVariable]
newFactor = Factor(unconditionedVariables, conditionedVariables, variableDomains)
newAssignments = newFactor.getAllPossibleAssignmentDicts()
assignments = factor.getAllPossibleAssignmentDicts()
for newAssignment in newAssignments:
runningProbability = 0
for assignment in assignments:
if isSubset(assignment, newAssignment):
runningProbability += factor.getProbability(assignment)
newFactor.setProbability(newAssignment, runningProbability)
return newFactor
示例3: eliminate
# 需要导入模块: from bayesNet import Factor [as 别名]
# 或者: from bayesNet.Factor import getAllPossibleAssignmentDicts [as 别名]
def eliminate(factor, eliminationVariable):
"""
Question 4: Your eliminate implementation
Input factor is a single factor.
Input eliminationVariable is the variable to eliminate from factor.
eliminationVariable must be an unconditioned variable in factor.
You should calculate the set of unconditioned variables and conditioned
variables for the factor obtained by eliminating the variable
eliminationVariable.
Return a new factor where all of the rows mentioning
eliminationVariable are summed with rows that match
assignments on the other variables.
Useful functions:
Factor.getAllPossibleAssignmentDicts
Factor.getProbability
Factor.setProbability
Factor.unconditionedVariables
Factor.conditionedVariables
Factor.variableDomainsDict
"""
# autograder tracking -- don't remove
if not (callTrackingList is None):
callTrackingList.append(('eliminate', eliminationVariable))
# typecheck portion
if eliminationVariable not in factor.unconditionedVariables():
print "Factor failed eliminate typecheck: ", factor
raise ValueError, ("Elimination variable is not an unconditioned variable " \
+ "in this factor\n" +
"eliminationVariable: " + str(eliminationVariable) + \
"\nunconditionedVariables:" + str(factor.unconditionedVariables()))
if len(factor.unconditionedVariables()) == 1:
print "Factor failed eliminate typecheck: ", factor
raise ValueError, ("Factor has only one unconditioned variable, so you " \
+ "can't eliminate \nthat variable.\n" + \
"eliminationVariable:" + str(eliminationVariable) + "\n" +\
"unconditionedVariables: " + str(factor.unconditionedVariables()))
"*** YOUR CODE HERE ***"
# Note: "reduced" indicates its the unconditioned variables minus the elimVar, and "full" means its all the starting unconditioned variables
reducedUnconditionedVariables = factor.unconditionedVariables()
reducedUnconditionedVariables.remove(eliminationVariable)
reducedFactor = Factor(reducedUnconditionedVariables, factor.conditionedVariables(), factor.variableDomainsDict())
for reducedAssignment in reducedFactor.getAllPossibleAssignmentDicts():
prob = 0
for elimVarVal in factor.variableDomainsDict()[eliminationVariable]:
fullAssignment = reducedAssignment
fullAssignment[eliminationVariable] = elimVarVal
prob = prob + factor.getProbability(fullAssignment)
reducedFactor.setProbability(reducedAssignment, prob)
return reducedFactor
示例4: normalize
# 需要导入模块: from bayesNet import Factor [as 别名]
# 或者: from bayesNet.Factor import getAllPossibleAssignmentDicts [as 别名]
def normalize(factor):
"""
Question 3: Your normalize implementation
Input factor is a single factor.
The set of conditioned variables for the normalized factor consists
of the input factor's conditioned variables as well as any of the
input factor's unconditioned variables with exactly one entry in their
domain. Since there is only one entry in that variable's domain, we
can either assume it was assigned as evidence to have only one variable
in its domain, or it only had one entry in its domain to begin with.
This blurs the distinction between evidence assignments and variables
with single value domains, but that is alright since we have to assign
variables that only have one value in their domain to that single value.
Return a new factor where the sum of the all the probabilities in the table is 1.
This should be a new factor, not a modification of this factor in place.
If the sum of probabilities in the input factor is 0,
you should return None.
This is intended to be used at the end of a probabilistic inference query.
Because of this, all variables that have more than one element in their
domain are assumed to be unconditioned.
There are more general implementations of normalize, but we will only
implement this version.
Useful functions:
Factor.getAllPossibleAssignmentDicts
Factor.getProbability
Factor.setProbability
Factor.unconditionedVariables
Factor.conditionedVariables
Factor.variableDomainsDict
"""
# typecheck portion
variableDomainsDict = factor.variableDomainsDict()
for conditionedVariable in factor.conditionedVariables():
if len(variableDomainsDict[conditionedVariable]) > 1:
print "Factor failed normalize typecheck: ", factor
raise ValueError, (
"The factor to be normalized must have only one "
+ "assignment of the \n"
+ "conditional variables, "
+ "so that total probability will sum to 1\n"
+ str(factor)
)
"*** YOUR CODE HERE ***"
conditionedVariables = []
for each in factor.unconditionedVariables():
if len(factor.variableDomainsDict()[each]) == 1:
conditionedVariables.append(each)
conditionedVariables = list(set(conditionedVariables + list(factor.conditionedVariables())))
unconditionedVariables = []
for each in factor.unconditionedVariables():
if each not in conditionedVariables:
unconditionedVariables.append(each)
newFactor = Factor(unconditionedVariables, conditionedVariables, factor.variableDomainsDict())
z = 0
for each in factor.getAllPossibleAssignmentDicts():
z += factor.getProbability(each)
for each in newFactor.getAllPossibleAssignmentDicts():
newFactor.setProbability(each, factor.getProbability(each) / z)
return newFactor
util.raiseNotDefined()
示例5: eliminate
# 需要导入模块: from bayesNet import Factor [as 别名]
# 或者: from bayesNet.Factor import getAllPossibleAssignmentDicts [as 别名]
def eliminate(factor, eliminationVariable):
"""
Question 4: Your eliminate implementation
Input factor is a single factor.
Input eliminationVariable is the variable to eliminate from factor.
eliminationVariable must be an unconditioned variable in factor.
You should calculate the set of unconditioned variables and conditioned
variables for the factor obtained by eliminating the variable
eliminationVariable.
Return a new factor where all of the rows mentioning
eliminationVariable are summed with rows that match
assignments on the other variables.
Useful functions:
Factor.getAllPossibleAssignmentDicts
Factor.getProbability
Factor.setProbability
Factor.unconditionedVariables
Factor.conditionedVariables
Factor.variableDomainsDict
"""
# autograder tracking -- don't remove
if not (callTrackingList is None):
callTrackingList.append(('eliminate', eliminationVariable))
# typecheck portion
if eliminationVariable not in factor.unconditionedVariables():
print "Factor failed eliminate typecheck: ", factor
raise ValueError, ("Elimination variable is not an unconditioned variable " \
+ "in this factor\n" +
"eliminationVariable: " + str(eliminationVariable) + \
"\nunconditionedVariables:" + str(factor.unconditionedVariables()))
if len(factor.unconditionedVariables()) == 1:
print "Factor failed eliminate typecheck: ", factor
raise ValueError, ("Factor has only one unconditioned variable, so you " \
+ "can't eliminate \nthat variable.\n" + \
"eliminationVariable:" + str(eliminationVariable) + "\n" +\
"unconditionedVariables: " + str(factor.unconditionedVariables()))
"*** YOUR CODE HERE ***"
unCondVar = factor.unconditionedVariables()
unCondVar.remove(eliminationVariable)
condVar = factor.conditionedVariables()
varDomainsDict = factor.variableDomainsDict()
result = Factor(unCondVar, condVar, varDomainsDict)
for assignmentDict in result.getAllPossibleAssignmentDicts():
prob = 0
for eliminationValue in varDomainsDict[eliminationVariable]:
assignmentDictCopy = assignmentDict
assignmentDictCopy[eliminationVariable] = eliminationValue
prob += factor.getProbability(assignmentDictCopy)
result.setProbability(assignmentDict, prob)
return result
示例6: joinFactors
# 需要导入模块: from bayesNet import Factor [as 别名]
# 或者: from bayesNet.Factor import getAllPossibleAssignmentDicts [as 别名]
def joinFactors(factors):
"""
Question 3: Your join implementation
Input factors is a list of factors.
You should calculate the set of unconditioned variables and conditioned
variables for the join of those factors.
Return a new factor that has those variables and whose probability entries
are product of the corresponding rows of the input factors.
You may assume that the variableDomainsDict for all the input
factors are the same, since they come from the same BayesNet.
joinFactors will only allow unconditionedVariables to appear in
one input factor (so their join is well defined).
Hint: Factor methods that take an assignmentDict as input
(such as getProbability and setProbability) can handle
assignmentDicts that assign more variables than are in that factor.
Useful functions:
Factor.getAllPossibleAssignmentDicts
Factor.getProbability
Factor.setProbability
Factor.unconditionedVariables
Factor.conditionedVariables
Factor.variableDomainsDict
"""
# typecheck portion
setsOfUnconditioned = [set(factor.unconditionedVariables()) for factor in factors]
setsOfConditioned = [set(factor.conditionedVariables()) for factor in factors]
factors_domains = [factor.variableDomainsDict() for factor in factors]
if len(factors) > 1:
intersect = reduce(lambda x, y: x & y, setsOfUnconditioned)
if len(intersect) > 0:
print "Factor failed joinFactors typecheck: ", factor
raise ValueError, ("unconditionedVariables can only appear in one factor. \n"
+ "unconditionedVariables: " + str(intersect) +
"\nappear in more than one input factor.\n" +
"Input factors: \n" +
"\n".join(map(str, factors)))
else:
final_uncondition = reduce(lambda x, y: x | y, setsOfUnconditioned)
final_condition = reduce(lambda x, y: x | y, setsOfConditioned)-final_uncondition
final_domain = reduce(lambda x, y: dict(x.items()+y.items()), factors_domains)
new_factor = Factor(final_uncondition, final_condition,final_domain)
for assign_large in new_factor.getAllPossibleAssignmentDicts():
assign_large_prob = 1
for small_factor in factors:
# print(small_factor)
assign_large_prob *= small_factor.getProbability(get_new_assig(assign_large,small_factor))
new_factor.setProbability(assign_large,assign_large_prob)
return new_factor
else:
return factors[0]
示例7: joinFactors
# 需要导入模块: from bayesNet import Factor [as 别名]
# 或者: from bayesNet.Factor import getAllPossibleAssignmentDicts [as 别名]
def joinFactors(factors):
"""
Question 1: Your join implementation
Input factors is a list of factors.
You should calculate the set of unconditioned variables and conditioned
variables for the join of those factors.
Return a new factor that has those variables and whose probability entries
are product of the corresponding rows of the input factors.
You may assume that the variableDomainsDict for all the input
factors are the same, since they come from the same BayesNet.
joinFactors will only allow unconditionedVariables to appear in
one input factor (so their join is well defined).
Hint: Factor methods that take an assignmentDict as input
(such as getProbability and setProbability) can handle
assignmentDicts that assign more variables than are in that factor.
Useful functions:
Factor.getAllPossibleAssignmentDicts
Factor.getProbability
Factor.setProbability
Factor.unconditionedVariables
Factor.conditionedVariables
Factor.variableDomainsDict
"""
# typecheck portion
setsOfUnconditioned = [set(factor.unconditionedVariables()) for factor in factors]
if len(factors) > 1:
intersect = reduce(lambda x, y: x & y, setsOfUnconditioned)
if len(intersect) > 0:
print "Factor failed joinFactors typecheck: ", factor
raise ValueError, ("unconditionedVariables can only appear in one factor. \n"
+ "unconditionedVariables: " + str(intersect) +
"\nappear in more than one input factor.\n" +
"Input factors: \n" +
"\n".join(map(str, factors)))
"*** YOUR CODE HERE ***"
unconditionals, conditionals, variableDomainsDict = getVariablesFromAllFactors(factors)
newFactor = Factor(unconditionals, conditionals, variableDomainsDict)
for unconditional in unconditionals:
toRemove = []
newFactor = Factor(unconditionals, conditionals, variableDomainsDict)
possAssigns = newFactor.getAllPossibleAssignmentDicts()
newFactor = initiateProbsToOne(newFactor, possAssigns)
for factor in factors:
factorUnconditionals = factor.unconditionedVariables()
factorConditionals = factor.conditionedVariables()
if unconditional in factorUnconditionals and not unconditional in factorConditionals:
toRemove.append(factor)
assignments = factor.getAllPossibleAssignmentDicts()
for assignment in assignments:
for possAssign in possAssigns:
newFactor = adjustProbability(possAssign, assignment, newFactor, factor)
factors = purgeFactors(toRemove, factors, newFactor)
return newFactor
示例8: eliminate
# 需要导入模块: from bayesNet import Factor [as 别名]
# 或者: from bayesNet.Factor import getAllPossibleAssignmentDicts [as 别名]
def eliminate(factor, eliminationVariable):
"""
Question 2: Your eliminate implementation
Input factor is a single factor.
Input eliminationVariable is the variable to eliminate from factor.
eliminationVariable must be an unconditioned variable in factor.
You should calculate the set of unconditioned variables and conditioned
variables for the factor obtained by eliminating the variable
eliminationVariable.
Return a new factor where all of the rows mentioning
eliminationVariable are summed with rows that match
assignments on the other variables.
Useful functions:
Factor.getAllPossibleAssignmentDicts
Factor.getProbability
Factor.setProbability
Factor.unconditionedVariables
Factor.conditionedVariables
Factor.variableDomainsDict
"""
# autograder tracking -- don't remove
if not (callTrackingList is None):
callTrackingList.append(('eliminate', eliminationVariable))
# typecheck portion
if eliminationVariable not in factor.unconditionedVariables():
print "Factor failed eliminate typecheck: ", factor
raise ValueError, ("Elimination variable is not an unconditioned variable " \
+ "in this factor\n" +
"eliminationVariable: " + str(eliminationVariable) + \
"\nunconditionedVariables:" + str(factor.unconditionedVariables()))
if len(factor.unconditionedVariables()) == 1:
print "Factor failed eliminate typecheck: ", factor
raise ValueError, ("Factor has only one unconditioned variable, so you " \
+ "can't eliminate \nthat variable.\n" + \
"eliminationVariable:" + str(eliminationVariable) + "\n" +\
"unconditionedVariables: " + str(factor.unconditionedVariables()))
"*** YOUR CODE HERE ***"
#uncondVarSet = set()
condVarSet = factor.conditionedVariables()
uncondVarSet = factor.unconditionedVariables()
uncondVarSet.remove(eliminationVariable) #removes elimination variable
newFactor = Factor(uncondVarSet, condVarSet, factor.variableDomainsDict())
for assignment in newFactor.getAllPossibleAssignmentDicts():
probSum = 0
for val in factor.variableDomainsDict()[eliminationVariable]:
assignment[eliminationVariable] = val
probSum += factor.getProbability(assignment) #obtain probability of all assignments affiliated to entry add to other rows it matches with
newFactor.setProbability(assignment, probSum)
return newFactor
示例9: eliminate
# 需要导入模块: from bayesNet import Factor [as 别名]
# 或者: from bayesNet.Factor import getAllPossibleAssignmentDicts [as 别名]
def eliminate(factor, eliminationVariable):
"""
Question 2: Your eliminate implementation
Input factor is a single factor.
Input eliminationVariable is the variable to eliminate from factor.
eliminationVariable must be an unconditioned variable in factor.
You should calculate the set of unconditioned variables and conditioned
variables for the factor obtained by eliminating the variable
eliminationVariable.
Return a new factor where all of the rows mentioning
eliminationVariable are summed with rows that match
assignments on the other variables.
Useful functions:
Factor.getAllPossibleAssignmentDicts
Factor.getProbability
Factor.setProbability
Factor.unconditionedVariables
Factor.conditionedVariables
Factor.variableDomainsDict
"""
# autograder tracking -- don't remove
if not (callTrackingList is None):
callTrackingList.append(('eliminate', eliminationVariable))
# typecheck portion
if eliminationVariable not in factor.unconditionedVariables():
print "Factor failed eliminate typecheck: ", factor
raise ValueError, ("Elimination variable is not an unconditioned variable " \
+ "in this factor\n" +
"eliminationVariable: " + str(eliminationVariable) + \
"\nunconditionedVariables:" + str(factor.unconditionedVariables()))
if len(factor.unconditionedVariables()) == 1:
print "Factor failed eliminate typecheck: ", factor
raise ValueError, ("Factor has only one unconditioned variable, so you " \
+ "can't eliminate \nthat variable.\n" + \
"eliminationVariable:" + str(eliminationVariable) + "\n" +\
"unconditionedVariables: " + str(factor.unconditionedVariables()))
"*** YOUR CODE HERE ***"
new_unconditioned = factor.unconditionedVariables()
new_unconditioned.remove(eliminationVariable)
new_Factor = Factor(new_unconditioned,factor.conditionedVariables(), factor.variableDomainsDict())
for j in new_Factor.getAllPossibleAssignmentDicts():
probabilitySum = 0
for i in new_Factor.variableDomainsDict().get(eliminationVariable):
j[eliminationVariable] = i
currentProb = factor.getProbability(j)
probabilitySum += currentProb
del j[eliminationVariable]
new_Factor.setProbability(j, probabilitySum)
return new_Factor
示例10: joinTwoFactors
# 需要导入模块: from bayesNet import Factor [as 别名]
# 或者: from bayesNet.Factor import getAllPossibleAssignmentDicts [as 别名]
def joinTwoFactors(factor1,factor2):
conditionedVariables = set(factor1.conditionedVariables()) | set(factor2.conditionedVariables())
unconditionedVariables = set(factor1.unconditionedVariables()) | set(factor2.unconditionedVariables())
conditionedVariables = conditionedVariables - unconditionedVariables
newFactor = Factor(list(unconditionedVariables),list(conditionedVariables),factor1.variableDomainsDict())
for assignment in newFactor.getAllPossibleAssignmentDicts():
variables1 = set(factor1.unconditionedVariables()) | set(factor1.conditionedVariables())
assignment1 = {key:value for key,value in assignment.items() if key in variables1}
prob1 = factor1.getProbability(assignment1)
variables2 = set(factor2.unconditionedVariables()) | set(factor2.conditionedVariables())
assignment2 = {key:value for key,value in assignment.items() if key in variables2}
prob2 = factor2.getProbability(assignment2)
newFactor.setProbability(assignment,prob1*prob2)
return newFactor
示例11: joinFactors
# 需要导入模块: from bayesNet import Factor [as 别名]
# 或者: from bayesNet.Factor import getAllPossibleAssignmentDicts [as 别名]
def joinFactors(factors):
"""
Question 1: Your join implementation
Input factors is a list of factors.
You should calculate the set of unconditioned variables and conditioned
variables for the join of those factors.
Return a new factor that has those variables and whose probability entries
are product of the corresponding rows of the input factors.
You may assume that the variableDomainsDict for all the input
factors are the same, since they come from the same BayesNet.
joinFactors will only allow unconditionedVariables to appear in
one input factor (so their join is well defined).
Hint: Factor methods that take an assignmentDict as input
(such as getProbability and setProbability) can handle
assignmentDicts that assign more variables than are in that factor.
Useful functions:
Factor.getAllPossibleAssignmentDicts
[{'W': 'sun'}, {'W': 'rain'}]
Factor.getProbability
factor.getProbability({'W': 'sun'})
Factor.setProbability
factor.setProbability({'W': 'sun'}, probability):
Factor.unconditionedVariables
['W']
Factor.conditionedVariables
[]
Factor.variableDomainsDict
{'D': ['wet', 'dry'], 'W': ['sun', 'rain']}
P(unconditioned|conditioned)
"""
# typecheck portion
setsOfUnconditioned = [set(factor.unconditionedVariables()) for factor in factors]
if len(factors) > 1:
intersect = reduce(lambda x, y: x & y, setsOfUnconditioned)
if len(intersect) > 0:
print "Factor failed joinFactors typecheck: ", factor
raise ValueError, ("unconditionedVariables can only appear in one factor. \n"
+ "unconditionedVariables: " + str(intersect) +
"\nappear in more than one input factor.\n" +
"Input factors: \n" +
"\n".join(map(str, factors)))
"*** YOUR CODE HERE ***"
setsOfUnconditioned = [set(factor.unconditionedVariables()) for factor in factors]
setsOfUnconditioned = reduce(lambda x, y: x | y, setsOfUnconditioned)
setsOfConditioned = [set(factor.conditionedVariables()) for factor in factors]
setsOfConditioned = reduce(lambda x, y: x | y, setsOfConditioned)
overlap = setsOfUnconditioned.intersection(setsOfConditioned)
# print setsOfUnconditioned
# print setsOfConditioned
# print overlap
setsOfUnconditioned = setsOfUnconditioned.union(overlap)
setsOfConditioned = setsOfConditioned.difference(overlap)
# print 'NEW unconditioned'
# print setsOfUnconditioned
# print 'NEW conditioned'
# print setsOfConditioned
domain = factor.variableDomainsDict()
for factor in factors:
domain.update(factor.variableDomainsDict())
newFactor = Factor(setsOfUnconditioned, setsOfConditioned, domain)
for assignments in newFactor.getAllPossibleAssignmentDicts():
listP = [factor.getProbability(assignments) for factor in factors]
probability = 1
for p in listP:
probability *= p
newFactor.setProbability(assignments, probability)
return newFactor
示例12: inferenceByVariableElimination
# 需要导入模块: from bayesNet import Factor [as 别名]
# 或者: from bayesNet.Factor import getAllPossibleAssignmentDicts [as 别名]
def inferenceByVariableElimination(bayesNet, queryVariables, evidenceDict, eliminationOrder):
"""
Question 4: Your inference by variable elimination implementation
This function should perform a probabilistic inference query that
returns the factor:
P(queryVariables | evidenceDict)
It should perform inference by interleaving joining on a variable
and eliminating that variable, in the order of variables according
to eliminationOrder. See inferenceByEnumeration for an example on
how to use these functions.
You need to use joinFactorsByVariable to join all of the factors
that contain a variable in order for the autograder to
recognize that you performed the correct interleaving of
joins and eliminates.
If a factor that you are about to eliminate a variable from has
only one unconditioned variable, you should not eliminate it
and instead just discard the factor. This is since the
result of the eliminate would be 1 (you marginalize
all of the unconditioned variables), but it is not a
valid factor. So this simplifies using the result of eliminate.
The sum of the probabilities should sum to one (so that it is a true
conditional probability, conditioned on the evidence).
bayesNet: The Bayes Net on which we are making a query.
queryVariables: A list of the variables which are unconditioned
in the inference query.
evidenceDict: An assignment dict {variable : value} for the
variables which are presented as evidence
(conditioned) in the inference query.
eliminationOrder: The order to eliminate the variables in.
Hint: BayesNet.getAllCPTsWithEvidence will return all the Conditional
Probability Tables even if an empty dict (or None) is passed in for
evidenceDict. In this case it will not specialize any variable domains
in the CPTs.
Useful functions:
BayesNet.getAllCPTsWithEvidence
normalize
eliminate
joinFactorsByVariable
joinFactors
"""
# this is for autograding -- don't modify
joinFactorsByVariable = joinFactorsByVariableWithCallTracking(callTrackingList)
eliminate = eliminateWithCallTracking(callTrackingList)
if eliminationOrder is None: # set an arbitrary elimination order if None given
eliminationVariables = bayesNet.variablesSet() - set(queryVariables) -\
set(evidenceDict.keys())
eliminationOrder = sorted(list(eliminationVariables))
"*** YOUR CODE HERE ***"
# evidenceVariablesSet = set(evidenceDict.keys())
# queryVariablesSet = set(queryVariables)
# print evidenceVariablesSet
# print queryVariables
# print eliminationOrder
currentFactorsList = bayesNet.getAllCPTsWithEvidence(evidenceDict)
for elim_var in eliminationOrder:
currentFactorsList, joinedFactor = joinFactorsByVariable(currentFactorsList, elim_var)
if (len(joinedFactor.unconditionedVariables()) > 1):
elim_factor = eliminate(joinedFactor, elim_var)
currentFactorsList.append(elim_factor)
fullJointOverQueryAndEvidence = joinFactors(currentFactorsList)
queryConditionedOnEvidence = normalize(fullJointOverQueryAndEvidence)
set_of_unconditioned = set(queryVariables)
set_Of_variables = set(queryConditionedOnEvidence.variables())
variable_domains = queryConditionedOnEvidence.variableDomainsDict()
set_of_conditioned = set_Of_variables - set_of_unconditioned
new_factor = Factor(list(set_of_unconditioned), list(set_of_conditioned), variable_domains)
all_possible_assignments = new_factor.getAllPossibleAssignmentDicts()
for assignment in all_possible_assignments:
prob = queryConditionedOnEvidence.getProbability(assignment)
new_factor.setProbability(assignment, prob)
#print queryConditionedOnEvidence.unconditionedVariables()
#print queryConditionedOnEvidence.conditionedVariables()
return new_factor
示例13: eliminate
# 需要导入模块: from bayesNet import Factor [as 别名]
# 或者: from bayesNet.Factor import getAllPossibleAssignmentDicts [as 别名]
def eliminate(factor, eliminationVariable):
"""
Question 2: Your eliminate implementation
Input factor is a single factor.
Input eliminationVariable is the variable to eliminate from factor.
eliminationVariable must be an unconditioned variable in factor.
You should calculate the set of unconditioned variables and conditioned
variables for the factor obtained by eliminating the variable
eliminationVariable.
Return a new factor where all of the rows mentioning
eliminationVariable are summed with rows that match
assignments on the other variables.
Useful functions:
Factor.getAllPossibleAssignmentDicts
Factor.getProbability
Factor.setProbability
Factor.unconditionedVariables
Factor.conditionedVariables
Factor.variableDomainsDict
"""
# autograder tracking -- don't remove
if not (callTrackingList is None):
callTrackingList.append(('eliminate', eliminationVariable))
# typecheck portion
if eliminationVariable not in factor.unconditionedVariables():
print "Factor failed eliminate typecheck: ", factor
raise ValueError, ("Elimination variable is not an unconditioned variable " \
+ "in this factor\n" +
"eliminationVariable: " + str(eliminationVariable) + \
"\nunconditionedVariables:" + str(factor.unconditionedVariables()))
if len(factor.unconditionedVariables()) == 1:
print "Factor failed eliminate typecheck: ", factor
raise ValueError, ("Factor has only one unconditioned variable, so you " \
+ "can't eliminate \nthat variable.\n" + \
"eliminationVariable:" + str(eliminationVariable) + "\n" +\
"unconditionedVariables: " + str(factor.unconditionedVariables()))
"*** YOUR CODE HERE ***"
#print factor
unconditioned = factor.unconditionedVariables()
conditioned = factor.conditionedVariables()
for item in unconditioned:
if item == eliminationVariable:
unconditioned.remove(item)
for item in conditioned:
if item == eliminationVariable:
conditioned.remove(item)
variableDomainsDict = factor.variableDomainsDict()
newFactor = Factor(unconditioned, conditioned, factor.variableDomainsDict())
# print "newFactor"
# print newFactor
for newPossibleAssignment in newFactor.getAllPossibleAssignmentDicts():
# print("new possible assignment", newPossibleAssignment)
assignment = 0
for possibleAssignment in factor.getAllPossibleAssignmentDicts():
if all(item in possibleAssignment.items() for item in newPossibleAssignment.items()):
#check if newpossibleassignment is a subset of possibleassignment
# print("possible assignment", possibleAssignment)
prob = factor.getProbability(possibleAssignment)
# print("prob", prob)
assignment += prob
newFactor.setProbability(newPossibleAssignment, assignment)
return newFactor
示例14: joinFactors
# 需要导入模块: from bayesNet import Factor [as 别名]
# 或者: from bayesNet.Factor import getAllPossibleAssignmentDicts [as 别名]
def joinFactors(factors):
"""
Question 3: Your join implementation
Input factors is a list of factors.
You should calculate the set of unconditioned variables and conditioned
variables for the join of those factors.
Return a new factor that has those variables and whose probability entries
are product of the corresponding rows of the input factors.
You may assume that the variableDomainsDict for all the input
factors are the same, since they come from the same BayesNet.
joinFactors will only allow unconditionedVariables to appear in
one input factor (so their join is well defined).
Hint: Factor methods that take an assignmentDict as input
(such as getProbability and setProbability) can handle
assignmentDicts that assign more variables than are in that factor.
Useful functions:
Factor.getAllPossibleAssignmentDicts
Factor.getProbability
Factor.setProbability
Factor.unconditionedVariables
Factor.conditionedVariables
Factor.variableDomainsDict
"""
# typecheck portion
setsOfUnconditioned = [set(factor.unconditionedVariables()) for factor in factors]
if len(factors) > 1:
intersect = reduce(lambda x, y: x & y, setsOfUnconditioned)
if len(intersect) > 0:
print "Factor failed joinFactors typecheck: ", factor
raise ValueError, ("unconditionedVariables can only appear in one factor. \n"
+ "unconditionedVariables: " + str(intersect) +
"\nappear in more than one input factor.\n" +
"Input factors: \n" +
"\n".join(map(str, factors)))
total_conditioned_variables = set()
total_unconditioned_variables = set()
mega_variable_domains = {}
for factor in factors:
mega_variable_domains.update(factor.variableDomainsDict())
for factor in factors:
for unc_var in factor.unconditionedVariables():
total_unconditioned_variables.add(unc_var)
for con_var in factor.conditionedVariables():
total_conditioned_variables.add(con_var)
total_conditioned_variables.difference_update(total_unconditioned_variables)
new_factor = Factor(total_unconditioned_variables, total_conditioned_variables, mega_variable_domains)
for ass in new_factor.getAllPossibleAssignmentDicts():
multiple = 1
for factor in factors:
multiple *= factor.getProbability(ass)
Factor.setProbability(new_factor, ass, multiple)
return new_factor
示例15: normalize
# 需要导入模块: from bayesNet import Factor [as 别名]
# 或者: from bayesNet.Factor import getAllPossibleAssignmentDicts [as 别名]
def normalize(factor):
"""
Question 5: Your normalize implementation
Input factor is a single factor.
The set of conditioned variables for the normalized factor consists
of the input factor's conditioned variables as well as any of the
input factor's unconditioned variables with exactly one entry in their
domain. Since there is only one entry in that variable's domain, we
can either assume it was assigned as evidence to have only one variable
in its domain, or it only had one entry in its domain to begin with.
This blurs the distinction between evidence assignments and variables
with single value domains, but that is alright since we have to assign
variables that only have one value in their domain to that single value.
Return a new factor where the sum of the all the probabilities in the table is 1.
This should be a new factor, not a modification of this factor in place.
If the sum of probabilities in the input factor is 0,
you should return None.
This is intended to be used at the end of a probabilistic inference query.
Because of this, all variables that have more than one element in their
domain are assumed to be unconditioned.
There are more general implementations of normalize, but we will only
implement this version.
Useful functions:
Factor.getAllPossibleAssignmentDicts
Factor.getProbability
Factor.setProbability
Factor.unconditionedVariables
Factor.conditionedVariables
Factor.variableDomainsDict
"""
# typecheck portion
variableDomainsDict = factor.variableDomainsDict()
for conditionedVariable in factor.conditionedVariables():
if len(variableDomainsDict[conditionedVariable]) > 1:
print "Factor failed normalize typecheck: ", factor
raise ValueError, ("The factor to be normalized must have only one " + \
"assignment of the \n" + "conditional variables, " + \
"so that total probability will sum to 1\n" +
str(factor))
"*** YOUR CODE HERE ***"
# If the sum of probabilities in the input factor is 0,
# you should return None.
variableDomainsDict = factor.variableDomainsDict()
unconditioned = factor.unconditionedVariables()
conditioned = factor.conditionedVariables()
prob_sum = 0
old_assignments = factor.getAllPossibleAssignmentDicts()
for row in old_assignments:
prob_sum += factor.getProbability(row)
if prob_sum == 0:
return None
for var in unconditioned:
if len(variableDomainsDict[var]) == 1:
conditioned.add(var)
unconditioned = [var for var in unconditioned if var not in conditioned]
newFactor = Factor(unconditioned, conditioned, variableDomainsDict)
for assignment in newFactor.getAllPossibleAssignmentDicts():
prob = factor.getProbability(assignment)
newFactor.setProbability(assignment, prob / prob_sum)
return newFactor