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Python MutableSeq.translate方法代码示例

本文整理汇总了Python中Bio.Seq.MutableSeq.translate方法的典型用法代码示例。如果您正苦于以下问题:Python MutableSeq.translate方法的具体用法?Python MutableSeq.translate怎么用?Python MutableSeq.translate使用的例子?那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在Bio.Seq.MutableSeq的用法示例。


在下文中一共展示了MutableSeq.translate方法的1个代码示例,这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞,您的评价将有助于系统推荐出更棒的Python代码示例。

示例1: classifydict

# 需要导入模块: from Bio.Seq import MutableSeq [as 别名]
# 或者: from Bio.Seq.MutableSeq import translate [as 别名]
                    converted = classifydict(value)
                    for nucleotide, valuen in converted.items():
                        if int(valuen[0]) > 0 and float(valuen[2]) < float(args.minqual):
                            count +=1


                            # now check for synonymity,  move this to functions
                            alternativeSeq = MutableSeq(str(element.seq[start:stop]), generic_dna)
##                            print nucleotide
                            alternativeSeq = mutateSequence(alternativeSeq,sub_element,nucleotide,start)
                            alternativeSeq = Seq(str(alternativeSeq), generic_dna)
                            if len(alternativeSeq)%3 != 0:
                                overlap = len(alternativeSeq)%3
                                alternativeSeq = alternativeSeq[:-int(overlap)]
                            
                            altprot = alternativeSeq.translate()
                            altprot = list2dict(altprot[0:len(protein)],0)

                            protposition = int((sub_element-start)/3)
                            try:
                                if protein[protposition] != altprot[protposition]:
                                    positionList.append(sub_element)
                                    synonym = 'NonSynon'
                                if protein[protposition] == altprot[protposition]:
                                    synonym = 'Syn'
                            except:
                                synonym = 'Unknown'

                            # correct against python specific error of starting count at 0. 

                            truepos = int(sub_element)+1
开发者ID:Ethuer,项目名称:SNPdeRNA,代码行数:33,代码来源:SAM2SNP_Modulated.py


注:本文中的Bio.Seq.MutableSeq.translate方法示例由纯净天空整理自Github/MSDocs等开源代码及文档管理平台,相关代码片段筛选自各路编程大神贡献的开源项目,源码版权归原作者所有,传播和使用请参考对应项目的License;未经允许,请勿转载。