本文整理汇总了Python中Scheduler.Scheduler.run_job方法的典型用法代码示例。如果您正苦于以下问题：Python Scheduler.run_job方法的具体用法？Python Scheduler.run_job怎么用？Python Scheduler.run_job使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类Scheduler.Scheduler的用法示例。
在下文中一共展示了Scheduler.run_job方法的1个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: __init__
# 需要导入模块: from Scheduler import Scheduler [as 别名]
# 或者: from Scheduler.Scheduler import run_job [as 别名]
#.........这里部分代码省略.........
finished = self.create_new_base_tree(better_trial_operations)
del better_trial_operations
if finished == True:
return False
self.write_log_file("")
self.write_log_file("")
self.iteration_number += 1
return True
def reconcile_base_tree(self, iteration_folder):
"""
Reconcile the base tree with every gene tree
"""
# Create base tree folder
base_tree_folder = iteration_folder+"/base/"
os.mkdir(base_tree_folder)
# Create and submit the cogbox
base_tree = copy.deepcopy(self.species_tree)
selected_trees = self.gene_trees.get_trees()
base_cogbox = CogBox(base_tree, \
self.gene_trees, \
selected_trees, \
self.penalty_dict, \
self.scheduler)
info_file_location = base_tree_folder+"input"
output_file_location = base_tree_folder+"output"
base_cogbox.run(info_file_location, output_file_location)
# Run the job and wait until finished
real_reconciliation_time = time.time()
self.scheduler.run_job()
self.scheduler.wait_until_finish()
real_reconciliation_time = time.time() - real_reconciliation_time
base_cogbox.statistics['real_run_time'] = real_reconciliation_time
base_cogbox.read_output()
return base_cogbox
def evaluate_base_tree(self, base_cogbox):
"""
Read the output and run some statistics on the base cogbox
"""
# Calculate statistics
self.write_log_file("Base Tree Weighted Score: "+\
str(base_cogbox.statistics['average_hgt_weighted_score']))
#str(base_cogbox.statistics['average_score']))
self.write_log_file("Base Tree Unique HGT: "+\
str(len(base_cogbox.statistics['hgt_frequencies'])))
self.write_log_file("Base Tree Unique Events: "+\
str(len(base_cogbox.statistics['event_frequencies'])))
self.write_log_file("Base Tree Real Time: "+\
str(base_cogbox.statistics['real_run_time']))
self.write_log_file("Base Tree CPU Time: "+\
str(base_cogbox.statistics['cpu_run_time']))
#return base_cogbox.statistics['average_score']
return base_cogbox.statistics['average_hgt_weighted_score']
def choose_sprs(self, base_cogbox):
"""
This method parses the output of the base tree reconciliations
It will then choose the best SPRs to run
"""