本文整理汇总了Python中CGAT.SVGdraw.circle方法的典型用法代码示例。如果您正苦于以下问题：Python SVGdraw.circle方法的具体用法？Python SVGdraw.circle怎么用？Python SVGdraw.circle使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类CGAT.SVGdraw的用法示例。
在下文中一共展示了SVGdraw.circle方法的7个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: plotOrthologs
# 需要导入模块: from CGAT import SVGdraw [as 别名]
# 或者: from CGAT.SVGdraw import circle [as 别名]
def plotOrthologs(self):
"""plot orthologs orthologwise."""
# Do the plot
for ortholog_id in self.mOrthologs1.keys():
for o1 in self.mOrthologs1[ortholog_id]:
try:
x = self.getCoords1(o1)
except KeyError:
continue
for o2 in self.mOrthologs2[ortholog_id]:
try:
y = self.getCoords2(o2)
except KeyError:
continue
e = SVGdraw.circle(x, y,
self.mDotRadius,
fill="rgb(%i,%i,%i)" % BLACK,
stroke="rgb(%i,%i,%i)" % BLACK,
stroke_width=1)
self.addElement(e)示例2: addSeparator
# 需要导入模块: from CGAT import SVGdraw [as 别名]
# 或者: from CGAT.SVGdraw import circle [as 别名]
def addSeparator(self):
"""add separator on circles."""
if self.mRadius not in self.mSeparators:
e = SVGdraw.circle(self.mDataMiddleX, self.mDataMiddleY, self.mRadius, fill="none",
stroke="rgb(%i,%i,%i)" % self.mGridColour,
stroke_width=self.mGridStrokeWidth)
self.addWheelElement(e, self.mPlaneGrid)
self.mSeparators[self.mRadius] = 1示例3: getElements
# 需要导入模块: from CGAT import SVGdraw [as 别名]
# 或者: from CGAT.SVGdraw import circle [as 别名]
def getElements(self, node_id, x, y):
node = self.mTree.node(node_id)
e = []
p = node.data.support
if p == 1.0:
e.append(SVGdraw.circle(x, y, self.mRadius,
stroke="rgb(%i,%i,%i)" % SVGTree.BLACK,
fill="rgb(%i,%i,%i)" % SVGTree.RED))
elif p > 0.0:
e.append(SVGdraw.circle(x, y, self.mRadius,
stroke="rgb(%i,%i,%i)" % SVGTree.BLACK,
fill="rgb(%i,%i,%i)" % SVGTree.WHITE))
d = SVGdraw.pathdata(x, y)
d.line(x + self.mRadius, y)
angle = 360.0 * p
dx = self.mRadius * math.cos(math.radians(angle)) + x
dy = self.mRadius * math.sin(math.radians(angle)) + y
if p <= 0.5:
d.ellarc(self.mRadius, self.mRadius, 0, 0, 1, dx, dy)
else:
d.ellarc(self.mRadius, self.mRadius, 0, 1, 1, dx, dy)
e.append(SVGdraw.path(d,
stroke="rgb(%i,%i,%i)" % SVGTree.RED,
fill="rgb(%i,%i,%i)" % SVGTree.RED,
stroke_width=self.mStrokeWidth))
else:
pass
return e示例4: getElements
# 需要导入模块: from CGAT import SVGdraw [as 别名]
# 或者: from CGAT.SVGdraw import circle [as 别名]
def getElements(self, node_id, x, y):
e = []
colour = self.getColour(node_id, x, y)
if self.mPlotSymbol == "circle":
e.append(SVGdraw.circle(x + self.mFontSize / 2,
y,
self.mFontSize / 2,
stroke="rgb(%i,%i,%i)" % BLACK,
fill="rgb(%i,%i,%i)" % colour))
elif self.mPlotSymbol == "square":
e.append(SVGdraw.rect(x, y - self.mFontSize / 2,
self.mFontSize,
self.mFontSize,
stroke="rgb(%i,%i,%i)" % BLACK,
fill="rgb(%i,%i,%i)" % colour))
return e示例5: addDuplication
# 需要导入模块: from CGAT import SVGdraw [as 别名]
# 或者: from CGAT.SVGdraw import circle [as 别名]
#.........这里部分代码省略.........
########################################################
########################################################
########################################################
# draw points
########################################################
link_colour = master_colour
link_rad_width = self.mLinkRadStrokeWidth
link_arc_width = self.mLinkArcStrokeWidth
new_points = {}
for pos1, pos2, gene, quality, chr in points:
angle = self.getAngle((pos1 + pos2) / 2)
x, y = self.getPosOnArc(angle, self.mRadius)
try:
symbol = quality2symbol[quality]
except KeyError:
symbol = "rect"
if quality in quality2mask:
colour = self.mLinkColourSymbolMasked
link_colour = self.mLinkColourMasked
link_rad_width = self.mLinkStrokeWidthMasked
link_arc_width = self.mLinkStrokeWidthMasked
else:
colour = master_colour
if gene in self.mPreviousPoints:
continue
new_points[gene] = (x, y, angle, quality, chr)
if symbol == "circle":
ee = SVGdraw.circle(x, y, self.mLinkSymbolSize,
fill="rgb(%i,%i,%i)" % colour,
stroke="black",
stroke_width=self.mLinkStrokeWidthSymbol)
elif symbol == "rect":
ee = SVGdraw.rect(x - self.mLinkSymbolSize / 2, y - self.mLinkSymbolSize / 2,
self.mLinkSymbolSize, self.mLinkSymbolSize,
fill="rgb(%i,%i,%i)" % colour,
stroke="black",
stroke_width=self.mLinkStrokeWidthSymbol)
if url:
e = SVGdraw.link(url % gene)
e.addElement(ee)
else:
e = ee
self.addWheelElement(e)
########################################################
########################################################
########################################################
# write all arcs in between old points and new points
# cis: circular arc
# trans: radial arc
########################################################
angles = []
for x1, y1, angle1, quality1, chr1 in new_points.values():
# reduce clutter by not writing arc to the same angle示例6: plotGene
# 需要导入模块: from CGAT import SVGdraw [as 别名]
# 或者: from CGAT.SVGdraw import circle [as 别名]
def plotGene(self, x, y, gene=None, group_id=None):
"""plot a gene at x,y."""
if gene:
group_id = gene.mOrthologId
colour, format = self.mMapGroup2Colour[group_id]
filled, shape = format.split("-")
if filled == "filled":
fill = "rgb(%i,%i,%i)" % colour
stroke = "rgb(%i,%i,%i)" % BLACK
stroke_width = 1
elif filled == "open":
fill = "rgb(%i,%i,%i)" % WHITE
stroke = "rgb(%i,%i,%i)" % colour
stroke_width = self.mBlockSize / 2
if shape == "circle":
ee = SVGdraw.circle(x, y, self.mBlockSize, fill=fill, stroke=stroke, stroke_width=stroke_width)
elif shape == "box":
ee = SVGdraw.rect(
x - self.mBlockSize,
y - self.mBlockSize,
2 * self.mBlockSize,
2 * self.mBlockSize,
fill=fill,
stroke=stroke,
stroke_width=stroke_width,
)
elif shape == "lefttriangle":
ee = SVGdraw.polygon(
(
(x - self.mBlockSize, y),
(x + self.mBlockSize, y - self.mBlockSize),
(x + self.mBlockSize, y + self.mBlockSize),
),
fill=fill,
stroke=stroke,
stroke_width=stroke_width,
)
elif shape == "righttriangle":
ee = SVGdraw.polygon(
(
(x - self.mBlockSize, y - self.mBlockSize),
(x + self.mBlockSize, y),
(x - self.mBlockSize, y + self.mBlockSize),
),
fill=fill,
stroke=stroke,
stroke_width=stroke_width,
)
elif shape == "uptriangle":
ee = SVGdraw.polygon(
(
(x, y - self.mBlockSize),
(x + self.mBlockSize, y + self.mBlockSize),
(x - self.mBlockSize, y + self.mBlockSize),
),
fill="rgb(%i,%i,%i)" % WHITE,
stroke="rgb(%i,%i,%i)" % colour,
stroke_width=self.mBlockSize / 2,
)
elif shape == "downtriangle":
ee = SVGdraw.polygon(
(
(x, y + self.mBlockSize),
(x + self.mBlockSize, y - self.mBlockSize),
(x - self.mBlockSize, y - self.mBlockSize),
),
fill="rgb(%i,%i,%i)" % WHITE,
stroke="rgb(%i,%i,%i)" % colour,
stroke_width=self.mBlockSize / 2,
)
return ee示例7: addDuplication
# 需要导入模块: from CGAT import SVGdraw [as 别名]
# 或者: from CGAT.SVGdraw import circle [as 别名]
#.........这里部分代码省略.........
# get points of center
old_x1, old_y1 = self.getPosOnArcForRadius( (self.mPreviousMax + self.mPreviousMin) / 2, r1 )
new_x1, new_y1 = self.getPosOnArcForRadius( (ma + mi) / 2, r2 )
# lines for interleaved spans: skip
if not ((self.mPreviousMin < mi and self.mPreviousMax > ma) or \
(self.mPreviousMin > mi and self.mPreviousMax < ma)) :
## d = SVGdraw.pathdata( old_x2, old_y2 )
## d.line( new_x2, new_y2 )
## d.move( new_x1, new_y1 )
## d.line( old_x1, old_y1 )
## d.move( old_x2, old_y2 )
## e = SVGdraw.path( d,
## fill = "none",
## stroke = "rgb(%i,%i,%i)" % BLACK,
## stroke_width = self.mMarkerWidth / 2 )
e = SVGdraw.line( old_x1, old_y1,
new_x1, new_y1,
fill = "none",
stroke = "rgb(%i,%i,%i)" % GREY,
stroke_width = self.mMarkerWidth / 2 )
else:
# lines for covering spans, as these overlaps
e = None
## e = SVGdraw.line( old_x1, old_y1,
## new_x1, new_y1,
## fill = "none",
## stroke = "rgb(%i,%i,%i)" % GREY,
## stroke_width = self.mMarkerWidth / 2 )
if e:
self.addElement( e, self.mPlaneJoins )
self.mPreviousMin = mi
self.mPreviousMax = ma
self.mPreviousCis = cis
self.mRadiusMax = max(self.mRadius, self.mRadiusMax)
## draw points
link_colour = master_colour
link_width = 10
for pos1, pos2, gene, quality in points:
angle = self.getAngle( (pos1 + pos2) / 2 )
x,y = self.getPosOnArc( angle, self.mRadius )
try:
symbol = quality2symbol[quality]
except KeyError:
symbol = "rect"
if quality in quality2mask:
colour = GREY
link_colour = GREY
link_width = 1
else:
colour = master_colour
if symbol == "circle":
ee = SVGdraw.circle( x, y, self.mMarkerWidth,
fill = "rgb(%i,%i,%i)" % colour,
stroke="black",
stroke_width= 1)
elif symbol == "rect":
ee = SVGdraw.rect( x-self.mMarkerWidth/2, y-self.mMarkerWidth/2,
self.mMarkerWidth, self.mMarkerWidth,
fill = "rgb(%i,%i,%i)" % colour,
stroke="black",
stroke_width= 1)
if url:
e = SVGdraw.link( url % gene )
e.addElement( ee )
else:
e = ee
self.addElement( e )
angle1 = self.getAngle( mi )
angle2 = self.getAngle( ma )
x1,y1 = self.getPosOnArc( angle1, self.mRadius )
x2,y2 = self.getPosOnArc( angle2, self.mRadius )
d = SVGdraw.pathdata( x1, y1 )
if cis:
d.ellarc( self.mRadius, self.mRadius, 0, 0, 1, x2, y2 )
else:
d.ellarc( self.mRadius * 2, self.mRadius * 2, 0, 0, 0, x2, y2 )
e = SVGdraw.path( d,
fill = "none",
stroke = "rgb(%i,%i,%i)" % link_colour,
stroke_width = link_width )
self.addElement(e)