本文整理汇总了Python中Bio.Seq.MutableSeq.translate方法的典型用法代码示例。如果您正苦于以下问题：Python MutableSeq.translate方法的具体用法？Python MutableSeq.translate怎么用？Python MutableSeq.translate使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类Bio.Seq.MutableSeq的用法示例。
在下文中一共展示了MutableSeq.translate方法的1个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: classifydict
# 需要导入模块: from Bio.Seq import MutableSeq [as 别名]
# 或者: from Bio.Seq.MutableSeq import translate [as 别名]
converted = classifydict(value)
for nucleotide, valuen in converted.items():
if int(valuen[0]) > 0 and float(valuen[2]) < float(args.minqual):
count +=1
# now check for synonymity, move this to functions
alternativeSeq = MutableSeq(str(element.seq[start:stop]), generic_dna)
## print nucleotide
alternativeSeq = mutateSequence(alternativeSeq,sub_element,nucleotide,start)
alternativeSeq = Seq(str(alternativeSeq), generic_dna)
if len(alternativeSeq)%3 != 0:
overlap = len(alternativeSeq)%3
alternativeSeq = alternativeSeq[:-int(overlap)]
altprot = alternativeSeq.translate()
altprot = list2dict(altprot[0:len(protein)],0)
protposition = int((sub_element-start)/3)
try:
if protein[protposition] != altprot[protposition]:
positionList.append(sub_element)
synonym = 'NonSynon'
if protein[protposition] == altprot[protposition]:
synonym = 'Syn'
except:
synonym = 'Unknown'
# correct against python specific error of starting count at 0.
truepos = int(sub_element)+1