PHP ArticleSearchIndex::updateFileIndex方法代码示例

 /**
  * Save changes to the supplementary file.
  * @return int the supplementary file ID
  */
 function execute($fileName = null)
 {
     import("file.ArticleFileManager");
     $articleFileManager =& new ArticleFileManager($this->article->getArticleId());
     $suppFileDao =& DAORegistry::getDAO('SuppFileDAO');
     $fileName = isset($fileName) ? $fileName : 'uploadSuppFile';
     if (isset($this->suppFile)) {
         $suppFile =& $this->suppFile;
         // Upload file, if file selected.
         if ($articleFileManager->uploadedFileExists($fileName)) {
             $articleFileManager->uploadSuppFile($fileName, $suppFile->getFileId());
             import('search.ArticleSearchIndex');
             ArticleSearchIndex::updateFileIndex($this->article->getArticleId(), ARTICLE_SEARCH_SUPPLEMENTARY_FILE, $suppFile->getFileId());
         }
         // Index metadata
         ArticleSearchIndex::indexSuppFileMetadata($suppFile);
         // Update existing supplementary file
         $this->setSuppFileData($suppFile);
         $suppFileDao->updateSuppFile($suppFile);
     } else {
         // Upload file, if file selected.
         if ($articleFileManager->uploadedFileExists($fileName)) {
             $fileId = $articleFileManager->uploadSuppFile($fileName);
             import('search.ArticleSearchIndex');
             ArticleSearchIndex::updateFileIndex($this->article->getArticleId(), ARTICLE_SEARCH_SUPPLEMENTARY_FILE, $fileId);
         } else {
             $fileId = 0;
         }
         // Insert new supplementary file
         $suppFile =& new SuppFile();
         $suppFile->setArticleId($this->article->getArticleId());
         $suppFile->setFileId($fileId);
         $this->setSuppFileData($suppFile);
         $suppFileDao->insertSuppFile($suppFile);
         $this->suppFileId = $suppFile->getSuppFileId();
     }
     return $this->suppFileId;
 }

//.........这里部分代码省略.........
     foreach (array_keys($tempFileIds) as $locale) {
         $temporaryFile = $temporaryFileManager->getFile($tempFileIds[$locale], $user->getId());
         $fileId = null;
         if ($temporaryFile) {
             $fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, ARTICLE_FILE_SUBMISSION);
             $fileType = $temporaryFile->getFileType();
             if (strstr($fileType, 'html')) {
                 import('classes.article.ArticleHTMLGalley');
                 $galley = new ArticleHTMLGalley();
             } else {
                 import('classes.article.ArticleGalley');
                 $galley = new ArticleGalley();
             }
             $galley->setArticleId($articleId);
             $galley->setFileId($fileId);
             $galley->setLocale($locale);
             if ($galley->isHTMLGalley()) {
                 $galley->setLabel('HTML');
             } else {
                 if (strstr($fileType, 'pdf')) {
                     $galley->setLabel('PDF');
                 } else {
                     if (strstr($fileType, 'postscript')) {
                         $galley->setLabel('Postscript');
                     } else {
                         if (strstr($fileType, 'xml')) {
                             $galley->setLabel('XML');
                         } else {
                             $galley->setLabel(__('common.untitled'));
                         }
                     }
                 }
             }
             $galleyDao =& DAORegistry::getDAO('ArticleGalleyDAO');
             $galleyDao->insertGalley($galley);
         }
         if ($locale == $journal->getPrimaryLocale()) {
             $article->setSubmissionFileId($fileId);
             $article->SetReviewFileId($fileId);
         }
         // Update file search index
         import('classes.search.ArticleSearchIndex');
         if (isset($galley)) {
             ArticleSearchIndex::updateFileIndex($galley->getArticleId(), ARTICLE_SEARCH_GALLEY_FILE, $galley->getFileId());
         }
     }
     // Designate this as the review version by default.
     $authorSubmissionDao =& DAORegistry::getDAO('AuthorSubmissionDAO');
     $authorSubmission =& $authorSubmissionDao->getAuthorSubmission($articleId);
     import('classes.submission.author.AuthorAction');
     AuthorAction::designateReviewVersion($authorSubmission, true);
     // Accept the submission
     $sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($articleId);
     $articleFileManager = new ArticleFileManager($articleId);
     $sectionEditorSubmission->setReviewFile($articleFileManager->getFile($article->getSubmissionFileId()));
     import('classes.submission.sectionEditor.SectionEditorAction');
     SectionEditorAction::recordDecision($sectionEditorSubmission, SUBMISSION_EDITOR_DECISION_ACCEPT);
     // Create signoff infrastructure
     $copyeditInitialSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_INITIAL', ASSOC_TYPE_ARTICLE, $articleId);
     $copyeditAuthorSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId);
     $copyeditFinalSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_FINAL', ASSOC_TYPE_ARTICLE, $articleId);
     $copyeditInitialSignoff->setUserId(0);
     $copyeditAuthorSignoff->setUserId($user->getId());
     $copyeditFinalSignoff->setUserId(0);
     $signoffDao->updateObject($copyeditInitialSignoff);
     $signoffDao->updateObject($copyeditAuthorSignoff);
     $signoffDao->updateObject($copyeditFinalSignoff);
     $layoutSignoff = $signoffDao->build('SIGNOFF_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId);
     $layoutSignoff->setUserId(0);
     $signoffDao->updateObject($layoutSignoff);
     $proofAuthorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId);
     $proofProofreaderSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_PROOFREADER', ASSOC_TYPE_ARTICLE, $articleId);
     $proofLayoutEditorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId);
     $proofAuthorSignoff->setUserId($user->getId());
     $proofProofreaderSignoff->setUserId(0);
     $proofLayoutEditorSignoff->setUserId(0);
     $signoffDao->updateObject($proofAuthorSignoff);
     $signoffDao->updateObject($proofProofreaderSignoff);
     $signoffDao->updateObject($proofLayoutEditorSignoff);
     import('classes.author.form.submit.AuthorSubmitForm');
     AuthorSubmitForm::assignEditors($article);
     $articleDao->updateArticle($article);
     // Add to end of editing queue
     import('classes.submission.editor.EditorAction');
     if (isset($galley)) {
         EditorAction::expediteSubmission($article);
     }
     if ($this->getData('destination') == "issue") {
         // Add to an existing issue
         $issueId = $this->getData('issueId');
         $this->scheduleForPublication($articleId, $issueId);
     }
     // Index article.
     import('classes.search.ArticleSearchIndex');
     ArticleSearchIndex::indexArticleMetadata($article);
     // Import the references list.
     $citationDao =& DAORegistry::getDAO('CitationDAO');
     $rawCitationList = $article->getCitations();
     $citationDao->importCitations($request, ASSOC_TYPE_ARTICLE, $articleId, $rawCitationList);
 }

 /**
  * Rush a new submission into the end of the editing queue.
  * @param $article object
  */
 function expediteSubmission($article, $request)
 {
     $user =& $request->getUser();
     import('classes.submission.editor.EditorAction');
     import('classes.submission.sectionEditor.SectionEditorAction');
     import('classes.submission.proofreader.ProofreaderAction');
     $sectionEditorSubmissionDao =& DAORegistry::getDAO('SectionEditorSubmissionDAO');
     $sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($article->getId());
     $submissionFile = $sectionEditorSubmission->getSubmissionFile();
     // Add a log entry before doing anything.
     import('classes.article.log.ArticleLog');
     import('classes.article.log.ArticleEventLogEntry');
     ArticleLog::logEvent($request, $article, ARTICLE_LOG_EDITOR_EXPEDITE, 'log.editor.submissionExpedited', array('editorName' => $user->getFullName()));
     // 1. Ensure that an editor is assigned.
     $editAssignments =& $sectionEditorSubmission->getEditAssignments();
     if (empty($editAssignments)) {
         // No editors are currently assigned; assign self.
         EditorAction::assignEditor($article->getId(), $user->getId(), true, false, $request);
     }
     // 2. Accept the submission and send to copyediting.
     $sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($article->getId());
     if (!$sectionEditorSubmission->getFileBySignoffType('SIGNOFF_COPYEDITING_INITIAL', true)) {
         SectionEditorAction::recordDecision($sectionEditorSubmission, SUBMISSION_EDITOR_DECISION_ACCEPT, $request);
         $reviewFile = $sectionEditorSubmission->getReviewFile();
         SectionEditorAction::setCopyeditFile($sectionEditorSubmission, $reviewFile->getFileId(), $reviewFile->getRevision(), $request);
     }
     // 3. Add a galley.
     $sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($article->getId());
     $galleys =& $sectionEditorSubmission->getGalleys();
     if (empty($galleys)) {
         // No galley present -- use copyediting file.
         import('classes.file.ArticleFileManager');
         $copyeditFile =& $sectionEditorSubmission->getFileBySignoffType('SIGNOFF_COPYEDITING_INITIAL');
         $fileType = $copyeditFile->getFileType();
         $articleFileManager = new ArticleFileManager($article->getId());
         $fileId = $articleFileManager->copyPublicFile($copyeditFile->getFilePath(), $fileType);
         if (strstr($fileType, 'html')) {
             $galley = new ArticleHTMLGalley();
         } else {
             $galley = new ArticleGalley();
         }
         $galley->setArticleId($article->getId());
         $galley->setFileId($fileId);
         $galley->setLocale(AppLocale::getLocale());
         if ($galley->isHTMLGalley()) {
             $galley->setLabel('HTML');
         } else {
             if (strstr($fileType, 'pdf')) {
                 $galley->setLabel('PDF');
             } else {
                 if (strstr($fileType, 'postscript')) {
                     $galley->setLabel('Postscript');
                 } else {
                     if (strstr($fileType, 'xml')) {
                         $galley->setLabel('XML');
                     } else {
                         $galley->setLabel(__('common.untitled'));
                     }
                 }
             }
         }
         $galleyDao =& DAORegistry::getDAO('ArticleGalleyDAO');
         $galleyDao->insertGalley($galley);
         // Update file search index
         import('classes.search.ArticleSearchIndex');
         ArticleSearchIndex::updateFileIndex($article->getId(), ARTICLE_SEARCH_GALLEY_FILE, $fileId);
     }
     $sectionEditorSubmission->setStatus(STATUS_QUEUED);
     $sectionEditorSubmissionDao->updateSectionEditorSubmission($sectionEditorSubmission);
 }

 /**
  * Save changes to the galley.
  * @return int the galley ID
  */
 function execute($fileName = null)
 {
     import('file.ArticleFileManager');
     $articleFileManager =& new ArticleFileManager($this->articleId);
     $galleyDao =& DAORegistry::getDAO('ArticleGalleyDAO');
     $fileName = isset($fileName) ? $fileName : 'galleyFile';
     $journal =& Request::getJournal();
     if (isset($this->galley)) {
         $galley =& $this->galley;
         // Upload galley file
         if ($articleFileManager->uploadedFileExists($fileName)) {
             if ($galley->getFileId()) {
                 $articleFileManager->uploadPublicFile($fileName, $galley->getFileId());
             } else {
                 $fileId = $articleFileManager->uploadPublicFile($fileName);
                 $galley->setFileId($fileId);
             }
             // Update file search index
             import('search.ArticleSearchIndex');
             ArticleSearchIndex::updateFileIndex($this->articleId, ARTICLE_SEARCH_GALLEY_FILE, $galley->getFileId());
         }
         if ($articleFileManager->uploadedFileExists('styleFile')) {
             // Upload stylesheet file
             $styleFileId = $articleFileManager->uploadPublicFile('styleFile', $galley->getStyleFileId());
             $galley->setStyleFileId($styleFileId);
         } else {
             if ($this->getData('deleteStyleFile')) {
                 // Delete stylesheet file
                 $styleFile =& $galley->getStyleFile();
                 if (isset($styleFile)) {
                     $articleFileManager->deleteFile($styleFile->getFileId());
                 }
             }
         }
         // Update existing galley
         $galley->setLabel($this->getData('label'));
         if ($journal->getSetting('enablePublicGalleyId')) {
             $galley->setPublicGalleyId($this->getData('publicGalleyId'));
         }
         $galley->setLocale($this->getData('galleyLocale'));
         $galleyDao->updateGalley($galley);
     } else {
         // Upload galley file
         if ($articleFileManager->uploadedFileExists($fileName)) {
             $fileType = $articleFileManager->getUploadedFileType($fileName);
             $fileId = $articleFileManager->uploadPublicFile($fileName);
             // Update file search index
             import('search.ArticleSearchIndex');
             ArticleSearchIndex::updateFileIndex($this->articleId, ARTICLE_SEARCH_GALLEY_FILE, $fileId);
         } else {
             $fileId = 0;
         }
         if (isset($fileType) && strstr($fileType, 'html')) {
             // Assume HTML galley
             $galley =& new ArticleHTMLGalley();
         } else {
             $galley =& new ArticleGalley();
         }
         $galley->setArticleId($this->articleId);
         $galley->setFileId($fileId);
         if ($this->getData('label') == null) {
             // Generate initial label based on file type
             $enablePublicGalleyId = $journal->getSetting('enablePublicGalleyId');
             if ($galley->isHTMLGalley()) {
                 $galley->setLabel('HTML');
                 if ($enablePublicGalleyId) {
                     $galley->setPublicGalleyId('html');
                 }
             } else {
                 if (isset($fileType)) {
                     if (strstr($fileType, 'pdf')) {
                         $galley->setLabel('PDF');
                         if ($enablePublicGalleyId) {
                             $galley->setPublicgalleyId('pdf');
                         }
                     } else {
                         if (strstr($fileType, 'postscript')) {
                             $galley->setLabel('PostScript');
                             if ($enablePublicGalleyId) {
                                 $galley->setPublicgalleyId('ps');
                             }
                         } else {
                             if (strstr($fileType, 'xml')) {
                                 $galley->setLabel('XML');
                                 if ($enablePublicGalleyId) {
                                     $galley->setPublicgalleyId('xml');
                                 }
                             }
                         }
                     }
                 }
             }
             if ($galley->getLabel() == null) {
                 $galley->setLabel(Locale::translate('common.untitled'));
             }
         } else {
//.........这里部分代码省略.........

 /**
  * Index all article files (supplementary and galley).
  * @param $article Article
  */
 function indexArticleFiles(&$article)
 {
     // Index supplementary files
     $fileDao =& DAORegistry::getDAO('SuppFileDAO');
     $files =& $fileDao->getSuppFilesByArticle($article->getId());
     foreach ($files as $file) {
         if ($file->getFileId()) {
             ArticleSearchIndex::updateFileIndex($article->getId(), ARTICLE_SEARCH_SUPPLEMENTARY_FILE, $file->getFileId());
         }
         ArticleSearchIndex::indexSuppFileMetadata($file);
     }
     unset($files);
     // Index galley files
     $fileDao =& DAORegistry::getDAO('ArticleGalleyDAO');
     $files =& $fileDao->getGalleysByArticle($article->getId());
     foreach ($files as $file) {
         if ($file->getFileId()) {
             ArticleSearchIndex::updateFileIndex($article->getId(), ARTICLE_SEARCH_GALLEY_FILE, $file->getFileId());
         }
     }
 }

//.........这里部分代码省略.........
             }
             $author->setBiography($authors[$i]['biography'], null);
             $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
             $author->setSequence($authors[$i]['seq']);
             if ($isExistingAuthor == false) {
                 $article->addAuthor($author);
             }
         }
     }
     // Check whether the user gave a handle and create a handleSubmissionFile in case
     $submissionHandle = $this->getData('submissionHandle');
     $handleSubmissionFileId;
     $handleCheck = FALSE;
     //import FileManager before creating files because otherwise naming of the copied files failes
     import('classes.file.ArticleFileManager');
     foreach (array_keys($submissionHandle) as $locale) {
         if (!empty($submissionHandle[$locale])) {
             $this->deleteOldFile("submission/original", $articleId);
             // $this->deleteOldFile("submission/copyedit", $articleId);
             $handleCheck = TRUE;
             $handleSubmissionId = $this->createHandleTXTFile($submissionHandle[$locale], $articleId, 'submission');
             $handleSubmissionPDFId = $this->createHandlePDF($submissionHandle[$locale], $articleId, 'submission');
             //Add the handle submission files as galley
             $this->setGalley($articleId, $handleSubmissionPDFId, $locale, 'application/pdf');
         }
         if ($handleCheck == TRUE) {
             if ($locale == $journal->getPrimaryLocale()) {
                 $article->setSubmissionFileId($handleSubmissionPDFId);
                 $article->SetReviewFileId($handleSubmissionPDFId);
             }
             // Update file search index
             import('classes.search.ArticleSearchIndex');
             if (isset($galley)) {
                 ArticleSearchIndex::updateFileIndex($galley->getArticleId(), ARTICLE_SEARCH_GALLEY_FILE, $galley->getFileId());
             }
         }
     }
     // Add the submission files as galleys
     import('classes.file.TemporaryFileManager');
     import('classes.file.ArticleFileManager');
     $tempFileIds = $this->getData('tempFileId');
     $temporaryFileManager = new TemporaryFileManager();
     $articleFileManager = new ArticleFileManager($articleId);
     $tempFileCheck = FALSE;
     foreach (array_keys($tempFileIds) as $locale) {
         $temporaryFile = $temporaryFileManager->getFile($tempFileIds[$locale], $user->getId());
         $fileId = null;
         if ($temporaryFile) {
             $this->deleteOldFile("submission/original", $articleId);
             $this->deleteOldFile("submission/copyedit", $articleId);
             $tempFileCheck = TRUE;
             $fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, ARTICLE_FILE_SUBMISSION);
             $fileType = $temporaryFile->getFileType();
             $this->setGalley($articleId, $fileId, $locale, $fileType);
             // $galley =& $this->setGalley($articleId, $fileId, $locale, $fileType);
         }
         if ($tempFileCheck == TRUE) {
             if ($locale == $journal->getPrimaryLocale()) {
                 $article->setSubmissionFileId($fileId);
                 $article->SetReviewFileId($fileId);
             }
             // Update file search index
             import('classes.search.ArticleSearchIndex');
             if (isset($galley)) {
                 ArticleSearchIndex::updateFileIndex($galley->getArticleId(), ARTICLE_SEARCH_GALLEY_FILE, $galley->getFileId());
             }

 /**
  * Save changes to the galley.
  * @return int the galley ID
  */
 function execute($fileName = null, $createRemote = false)
 {
     import('classes.file.ArticleFileManager');
     $articleFileManager = new ArticleFileManager($this->articleId);
     $galleyDao =& DAORegistry::getDAO('ArticleGalleyDAO');
     $fileName = isset($fileName) ? $fileName : 'galleyFile';
     $journal =& Request::getJournal();
     $fileId = null;
     if (isset($this->galley)) {
         $galley =& $this->galley;
         // Upload galley file
         if ($articleFileManager->uploadedFileExists($fileName)) {
             if ($galley->getFileId()) {
                 $articleFileManager->uploadPublicFile($fileName, $galley->getFileId());
                 $fileId = $galley->getFileId();
             } else {
                 $fileId = $articleFileManager->uploadPublicFile($fileName);
                 $galley->setFileId($fileId);
             }
             // Update file search index
             import('classes.search.ArticleSearchIndex');
             ArticleSearchIndex::updateFileIndex($this->articleId, ARTICLE_SEARCH_GALLEY_FILE, $galley->getFileId());
         }
         if ($articleFileManager->uploadedFileExists('styleFile')) {
             // Upload stylesheet file
             $styleFileId = $articleFileManager->uploadPublicFile('styleFile', $galley->getStyleFileId());
             $galley->setStyleFileId($styleFileId);
         } else {
             if ($this->getData('deleteStyleFile')) {
                 // Delete stylesheet file
                 $styleFile =& $galley->getStyleFile();
                 if (isset($styleFile)) {
                     $articleFileManager->deleteFile($styleFile->getFileId());
                 }
             }
         }
         // Update existing galley
         $galley->setLabel($this->getData('label'));
         if ($journal->getSetting('enablePublicGalleyId')) {
             $galley->setStoredPubId('publisher-id', $this->getData('publicGalleyId'));
         }
         $galley->setLocale($this->getData('galleyLocale'));
         if ($this->getData('remoteURL')) {
             $galley->setRemoteURL($this->getData('remoteURL'));
         }
         // consider the additional field names from the public identifer plugins
         import('classes.plugins.PubIdPluginHelper');
         $pubIdPluginHelper = new PubIdPluginHelper();
         $pubIdPluginHelper->execute($this, $galley);
         parent::execute();
         $galleyDao->updateGalley($galley);
     } else {
         // Upload galley file
         if ($articleFileManager->uploadedFileExists($fileName)) {
             $fileType = $articleFileManager->getUploadedFileType($fileName);
             $fileId = $articleFileManager->uploadPublicFile($fileName);
         }
         if (isset($fileType) && strstr($fileType, 'html')) {
             // Assume HTML galley
             $galley = new ArticleHTMLGalley();
         } else {
             $galley = new ArticleGalley();
         }
         $galley->setArticleId($this->articleId);
         $galley->setFileId($fileId);
         if ($this->getData('label') == null) {
             // Generate initial label based on file type
             $enablePublicGalleyId = $journal->getSetting('enablePublicGalleyId');
             if ($galley->isHTMLGalley()) {
                 $galley->setLabel('HTML');
                 if ($enablePublicGalleyId) {
                     $galley->setStoredPubId('publisher-id', 'html');
                 }
             } else {
                 if ($createRemote) {
                     $galley->setLabel(__('common.remote'));
                     $galley->setRemoteURL(__('common.remoteURL'));
                     if ($enablePublicGalleyId) {
                         $galley->setPublicGalleyId(strtolower(__('common.remote')));
                     }
                 } else {
                     if (isset($fileType)) {
                         if (strstr($fileType, 'pdf')) {
                             $galley->setLabel('PDF');
                             if ($enablePublicGalleyId) {
                                 $galley->setStoredPubId('publisher-id', 'pdf');
                             }
                         } else {
                             if (strstr($fileType, 'postscript')) {
                                 $galley->setLabel('PostScript');
                                 if ($enablePublicGalleyId) {
                                     $galley->setStoredPubId('publisher-id', 'ps');
                                 }
                             } else {
                                 if (strstr($fileType, 'xml')) {
                                     $galley->setLabel('XML');
//.........这里部分代码省略.........

 /**
  * Save changes to the supplementary file.
  * @return int the supplementary file ID
  */
 function execute($fileName = null, $createRemote = false)
 {
     import('classes.file.ArticleFileManager');
     $articleFileManager = new ArticleFileManager($this->article->getId());
     $suppFileDao =& DAORegistry::getDAO('SuppFileDAO');
     $fileName = isset($fileName) ? $fileName : 'uploadSuppFile';
     if (isset($this->suppFile)) {
         parent::execute();
         // Upload file, if file selected.
         if ($articleFileManager->uploadedFileExists($fileName)) {
             $fileId = $this->suppFile->getFileId();
             if ($fileId != 0) {
                 $articleFileManager->uploadSuppFile($fileName, $fileId);
             } else {
                 $fileId = $articleFileManager->uploadSuppFile($fileName);
                 $this->suppFile->setFileId($fileId);
             }
             import('classes.search.ArticleSearchIndex');
             ArticleSearchIndex::updateFileIndex($this->article->getId(), ARTICLE_SEARCH_SUPPLEMENTARY_FILE, $fileId);
         }
         // Index metadata
         ArticleSearchIndex::indexSuppFileMetadata($this->suppFile);
         // Update existing supplementary file
         $this->setSuppFileData($this->suppFile);
         if ($this->getData('remoteURL')) {
             $this->suppFile->setRemoteURL($this->getData('remoteURL'));
         }
         $suppFileDao->updateSuppFile($this->suppFile);
     } else {
         // Upload file, if file selected.
         if ($articleFileManager->uploadedFileExists($fileName)) {
             $fileId = $articleFileManager->uploadSuppFile($fileName);
             import('classes.search.ArticleSearchIndex');
             ArticleSearchIndex::updateFileIndex($this->article->getId(), ARTICLE_SEARCH_SUPPLEMENTARY_FILE, $fileId);
         } else {
             $fileId = 0;
         }
         // Insert new supplementary file
         $this->suppFile = new SuppFile();
         $this->suppFile->setArticleId($this->article->getId());
         $this->suppFile->setFileId($fileId);
         if ($createRemote) {
             $this->suppFile->setRemoteURL(__('common.remoteURL'));
         }
         parent::execute();
         $this->setSuppFileData($this->suppFile);
         $suppFileDao->insertSuppFile($this->suppFile);
         $this->suppFileId = $this->suppFile->getId();
     }
     return $this->suppFileId;
 }

 /**
  * Save changes to the supplementary file.
  * @return int the supplementary file ID
  */
 function execute($fileName = null)
 {
     import('classes.file.ArticleFileManager');
     $articleFileManager = new ArticleFileManager($this->article->getArticleId());
     $suppFileDao =& DAORegistry::getDAO('SuppFileDAO');
     $fileName = isset($fileName) ? $fileName : 'uploadSuppFile';
     if (isset($this->suppFile)) {
         $suppFile =& $this->suppFile;
         // Upload file, if file selected.
         if ($articleFileManager->uploadedFileExists($fileName)) {
             $articleFileManager->uploadSuppFile($fileName, $suppFile->getFileId());
             import('classes.search.ArticleSearchIndex');
             ArticleSearchIndex::updateFileIndex($this->article->getArticleId(), ARTICLE_SEARCH_SUPPLEMENTARY_FILE, $suppFile->getFileId());
         }
         // Index metadata
         ArticleSearchIndex::indexSuppFileMetadata($suppFile);
         // Update existing supplementary file
         $this->setSuppFileData($suppFile);
         $suppFileDao->updateSuppFile($suppFile);
     } else {
         // Upload file, if file selected.
         if ($articleFileManager->uploadedFileExists($fileName)) {
             $fileId = $articleFileManager->uploadSuppFile($fileName);
             import('classes.search.ArticleSearchIndex');
             ArticleSearchIndex::updateFileIndex($this->article->getArticleId(), ARTICLE_SEARCH_SUPPLEMENTARY_FILE, $fileId);
             // Insert new supplementary file
             $suppFile = new SuppFile();
             $suppFile->setArticleId($this->article->getArticleId());
             $suppFile->setFileId($fileId);
             $this->setSuppFileData($suppFile);
             $suppFileDao->insertSuppFile($suppFile);
             $this->suppFileId = $suppFile->getId();
         } else {
             $fileId = 0;
         }
     }
     // Notifications
     import('lib.pkp.classes.notification.NotificationManager');
     $notificationManager = new NotificationManager();
     $journal =& Request::getJournal();
     $url = Request::url($journal->getPath(), 'sectionEditor', 'submission', array($this->article->getArticleId(), 'submissionReview'));
     $sectionEditorsDao =& DAORegistry::getDAO('SectionEditorsDAO');
     $sectionEditors =& $sectionEditorsDao->getEditorsBySectionId($journal->getId(), $this->article->getSectionId());
     foreach ($sectionEditors as $sectionEditor) {
         $notificationSectionEditors[] = array('id' => $sectionEditor->getId());
     }
     if ($suppFile->getData('type') == 'Raw Data File') {
         $message = 'notification.type.rawDataSubmitted';
     }
     if ($suppFile->getData('type') == 'Other Supplementary Research Output') {
         $message = 'notification.type.otherSuppResearchOutput';
     }
     if ($suppFile->getData('type') == 'Progress Report') {
         $message = 'notification.type.progressReport';
     }
     if ($suppFile->getData('type') == 'Completion Report') {
         $message = 'notification.type.completionReport';
     }
     if ($suppFile->getData('type') == 'Extension Request') {
         $message = 'notification.type.extensionRequest';
     }
     if ($this->getData('type') == "Supp File") {
         $message = 'notification.type.suppFile';
     }
     if (isset($message)) {
         foreach ($notificationSectionEditors as $userRole) {
             $notificationManager->createNotification($userRole['id'], $message, $this->article->getLocalizedTitle(), $url, 1, NOTIFICATION_TYPE_SUPP_FILE_MODIFIED);
         }
     }
     return $this->suppFileId;
 }

 /**
  * Save changes to the supplementary file.
  * @return int the supplementary file ID
  */
 function execute($fileName = null)
 {
     import('classes.file.ArticleFileManager');
     $articleFileManager = new ArticleFileManager($this->article->getArticleId());
     $suppFileDao =& DAORegistry::getDAO('SuppFileDAO');
     $fileName = 'uploadSuppFile';
     // Upload file, if file selected.
     if ($articleFileManager->uploadedFileExists($fileName)) {
         $fileId = $articleFileManager->uploadSuppFile($fileName);
         import('classes.search.ArticleSearchIndex');
         ArticleSearchIndex::updateFileIndex($this->article->getArticleId(), ARTICLE_SEARCH_SUPPLEMENTARY_FILE, $fileId);
         // Insert new supplementary file
         $suppFile = new SuppFile();
         $suppFile->setArticleId($this->article->getArticleId());
         $suppFile->setFileId($fileId);
         $this->setSuppFileData($suppFile);
         $suppFileDao->insertSuppFile($suppFile);
         $this->suppFileId = $suppFile->getId();
     } else {
         $fileId = 0;
     }
     // Save article settings (withdrawReason and withdrawComments)
     $articleDao =& DAORegistry::getDAO('ArticleDAO');
     $article =& $this->article;
     $article->setWithdrawReason($this->getData('withdrawReason'), null);
     if ($article->getWithdrawReason('en_US') == "2") {
         $article->setWithdrawReason($this->getData('otherReason'), null);
     }
     $article->setWithdrawComments($this->getData('withdrawComments'), null);
     // Save the article
     $articleDao->updateArticle($article);
     return $this->suppFileId;
 }