本文整理汇总了Python中Model.Model.initialize方法的典型用法代码示例。如果您正苦于以下问题：Python Model.initialize方法的具体用法？Python Model.initialize怎么用？Python Model.initialize使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类Model.Model的用法示例。
在下文中一共展示了Model.initialize方法的2个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: __init__
# 需要导入模块: from Model import Model [as 别名]
# 或者: from Model.Model import initialize [as 别名]
class Controller:
def __init__(self,viewType=None):
'''
construct an instance of the controller class
to use invoke the method initialize
'''
## determine location
cwd = os.getcwd()
if os.path.split(cwd)[1] == 'gdiqt4':
self.baseDir = cwd
elif os.path.split(cwd)[1] == 'tests':
self.baseDir = os.path.join(os.path.split(cwd)[0],'gdiqt4')
else:
print "ERROR: cannot determine current working directory"
## basic application wide variables
self.viewType = viewType
self.appName = "Gene Data Integrator"
self.fontName = 'Arial' #'Helvetica'
self.verbose = True
self.reset_workspace()
def reset_workspace(self):
self.projectID = None
self.homeDir = None
self.model = Model()
self.log = Logger()
self.subsampleIndices = None
def save(self):
self.log.write()
def initialize_project(self,projectID,loadExisting=False):
self.projectID = projectID
self.homeDir = os.path.join(self.baseDir,"projects",self.projectID)
self.log.initialize(self.projectID,self.homeDir,load=loadExisting)
self.model.initialize(self.projectID,self.homeDir)
##################################################################################################
#
# data dealings -- handling file, project, model and figure data
#
##################################################################################################
def create_new_project(self,view=None,projectID=None):
#fcsFileName = str(fcsFileName)
createNew = True
## create projects dir if necssary
if os.path.isdir(os.path.join(self.baseDir,'projects')) == False:
print "INFO: projects dir did not exist. creating..."
os.mkdir(os.path.join(self.baseDir,'projects'))
## get project id
if projectID != None:
pass
elif createNew == True and projectID == None:
projectID, ok = QtGui.QInputDialog.getText(view, self.appName, 'Enter the name of your new project:')
projectID = str(projectID)
if ok == False:
createNew = False
else:
createNew = False
print "ERROR: creating a new project"
if createNew == True:
print 'initializing project...'
self.initialize_project(projectID)
else:
print "WARNING: did not initialize project"
return False
# remove previous
if self.homeDir != None and os.path.exists(self.homeDir) == True and createNew == True:
print 'overwriting...', self.homeDir
self.remove_project(self.homeDir)
if createNew == True and self.homeDir != None:
os.mkdir(self.homeDir)
os.mkdir(os.path.join(self.homeDir,"data"))
os.mkdir(os.path.join(self.homeDir,"figs"))
os.mkdir(os.path.join(self.homeDir,"models"))
os.mkdir(os.path.join(self.homeDir,"results"))
return True
def remove_project(self,homeDir):
for fileOrDir in os.listdir(homeDir):
if os.path.isfile(os.path.join(homeDir,fileOrDir)) == True:
os.remove(os.path.join(homeDir,fileOrDir))
elif os.path.isdir(os.path.join(homeDir,fileOrDir)) == True:
for fileOrDir2 in os.listdir(os.path.join(homeDir,fileOrDir)):
if os.path.isfile(os.path.join(homeDir,fileOrDir,fileOrDir2)) == True:
os.remove(os.path.join(homeDir,fileOrDir,fileOrDir2))
elif os.path.isdir(os.path.join(homeDir,fileOrDir,fileOrDir2)) == True:
for fileOrDir3 in os.listdir(os.path.join(homeDir,fileOrDir,fileOrDir2)):
if os.path.isfile(os.path.join(homeDir,fileOrDir,fileOrDir2,fileOrDir3)) == True:
os.remove(os.path.join(homeDir,fileOrDir,fileOrDir2,fileOrDir3))
#.........这里部分代码省略.........
示例2: __init__
# 需要导入模块: from Model import Model [as 别名]
# 或者: from Model.Model import initialize [as 别名]
class Controller:
def __init__(self,configDict=None,debug=False):
"""
construct an instance of the controller class
to use invoke the method initialize
"""
## basic application wide variables
self.appName = "cytostream"
self.debug = debug
if self.debug == True:
self.verbose = True
self.defaultDir = os.path.join(self.baseDir,'projects')
else:
self.verbose = False
self.defaultDir = os.getenv("HOME")
## application variables
self.configDict = configDict
self.reset_workspace()
# get base directory
if hasattr(sys,'frozen'):
self.baseDir = os.path.dirname(sys.executable)
self.baseDir = re.sub("MacOS","Resources",self.baseDir)
else:
self.baseDir = os.path.dirname(__file__)
if os.path.split(self.baseDir)[-1] != "cytostream":
self.baseDir = os.path.join(self.baseDir,"cytostream")
if os.path.isdir(os.path.join(self.baseDir,'cytostream')) == True:
self.baseDir = os.path.join(self.baseDir,"cytostream")
def reset_workspace(self):
self.projectID = None
self.homeDir = None
self.model = Model(verbose=self.verbose)
self.log = None
self.subsampleIndices = None
self.fileChannelPath = None
self.baseDir = self.model.baseDir
self.currentPlotView = None
self.compensationFilePath= None
self.eventsList = []
self.fileNameList = None
self.channelDict = None
self.subsampleDict = {}
self.uniqueLabels = {}
self.labelsList = {}
self.labelsLogList = {}
self.pythonPath = self.model.pythonPath
def save(self):
self.log.write()
def initialize_project(self,homeDir,loadExisting=False):
## clean
#if clean == True:
self.homeDir = os.path.realpath(homeDir)
if loadExisting == False:
print '...cleaning home directory'
self.remove_project(self.homeDir)
os.mkdir(self.homeDir)
self.projectID = os.path.split(homeDir)[-1]
self.homeDir = homeDir
self.log = Logger(self.homeDir,configDict=self.configDict)
self.model.initialize(self.homeDir)
self.fileNameList = get_fcs_file_names(self.homeDir)
## this needs to be tested or modified for very large projects
self.eventsList = [self.model.get_events_from_file(fn) for fn in self.fileNameList]
if len(self.fileNameList) > 0:
self.fileChannels = self.model.get_file_channel_list(self.fileNameList[0])
else:
self.fileChannels = None
if self.channelDict == None:
self.channelDict = self.model.load_channel_dict()
def _labels_load(self,labelsID):
'''
load the labels from a given labelsID
Often the model run id is the labelsID
'''
if labelsID == None:
return
if self.labelsList.has_key(labelsID) == True:
return None
_labelsList = []
_logsList = []
#.........这里部分代码省略.........