本文整理汇总了Python中Bio.Seq.MutableSeq.__init__方法的典型用法代码示例。如果您正苦于以下问题：Python MutableSeq.__init__方法的具体用法？Python MutableSeq.__init__怎么用？Python MutableSeq.__init__使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类Bio.Seq.MutableSeq的用法示例。
在下文中一共展示了MutableSeq.__init__方法的1个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: __init__
# 需要导入模块: from Bio.Seq import MutableSeq [as 别名]
# 或者: from Bio.Seq.MutableSeq import __init__ [as 别名]
def __init__(self, sequence, hmmLength, origSeqLength, evalue, seqStart=None, seqEnd=None, hmmStart=None, hmmEnd=None):
"""Intialise HMMSequence with the hmmer unit. Must run align and
determineGapPositions.
Parameters:
unit - HMMUnit object.
hmmLength - int. length of the HMM.
align - boolean. Enables alignment algorithm based on HMM values.
See HMMSequence.align() for more info.
gaps - boolean. Enables gap counting algorithm to create pileup.
See HMMSequence.determineGapPositions()
"""
self.hmmLength = int(hmmLength)
self.gaps = [0]*self.hmmLength
self.origSeqLength = origSeqLength
self.evalue = evalue
self.seqStart = seqStart
self.seqEnd = seqEnd
self.hmmStart = hmmStart
self.hmmEnd = hmmEnd
HMMPileUp.total_seqs += 1
MutableSeq.__init__(self, sequence)