PHP ArticleSearchIndex::indexArticleMetadata方法代码示例

 /**
  * Save changes to article.
  */
 function execute()
 {
     $articleDao =& DAORegistry::getDAO('ArticleDAO');
     $signoffDao =& DAORegistry::getDAO('SignoffDAO');
     $journal = Request::getJournal();
     $user = Request::getUser();
     // Update article
     $article =& $this->article;
     if ($this->getData('commentsToEditor') != '') {
         $article->setCommentsToEditor($this->getData('commentsToEditor'));
     }
     $article->setDateSubmitted(Core::getCurrentDate());
     $article->setSubmissionProgress(0);
     $article->stampStatusModified();
     $articleDao->updateArticle($article);
     // Designate this as the review version by default.
     $authorSubmissionDao =& DAORegistry::getDAO('AuthorSubmissionDAO');
     $authorSubmission =& $authorSubmissionDao->getAuthorSubmission($article->getId());
     AuthorAction::designateReviewVersion($authorSubmission, true);
     unset($authorSubmission);
     $copyeditInitialSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_INITIAL', ASSOC_TYPE_ARTICLE, $article->getId());
     $copyeditAuthorSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_AUTHOR', ASSOC_TYPE_ARTICLE, $article->getId());
     $copyeditFinalSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_FINAL', ASSOC_TYPE_ARTICLE, $article->getId());
     $copyeditInitialSignoff->setUserId(0);
     $copyeditAuthorSignoff->setUserId($user->getId());
     $copyeditFinalSignoff->setUserId(0);
     $signoffDao->updateObject($copyeditInitialSignoff);
     $signoffDao->updateObject($copyeditAuthorSignoff);
     $signoffDao->updateObject($copyeditFinalSignoff);
     $layoutSignoff = $signoffDao->build('SIGNOFF_LAYOUT', ASSOC_TYPE_ARTICLE, $article->getId());
     $layoutSignoff->setUserId(0);
     $signoffDao->updateObject($layoutSignoff);
     $proofAuthorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_AUTHOR', ASSOC_TYPE_ARTICLE, $article->getId());
     $proofProofreaderSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_PROOFREADER', ASSOC_TYPE_ARTICLE, $article->getId());
     $proofLayoutEditorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_LAYOUT', ASSOC_TYPE_ARTICLE, $article->getId());
     $proofAuthorSignoff->setUserId($user->getId());
     $proofProofreaderSignoff->setUserId(0);
     $proofLayoutEditorSignoff->setUserId(0);
     $signoffDao->updateObject($proofAuthorSignoff);
     $signoffDao->updateObject($proofProofreaderSignoff);
     $signoffDao->updateObject($proofLayoutEditorSignoff);
     $sectionEditors = $this->assignEditors($article);
     $user =& Request::getUser();
     // Update search index
     import('classes.search.ArticleSearchIndex');
     ArticleSearchIndex::indexArticleMetadata($article);
     ArticleSearchIndex::indexArticleFiles($article);
     // Send author notification email
     import('classes.mail.ArticleMailTemplate');
     $mail = new ArticleMailTemplate($article, 'SUBMISSION_ACK', null, null, null, false);
     $mail->setFrom($journal->getSetting('contactEmail'), $journal->getSetting('contactName'));
     if ($mail->isEnabled()) {
         $mail->addRecipient($user->getEmail(), $user->getFullName());
         // If necessary, BCC the acknowledgement to someone.
         if ($journal->getSetting('copySubmissionAckPrimaryContact')) {
             $mail->addBcc($journal->getSetting('contactEmail'), $journal->getSetting('contactName'));
         }
         if ($journal->getSetting('copySubmissionAckSpecified')) {
             $copyAddress = $journal->getSetting('copySubmissionAckAddress');
             if (!empty($copyAddress)) {
                 $mail->addBcc($copyAddress);
             }
         }
         // Also BCC automatically assigned section editors
         foreach ($sectionEditors as $sectionEditorEntry) {
             $sectionEditor =& $sectionEditorEntry['user'];
             $mail->addBcc($sectionEditor->getEmail(), $sectionEditor->getFullName());
             unset($sectionEditor);
         }
         $mail->assignParams(array('authorName' => $user->getFullName(), 'authorUsername' => $user->getUsername(), 'editorialContactSignature' => $journal->getSetting('contactName') . "\n" . $journal->getLocalizedTitle(), 'submissionUrl' => Request::url(null, 'author', 'submission', $article->getId())));
         $mail->send();
     }
     import('classes.article.log.ArticleLog');
     import('classes.article.log.ArticleEventLogEntry');
     ArticleLog::logEvent($this->articleId, ARTICLE_LOG_ARTICLE_SUBMIT, ARTICLE_LOG_TYPE_AUTHOR, $user->getId(), 'log.author.submitted', array('submissionId' => $article->getId(), 'authorName' => $user->getFullName()));
     return $this->articleId;
 }

//.........这里部分代码省略.........
         }
     }
     for ($index = 0; $node = $articleNode->getChildByName('id', $index); $index++) {
         switch ($node->getAttribute('type')) {
             case 'doi':
                 $article->setStoredDOI($node->getValue());
                 break;
         }
     }
     $articleDao->insertArticle($article);
     $dependentItems[] = array('article', $article);
     // Create submission mangement records
     $signoffDao =& DAORegistry::getDAO('SignoffDAO');
     $initialCopyeditSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_INITIAL', ASSOC_TYPE_ARTICLE, $article->getId());
     $initialCopyeditSignoff->setUserId(0);
     $signoffDao->updateObject($initialCopyeditSignoff);
     $authorCopyeditSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_AUTHOR', ASSOC_TYPE_ARTICLE, $article->getId());
     $authorCopyeditSignoff->setUserId(0);
     $signoffDao->updateObject($authorCopyeditSignoff);
     $finalCopyeditSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_FINAL', ASSOC_TYPE_ARTICLE, $article->getId());
     $finalCopyeditSignoff->setUserId(0);
     $signoffDao->updateObject($finalCopyeditSignoff);
     $layoutSignoff = $signoffDao->build('SIGNOFF_LAYOUT', ASSOC_TYPE_ARTICLE, $article->getId());
     $layoutSignoff->setUserId(0);
     $signoffDao->updateObject($layoutSignoff);
     $authorProofSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_AUTHOR', ASSOC_TYPE_ARTICLE, $article->getId());
     $authorProofSignoff->setUserId(0);
     $signoffDao->updateObject($authorProofSignoff);
     $proofreaderProofSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_PROOFREADER', ASSOC_TYPE_ARTICLE, $article->getId());
     $proofreaderProofSignoff->setUserId(0);
     $signoffDao->updateObject($proofreaderProofSignoff);
     $layoutProofSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_LAYOUT', ASSOC_TYPE_ARTICLE, $article->getId());
     $layoutProofSignoff->setUserId(0);
     $signoffDao->updateObject($layoutProofSignoff);
     // Log the import in the article event log.
     import('classes.article.log.ArticleLog');
     import('classes.article.log.ArticleEventLogEntry');
     ArticleLog::logEvent($article->getId(), ARTICLE_LOG_ARTICLE_IMPORT, ARTICLE_LOG_TYPE_DEFAULT, 0, 'log.imported', array('userName' => $user->getFullName(), 'articleId' => $article->getId()));
     // Insert published article entry.
     $publishedArticle = new PublishedArticle();
     $publishedArticle->setArticleId($article->getId());
     $publishedArticle->setIssueId($issue->getId());
     if ($node = $articleNode->getChildByName('date_published')) {
         $publishedDate = strtotime($node->getValue());
         if ($publishedDate === -1) {
             $errors[] = array('plugins.importexport.native.import.error.invalidDate', array('value' => $node->getValue()));
             return false;
         } else {
             $publishedArticle->setDatePublished($publishedDate);
         }
     }
     $node = $articleNode->getChildByName('open_access');
     $publishedArticle->setAccessStatus($node ? ARTICLE_ACCESS_OPEN : ARTICLE_ACCESS_ISSUE_DEFAULT);
     $publishedArticle->setSeq(REALLY_BIG_NUMBER);
     $publishedArticle->setViews(0);
     $publishedArticle->setPublicArticleId($articleNode->getAttribute('public_id'));
     $publishedArticle->setPubId($publishedArticleDao->insertPublishedArticle($publishedArticle));
     $publishedArticleDao->resequencePublishedArticles($section->getId(), $issue->getId());
     /* --- Galleys (html or otherwise handled simultaneously) --- */
     import('classes.file.ArticleFileManager');
     $articleFileManager = new ArticleFileManager($article->getId());
     /* --- Handle galleys --- */
     $hasErrors = false;
     $galleyCount = 0;
     for ($index = 0; $index < count($articleNode->children); $index++) {
         $node = $articleNode->children[$index];
         if ($node->getName() == 'htmlgalley') {
             $isHtml = true;
         } elseif ($node->getName() == 'galley') {
             $isHtml = false;
         } else {
             continue;
         }
         if (!NativeImportDom::handleGalleyNode($journal, $node, $issue, $section, $article, $galleyErrors, $isCommandLine, $isHtml, $galleyCount, $articleFileManager)) {
             $errors = array_merge($errors, $galleyErrors);
             $hasErrors = true;
         }
         $galleyCount++;
         unset($node);
     }
     if ($hasErrors) {
         return false;
     }
     /* --- Handle supplemental files --- */
     $hasErrors = false;
     for ($index = 0; $node = $articleNode->getChildByName('supplemental_file', $index); $index++) {
         if (!NativeImportDom::handleSuppFileNode($journal, $node, $issue, $section, $article, $suppFileErrors, $isCommandLine, $articleFileManager)) {
             $errors = array_merge($errors, $suppFileErrors);
             $hasErrors = true;
         }
     }
     if ($hasErrors) {
         return false;
     }
     // Index the inserted article.
     import('classes.search.ArticleSearchIndex');
     ArticleSearchIndex::indexArticleMetadata($article);
     ArticleSearchIndex::indexArticleFiles($article);
     return true;
 }

//.........这里部分代码省略.........
     $article =& $this->article;
     $article->setTitle($this->getData('title'), null);
     // Localized
     $section =& $sectionDao->getSection($article->getSectionId());
     if (!$section->getAbstractsDisabled()) {
         $article->setAbstract($this->getData('abstract'), null);
         // Localized
     }
     import('file.PublicFileManager');
     $publicFileManager =& new PublicFileManager();
     if ($publicFileManager->uploadedFileExists('coverPage')) {
         $journal = Request::getJournal();
         $originalFileName = $publicFileManager->getUploadedFileName('coverPage');
         $newFileName = 'cover_article_' . $this->getData('articleId') . '_' . $this->getFormLocale() . '.' . $publicFileManager->getExtension($originalFileName);
         $publicFileManager->uploadJournalFile($journal->getJournalId(), 'coverPage', $newFileName);
         $article->setOriginalFileName($publicFileManager->truncateFileName($originalFileName, 127), $this->getFormLocale());
         $article->setFileName($newFileName, $this->getFormLocale());
         // Store the image dimensions.
         list($width, $height) = getimagesize($publicFileManager->getJournalFilesPath($journal->getJournalId()) . '/' . $newFileName);
         $article->setWidth($width, $this->getFormLocale());
         $article->setHeight($height, $this->getFormLocale());
     }
     $article->setCoverPageAltText($this->getData('coverPageAltText'), null);
     // Localized
     $showCoverPage = array_map(create_function('$arrayElement', 'return (int)$arrayElement;'), (array) $this->getData('showCoverPage'));
     foreach (array_keys($this->getData('coverPageAltText')) as $locale) {
         if (!array_key_exists($locale, $showCoverPage)) {
             $showCoverPage[$locale] = 0;
         }
     }
     $article->setShowCoverPage($showCoverPage, null);
     // Localized
     $article->setDiscipline($this->getData('discipline'), null);
     // Localized
     $article->setSubjectClass($this->getData('subjectClass'), null);
     // Localized
     $article->setSubject($this->getData('subject'), null);
     // Localized
     $article->setCoverageGeo($this->getData('coverageGeo'), null);
     // Localized
     $article->setCoverageChron($this->getData('coverageChron'), null);
     // Localized
     $article->setCoverageSample($this->getData('coverageSample'), null);
     // Localized
     $article->setType($this->getData('type'), null);
     // Localized
     $article->setLanguage($this->getData('language'));
     // Localized
     $article->setSponsor($this->getData('sponsor'), null);
     // Localized
     $article->setHideAuthor($this->getData('hideAuthor') ? $this->getData('hideAuthor') : 0);
     // Update authors
     $authors = $this->getData('authors');
     for ($i = 0, $count = count($authors); $i < $count; $i++) {
         if ($authors[$i]['authorId'] > 0) {
             // Update an existing author
             $author =& $article->getAuthor($authors[$i]['authorId']);
             $isExistingAuthor = true;
         } else {
             // Create a new author
             $author =& new Author();
             $isExistingAuthor = false;
         }
         if ($author != null) {
             $author->setFirstName($authors[$i]['firstName'], null);
             // Opatan Inc. : Localized author firstName
             $author->setMiddleName($authors[$i]['middleName'], null);
             // Opatan Inc. : Localized author middleName
             $author->setLastName($authors[$i]['lastName'], null);
             // Opatan Inc. : Localized author lastName
             $author->setAffiliation($authors[$i]['affiliation'], null);
             // Opatan Inc. : Localized author affiliation
             $author->setCountry($authors[$i]['country']);
             $author->setEmail($authors[$i]['email']);
             $author->setUrl($authors[$i]['url']);
             if (array_key_exists('competingInterests', $authors[$i])) {
                 $author->setCompetingInterests($authors[$i]['competingInterests'], null);
                 // Localized
             }
             $author->setBiography($authors[$i]['biography'], null);
             // Localized
             $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
             $author->setSequence($authors[$i]['seq']);
             if ($isExistingAuthor == false) {
                 $article->addAuthor($author);
             }
         }
     }
     // Remove deleted authors
     $deletedAuthors = explode(':', $this->getData('deletedAuthors'));
     for ($i = 0, $count = count($deletedAuthors); $i < $count; $i++) {
         $article->removeAuthor($deletedAuthors[$i]);
     }
     // Save the article
     $articleDao->updateArticle($article);
     // Update search index
     import('search.ArticleSearchIndex');
     ArticleSearchIndex::indexArticleMetadata($article);
     return $article->getArticleId();
 }

 /**
  * Save changes to article.
  */
 function execute()
 {
     $articleDao =& DAORegistry::getDAO('ArticleDAO');
     $journal = Request::getJournal();
     // Update article
     $article =& $this->article;
     if ($this->getData('commentsToEditor') != '') {
         $article->setCommentsToEditor($this->getData('commentsToEditor'));
     }
     $article->setDateSubmitted(Core::getCurrentDate());
     $article->setSubmissionProgress(0);
     $article->stampStatusModified();
     $articleDao->updateArticle($article);
     // Designate this as the review version by default.
     $authorSubmissionDao =& DAORegistry::getDAO('AuthorSubmissionDAO');
     $authorSubmission =& $authorSubmissionDao->getAuthorSubmission($article->getArticleId());
     AuthorAction::designateReviewVersion($authorSubmission, true);
     unset($authorSubmission);
     // Create additional submission mangement records
     $copyeditorSubmissionDao =& DAORegistry::getDAO('CopyeditorSubmissionDAO');
     $copyeditorSubmission =& new CopyeditorSubmission();
     $copyeditorSubmission->setArticleId($article->getArticleId());
     $copyeditorSubmission->setCopyeditorId(0);
     $copyeditorSubmissionDao->insertCopyeditorSubmission($copyeditorSubmission);
     $layoutDao =& DAORegistry::getDAO('LayoutAssignmentDAO');
     $layoutAssignment =& new LayoutAssignment();
     $layoutAssignment->setArticleId($article->getArticleId());
     $layoutAssignment->setEditorId(0);
     $layoutDao->insertLayoutAssignment($layoutAssignment);
     $proofAssignmentDao =& DAORegistry::getDAO('ProofAssignmentDAO');
     $proofAssignment =& new ProofAssignment();
     $proofAssignment->setArticleId($article->getArticleId());
     $proofAssignment->setProofreaderId(0);
     $proofAssignmentDao->insertProofAssignment($proofAssignment);
     $sectionEditors = $this->assignEditors($article);
     $user =& Request::getUser();
     // Update search index
     import('search.ArticleSearchIndex');
     ArticleSearchIndex::indexArticleMetadata($article);
     ArticleSearchIndex::indexArticleFiles($article);
     // Send author notification email
     import('mail.ArticleMailTemplate');
     $mail =& new ArticleMailTemplate($article, 'SUBMISSION_ACK');
     $mail->setFrom($journal->getSetting('contactEmail'), $journal->getSetting('contactName'));
     if ($mail->isEnabled()) {
         $mail->addRecipient($user->getEmail(), $user->getFullName());
         // If necessary, BCC the acknowledgement to someone.
         if ($journal->getSetting('copySubmissionAckPrimaryContact')) {
             $mail->addBcc($journal->getSetting('contactEmail'), $journal->getSetting('contactName'));
         }
         if ($journal->getSetting('copySubmissionAckSpecified')) {
             $copyAddress = $journal->getSetting('copySubmissionAckAddress');
             if (!empty($copyAddress)) {
                 $mail->addBcc($copyAddress);
             }
         }
         // Also BCC automatically assigned section editors
         foreach ($sectionEditors as $sectionEditorEntry) {
             $sectionEditor =& $sectionEditorEntry['user'];
             $mail->addBcc($sectionEditor->getEmail(), $sectionEditor->getFullName());
             unset($sectionEditor);
         }
         $mail->assignParams(array('authorName' => $user->getFullName(), 'authorUsername' => $user->getUsername(), 'editorialContactSignature' => $journal->getSetting('contactName') . "\n" . $journal->getJournalTitle(), 'submissionUrl' => Request::url(null, 'author', 'submission', $article->getArticleId())));
         $mail->send();
     }
     import('article.log.ArticleLog');
     import('article.log.ArticleEventLogEntry');
     ArticleLog::logEvent($this->articleId, ARTICLE_LOG_ARTICLE_SUBMIT, ARTICLE_LOG_TYPE_AUTHOR, $user->getUserId(), 'log.author.submitted', array('submissionId' => $article->getArticleId(), 'authorName' => $user->getFullName()));
     return $this->articleId;
 }

//.........这里部分代码省略.........
     foreach (array_keys($tempFileIds) as $locale) {
         $temporaryFile = $temporaryFileManager->getFile($tempFileIds[$locale], $user->getId());
         $fileId = null;
         if ($temporaryFile) {
             $fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, ARTICLE_FILE_SUBMISSION);
             $fileType = $temporaryFile->getFileType();
             if (strstr($fileType, 'html')) {
                 import('classes.article.ArticleHTMLGalley');
                 $galley = new ArticleHTMLGalley();
             } else {
                 import('classes.article.ArticleGalley');
                 $galley = new ArticleGalley();
             }
             $galley->setArticleId($articleId);
             $galley->setFileId($fileId);
             $galley->setLocale($locale);
             if ($galley->isHTMLGalley()) {
                 $galley->setLabel('HTML');
             } else {
                 if (strstr($fileType, 'pdf')) {
                     $galley->setLabel('PDF');
                 } else {
                     if (strstr($fileType, 'postscript')) {
                         $galley->setLabel('Postscript');
                     } else {
                         if (strstr($fileType, 'xml')) {
                             $galley->setLabel('XML');
                         } else {
                             $galley->setLabel(__('common.untitled'));
                         }
                     }
                 }
             }
             $galleyDao =& DAORegistry::getDAO('ArticleGalleyDAO');
             $galleyDao->insertGalley($galley);
         }
         if ($locale == $journal->getPrimaryLocale()) {
             $article->setSubmissionFileId($fileId);
             $article->SetReviewFileId($fileId);
         }
         // Update file search index
         import('classes.search.ArticleSearchIndex');
         if (isset($galley)) {
             ArticleSearchIndex::updateFileIndex($galley->getArticleId(), ARTICLE_SEARCH_GALLEY_FILE, $galley->getFileId());
         }
     }
     // Designate this as the review version by default.
     $authorSubmissionDao =& DAORegistry::getDAO('AuthorSubmissionDAO');
     $authorSubmission =& $authorSubmissionDao->getAuthorSubmission($articleId);
     import('classes.submission.author.AuthorAction');
     AuthorAction::designateReviewVersion($authorSubmission, true);
     // Accept the submission
     $sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($articleId);
     $articleFileManager = new ArticleFileManager($articleId);
     $sectionEditorSubmission->setReviewFile($articleFileManager->getFile($article->getSubmissionFileId()));
     import('classes.submission.sectionEditor.SectionEditorAction');
     SectionEditorAction::recordDecision($sectionEditorSubmission, SUBMISSION_EDITOR_DECISION_ACCEPT);
     // Create signoff infrastructure
     $copyeditInitialSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_INITIAL', ASSOC_TYPE_ARTICLE, $articleId);
     $copyeditAuthorSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId);
     $copyeditFinalSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_FINAL', ASSOC_TYPE_ARTICLE, $articleId);
     $copyeditInitialSignoff->setUserId(0);
     $copyeditAuthorSignoff->setUserId($user->getId());
     $copyeditFinalSignoff->setUserId(0);
     $signoffDao->updateObject($copyeditInitialSignoff);
     $signoffDao->updateObject($copyeditAuthorSignoff);
     $signoffDao->updateObject($copyeditFinalSignoff);
     $layoutSignoff = $signoffDao->build('SIGNOFF_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId);
     $layoutSignoff->setUserId(0);
     $signoffDao->updateObject($layoutSignoff);
     $proofAuthorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId);
     $proofProofreaderSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_PROOFREADER', ASSOC_TYPE_ARTICLE, $articleId);
     $proofLayoutEditorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId);
     $proofAuthorSignoff->setUserId($user->getId());
     $proofProofreaderSignoff->setUserId(0);
     $proofLayoutEditorSignoff->setUserId(0);
     $signoffDao->updateObject($proofAuthorSignoff);
     $signoffDao->updateObject($proofProofreaderSignoff);
     $signoffDao->updateObject($proofLayoutEditorSignoff);
     import('classes.author.form.submit.AuthorSubmitForm');
     AuthorSubmitForm::assignEditors($article);
     $articleDao->updateArticle($article);
     // Add to end of editing queue
     import('classes.submission.editor.EditorAction');
     if (isset($galley)) {
         EditorAction::expediteSubmission($article);
     }
     if ($this->getData('destination') == "issue") {
         // Add to an existing issue
         $issueId = $this->getData('issueId');
         $this->scheduleForPublication($articleId, $issueId);
     }
     // Index article.
     import('classes.search.ArticleSearchIndex');
     ArticleSearchIndex::indexArticleMetadata($article);
     // Import the references list.
     $citationDao =& DAORegistry::getDAO('CitationDAO');
     $rawCitationList = $article->getCitations();
     $citationDao->importCitations($request, ASSOC_TYPE_ARTICLE, $articleId, $rawCitationList);
 }

 /**
  * Rebuild the search index for all journals.
  */
 function rebuildIndex($log = false)
 {
     // Clear index
     if ($log) {
         echo 'Clearing index ... ';
     }
     $searchDao =& DAORegistry::getDAO('ArticleSearchDAO');
     // FIXME Abstract into ArticleSearchDAO?
     $searchDao->update('DELETE FROM article_search_object_keywords');
     $searchDao->update('DELETE FROM article_search_objects');
     $searchDao->update('DELETE FROM article_search_keyword_list');
     $searchDao->setCacheDir(Config::getVar('files', 'files_dir') . '/_db');
     $searchDao->_dataSource->CacheFlush();
     if ($log) {
         echo "done\n";
     }
     // Build index
     $journalDao =& DAORegistry::getDAO('JournalDAO');
     $articleDao =& DAORegistry::getDAO('ArticleDAO');
     $journals =& $journalDao->getJournals();
     while (!$journals->eof()) {
         $journal =& $journals->next();
         $numIndexed = 0;
         if ($log) {
             echo "Indexing \"", $journal->getLocalizedTitle(), "\" ... ";
         }
         $articles =& $articleDao->getArticlesByJournalId($journal->getId());
         while (!$articles->eof()) {
             $article =& $articles->next();
             if ($article->getDateSubmitted()) {
                 ArticleSearchIndex::indexArticleMetadata($article);
                 ArticleSearchIndex::indexArticleFiles($article);
                 $numIndexed++;
             }
             unset($article);
         }
         if ($log) {
             echo $numIndexed, " articles indexed\n";
         }
         unset($journal);
     }
 }

//.........这里部分代码省略.........
         }
     }
     $article->setHideCoverPageToc($hideCoverPageToc, null);
     // Localized
     $hideCoverPageAbstract = array_map(create_function('$arrayElement', 'return (int)$arrayElement;'), (array) $this->getData('hideCoverPageAbstract'));
     foreach (array_keys($this->getData('coverPageAltText')) as $locale) {
         if (!array_key_exists($locale, $hideCoverPageAbstract)) {
             $hideCoverPageAbstract[$locale] = 0;
         }
     }
     $article->setHideCoverPageAbstract($hideCoverPageAbstract, null);
     // Localized
     $article->setDiscipline($this->getData('discipline'), null);
     // Localized
     $article->setSubjectClass($this->getData('subjectClass'), null);
     // Localized
     $article->setSubject($this->getData('subject'), null);
     // Localized
     $article->setCoverageGeo($this->getData('coverageGeo'), null);
     // Localized
     $article->setCoverageChron($this->getData('coverageChron'), null);
     // Localized
     $article->setCoverageSample($this->getData('coverageSample'), null);
     // Localized
     $article->setType($this->getData('type'), null);
     // Localized
     $article->setLanguage($this->getData('language'));
     // Localized
     $article->setSponsor($this->getData('sponsor'), null);
     // Localized
     $article->setCitations($this->getData('citations'));
     if ($this->isEditor) {
         $article->setHideAuthor($this->getData('hideAuthor') ? $this->getData('hideAuthor') : 0);
     }
     // consider the additional field names from the public identifer plugins
     import('classes.plugins.PubIdPluginHelper');
     $pubIdPluginHelper = new PubIdPluginHelper();
     $pubIdPluginHelper->execute($this, $article);
     // Update authors
     $authors = $this->getData('authors');
     for ($i = 0, $count = count($authors); $i < $count; $i++) {
         if ($authors[$i]['authorId'] > 0) {
             // Update an existing author
             $author =& $authorDao->getAuthor($authors[$i]['authorId'], $article->getId());
             $isExistingAuthor = true;
         } else {
             // Create a new author
             if (checkPhpVersion('5.0.0')) {
                 // *5488* PHP4 Requires explicit instantiation-by-reference
                 $author = new Author();
             } else {
                 $author =& new Author();
             }
             $isExistingAuthor = false;
         }
         if ($author != null) {
             $author->setSubmissionId($article->getId());
             $author->setFirstName($authors[$i]['firstName']);
             $author->setMiddleName($authors[$i]['middleName']);
             $author->setLastName($authors[$i]['lastName']);
             $author->setAffiliation($authors[$i]['affiliation'], null);
             // Localized
             $author->setCountry($authors[$i]['country']);
             $author->setEmail($authors[$i]['email']);
             $author->setUrl($authors[$i]['url']);
             if (array_key_exists('competingInterests', $authors[$i])) {
                 $author->setCompetingInterests($authors[$i]['competingInterests'], null);
                 // Localized
             }
             $author->setBiography($authors[$i]['biography'], null);
             // Localized
             $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
             $author->setSequence($authors[$i]['seq']);
             HookRegistry::call('Submission::Form::MetadataForm::Execute', array(&$author, &$authors[$i]));
             if ($isExistingAuthor) {
                 $authorDao->updateAuthor($author);
             } else {
                 $authorDao->insertAuthor($author);
             }
             unset($author);
         }
     }
     // Remove deleted authors
     $deletedAuthors = explode(':', $this->getData('deletedAuthors'));
     for ($i = 0, $count = count($deletedAuthors); $i < $count; $i++) {
         $authorDao->deleteAuthorById($deletedAuthors[$i], $article->getId());
     }
     parent::execute();
     // Save the article
     $articleDao->updateArticle($article);
     // Update search index
     import('classes.search.ArticleSearchIndex');
     ArticleSearchIndex::indexArticleMetadata($article);
     // Update references list if it changed.
     $rawCitationList = $article->getCitations();
     if ($previousRawCitationList != $rawCitationList) {
         $citationDao->importCitations($request, ASSOC_TYPE_ARTICLE, $article->getId(), $rawCitationList);
     }
     return $article->getId();
 }

//.........这里部分代码省略.........
         $temporaryFile = $temporaryFileManager->getFile($tempFileIds[$locale], $user->getId());
         $fileId = null;
         if ($temporaryFile) {
             $this->deleteOldFile("submission/original", $articleId);
             $this->deleteOldFile("submission/copyedit", $articleId);
             $tempFileCheck = TRUE;
             $fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, ARTICLE_FILE_SUBMISSION);
             $fileType = $temporaryFile->getFileType();
             $this->setGalley($articleId, $fileId, $locale, $fileType);
             // $galley =& $this->setGalley($articleId, $fileId, $locale, $fileType);
         }
         if ($tempFileCheck == TRUE) {
             if ($locale == $journal->getPrimaryLocale()) {
                 $article->setSubmissionFileId($fileId);
                 $article->SetReviewFileId($fileId);
             }
             // Update file search index
             import('classes.search.ArticleSearchIndex');
             if (isset($galley)) {
                 ArticleSearchIndex::updateFileIndex($galley->getArticleId(), ARTICLE_SEARCH_GALLEY_FILE, $galley->getFileId());
             }
         }
     }
     //Check whether the user gave a handle and create handleSupplFile in case
     $supplHandle = $this->getData('supplHandle');
     $handleSuppFileId = null;
     foreach (array_keys($supplHandle) as $locale) {
         if (!empty($supplHandle[$locale])) {
             $this->deleteOldFile("supp", $articleId);
             $handleSuppFileId = $this->createHandleTXTFile($supplHandle[$locale], $articleId, 'supplementary');
             $handleSupplPDFFileID = $this->createHandlePDF($submissionHandle[$locale], $articleId, 'supplementary');
         }
     }
     //Add uploaded Supplementary file
     $tempSupplFileIds = $this->getData('tempSupplFileId');
     foreach (array_keys($tempSupplFileIds) as $locale) {
         $temporaryFile = $temporaryFileManager->getFile($tempSupplFileIds[$locale], $user->getId());
         $fileId = null;
         if ($temporaryFile) {
             $this->deleteOldFile("supp", $articleId);
             $fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, ARTICLE_FILE_SUPP);
             $fileType = $temporaryFile->getFileType();
         }
     }
     // Designate this as the review version by default.
     /*$authorSubmissionDao =& DAORegistry::getDAO('AuthorSubmissionDAO');
     		$authorSubmission =& $authorSubmissionDao->getAuthorSubmission($articleId);
     		import('classes.submission.author.AuthorAction');
     		AuthorAction::designateReviewVersion($authorSubmission, true);
     */
     // Accept the submission
     /*$sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($articleId);
     		$articleFileManager = new ArticleFileManager($articleId);
     		$sectionEditorSubmission->setReviewFile($articleFileManager->getFile($article->getSubmissionFileId()));
     		import('classes.submission.sectionEditor.SectionEditorAction');
     		SectionEditorAction::recordDecision($sectionEditorSubmission, SUBMISSION_EDITOR_DECISION_ACCEPT);
     */
     // Create signoff infrastructure
     $copyeditInitialSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_INITIAL', ASSOC_TYPE_ARTICLE, $articleId);
     $copyeditAuthorSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId);
     $copyeditFinalSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_FINAL', ASSOC_TYPE_ARTICLE, $articleId);
     $copyeditInitialSignoff->setUserId(0);
     $copyeditAuthorSignoff->setUserId($user->getId());
     $copyeditFinalSignoff->setUserId(0);
     $signoffDao->updateObject($copyeditInitialSignoff);
     $signoffDao->updateObject($copyeditAuthorSignoff);
     $signoffDao->updateObject($copyeditFinalSignoff);
     $layoutSignoff = $signoffDao->build('SIGNOFF_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId);
     $layoutSignoff->setUserId(0);
     $signoffDao->updateObject($layoutSignoff);
     $proofAuthorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId);
     $proofProofreaderSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_PROOFREADER', ASSOC_TYPE_ARTICLE, $articleId);
     $proofLayoutEditorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId);
     $proofAuthorSignoff->setUserId($user->getId());
     $proofProofreaderSignoff->setUserId(0);
     $proofLayoutEditorSignoff->setUserId(0);
     $signoffDao->updateObject($proofAuthorSignoff);
     $signoffDao->updateObject($proofProofreaderSignoff);
     $signoffDao->updateObject($proofLayoutEditorSignoff);
     import('classes.author.form.submit.AuthorSubmitForm');
     AuthorSubmitForm::assignEditors($article);
     $articleDao->updateArticle($article);
     // Add to end of editing queue
     import('classes.submission.editor.EditorAction');
     if (isset($galley)) {
         EditorAction::expediteSubmission($article);
     }
     // As the article already has an issue, just get it from database
     $issueDao =& DAORegistry::getDAO('IssueDAO');
     $issue =& $issueDao->getIssueByArticleId($this->editArticleID);
     $issueId = $issue->getIssueId();
     //$this->scheduleForPublication($articleId, $issueId);
     // Index article.
     import('classes.search.ArticleSearchIndex');
     ArticleSearchIndex::indexArticleMetadata($article);
     // Import the references list.
     $citationDao =& DAORegistry::getDAO('CitationDAO');
     $rawCitationList = $article->getCitations();
     $citationDao->importCitations($request, ASSOC_TYPE_ARTICLE, $articleId, $rawCitationList);
 }

 /**
  * Save changes to article.
  */
 function execute()
 {
     $articleDao =& DAORegistry::getDAO('ArticleDAO');
     $signoffDao =& DAORegistry::getDAO('SignoffDAO');
     $sectionDao =& DAORegistry::getDAO('SectionDAO');
     $ercReviewersDao =& DAORegistry::getDAO('ErcReviewersDAO');
     $institutionDao =& DAORegistry::getDAO('InstitutionDAO');
     $journal = Request::getJournal();
     $user = Request::getUser();
     // Update article
     $article =& $this->article;
     if ($article->getDateSubmitted() == null) {
         $year = substr(Core::getCurrentDate(), 0, 4);
         $countyear = $articleDao->getSubmissionsForYearCount($year) + 1;
         $pSponsor = $article->getArticlePrimarySponsor();
         $institution = $institutionDao->getInstitutionById($pSponsor->getInstitutionId());
         $article->setProposalId($year . '-' . $countyear . '-' . $institution->getInstitutionAcronym());
     }
     if ($this->getData('commentsToEditor') != '') {
         $article->setCommentsToEditor($this->getData('commentsToEditor'));
     }
     $article->setDateSubmitted(Core::getCurrentDate());
     $article->setSubmissionProgress(0);
     $article->stampStatusModified();
     $articleDao->updateArticle($article);
     // Designate this as the review version by default.
     $authorSubmissionDao =& DAORegistry::getDAO('AuthorSubmissionDAO');
     $authorSubmission =& $authorSubmissionDao->getAuthorSubmission($article->getId());
     AuthorAction::designateReviewVersion($authorSubmission, true);
     unset($authorSubmission);
     $copyeditInitialSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_INITIAL', ASSOC_TYPE_ARTICLE, $article->getId());
     $copyeditAuthorSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_AUTHOR', ASSOC_TYPE_ARTICLE, $article->getId());
     $copyeditFinalSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_FINAL', ASSOC_TYPE_ARTICLE, $article->getId());
     $copyeditInitialSignoff->setUserId(0);
     $copyeditAuthorSignoff->setUserId($user->getId());
     $copyeditFinalSignoff->setUserId(0);
     $signoffDao->updateObject($copyeditInitialSignoff);
     $signoffDao->updateObject($copyeditAuthorSignoff);
     $signoffDao->updateObject($copyeditFinalSignoff);
     $layoutSignoff = $signoffDao->build('SIGNOFF_LAYOUT', ASSOC_TYPE_ARTICLE, $article->getId());
     $layoutSignoff->setUserId(0);
     $signoffDao->updateObject($layoutSignoff);
     $proofAuthorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_AUTHOR', ASSOC_TYPE_ARTICLE, $article->getId());
     $proofProofreaderSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_PROOFREADER', ASSOC_TYPE_ARTICLE, $article->getId());
     $proofLayoutEditorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_LAYOUT', ASSOC_TYPE_ARTICLE, $article->getId());
     $proofAuthorSignoff->setUserId($user->getId());
     $proofProofreaderSignoff->setUserId(0);
     $proofLayoutEditorSignoff->setUserId(0);
     $signoffDao->updateObject($proofAuthorSignoff);
     $signoffDao->updateObject($proofProofreaderSignoff);
     $signoffDao->updateObject($proofLayoutEditorSignoff);
     $sectionEditorsDao =& DAORegistry::getDAO('SectionEditorsDAO');
     $sectionEditors =& $sectionEditorsDao->getEditorsBySectionId($journal->getId(), $article->getSectionId());
     $user =& Request::getUser();
     // Update search index
     import('classes.search.ArticleSearchIndex');
     ArticleSearchIndex::indexArticleMetadata($article);
     ArticleSearchIndex::indexArticleFiles($article);
     // Send author notification email
     import('classes.mail.ArticleMailTemplate');
     $mail = new ArticleMailTemplate($article, null, 'SUBMISSION_ACK', null, null, null, false);
     foreach ($sectionEditors as $sectionEditor) {
         // If one of the secretary is the chair of the committee, send from the chair, if not, take the last secretary in the array
         $from = $mail->getFrom();
         if ($ercReviewersDao->isErcReviewer($journal->getId(), $sectionEditor->getId(), REVIEWER_CHAIR)) {
             $mail->setFrom($sectionEditor->getEmail(), $sectionEditor->getFullName());
         } elseif ($from['email'] == $user->getEmail()) {
             $mail->setFrom($sectionEditor->getEmail(), $sectionEditor->getFullName());
         }
         $mail->addBcc($sectionEditor->getEmail(), $sectionEditor->getFullName());
         unset($sectionEditor);
     }
     if ($mail->isEnabled()) {
         $mail->addRecipient($user->getEmail(), $user->getFullName());
         if ($journal->getSetting('copySubmissionAckSpecified')) {
             $copyAddress = $journal->getSetting('copySubmissionAckAddress');
             if (!empty($copyAddress)) {
                 $mail->addBcc($copyAddress);
             }
         }
         $section = $sectionDao->getSection($article->getSectionId());
         $mail->assignParams(array('authorName' => $user->getFullName(), 'authorUsername' => $user->getUsername(), 'address' => $sectionDao->getSettingValue($article->getSectionId(), 'address'), 'bankAccount' => $sectionDao->getSettingValue($article->getSectionId(), 'bankAccount'), 'proposalId' => $article->getProposalId(), 'submissionUrl' => Request::url(null, 'author', 'submission', $article->getId())));
         $mail->send();
     }
     // Send a regular notification to section editors
     $lastDecision = $article->getLastSectionDecision();
     switch ($lastDecision->getReviewType()) {
         case REVIEW_TYPE_INITIAL:
             if ($lastDecision->getRound() == 1) {
                 $message = 'notification.type.articleSubmitted.initialReview';
             } else {
                 $message = 'notification.type.articleReSubmitted.initialReview';
             }
             break;
         case REVIEW_TYPE_PR:
             if ($lastDecision->getRound() == 1) {
                 $message = 'notification.type.articleSubmitted.continuingReview';
//.........这里部分代码省略.........

//.........这里部分代码省略.........
     }
     if ($language = $articleNode->getAttribute('language')) {
         $article->setLanguage($language);
     }
     /* --- Handle authors --- */
     $hasErrors = false;
     for ($index = 0; $node = $articleNode->getChildByName('author', $index); $index++) {
         if (!NativeImportDom::handleAuthorNode($journal, $node, $issue, $section, $article, $authorErrors)) {
             $errors = array_merge($errors, $authorErrors);
             $hasErrors = true;
         }
     }
     if ($hasErrors) {
         return false;
     }
     $articleDao->insertArticle($article);
     $dependentItems[] = array('article', $article);
     // Create submission mangement records
     $copyeditorSubmissionDao =& DAORegistry::getDAO('CopyeditorSubmissionDAO');
     $copyeditorSubmission =& new CopyeditorSubmission();
     $copyeditorSubmission->setArticleId($article->getArticleId());
     $copyeditorSubmission->setCopyeditorId(0);
     $copyeditorSubmissionDao->insertCopyeditorSubmission($copyeditorSubmission);
     $layoutDao =& DAORegistry::getDAO('LayoutAssignmentDAO');
     $layoutAssignment =& new LayoutAssignment();
     $layoutAssignment->setArticleId($article->getArticleId());
     $layoutAssignment->setEditorId(0);
     $layoutAssignment->setDateAcknowledged(Core::getCurrentDate());
     // Make sure that imported articles go directly into the Archive. FIXME?
     $layoutDao->insertLayoutAssignment($layoutAssignment);
     $proofAssignmentDao =& DAORegistry::getDAO('ProofAssignmentDAO');
     $proofAssignment =& new ProofAssignment();
     $proofAssignment->setArticleId($article->getArticleId());
     $proofAssignment->setProofreaderId(0);
     $proofAssignmentDao->insertProofAssignment($proofAssignment);
     // Log the import in the article event log.
     import('article.log.ArticleLog');
     import('article.log.ArticleEventLogEntry');
     ArticleLog::logEvent($article->getArticleId(), ARTICLE_LOG_ARTICLE_IMPORT, ARTICLE_LOG_TYPE_DEFAULT, 0, 'log.imported', array('userName' => $user->getFullName(), 'articleId' => $article->getArticleId()));
     // Insert published article entry.
     $publishedArticle =& new PublishedArticle();
     $publishedArticle->setArticleId($article->getArticleId());
     $publishedArticle->setIssueId($issue->getIssueId());
     if ($node = $articleNode->getChildByName('date_published')) {
         $publishedDate = strtotime($node->getValue());
         if ($publishedDate === -1) {
             $errors[] = array('plugins.importexport.native.import.error.invalidDate', array('value' => $node->getValue()));
             return false;
         } else {
             $publishedArticle->setDatePublished($publishedDate);
         }
     }
     $node = $articleNode->getChildByName('open_access');
     $publishedArticle->setAccessStatus($node ? 1 : 0);
     $publishedArticle->setSeq(REALLY_BIG_NUMBER);
     $publishedArticle->setViews(0);
     $publishedArticle->setPublicArticleId($articleNode->getAttribute('public_id'));
     $publishedArticle->setPubId($publishedArticleDao->insertPublishedArticle($publishedArticle));
     $publishedArticleDao->resequencePublishedArticles($section->getSectionId(), $issue->getIssueId());
     /* --- Galleys (html or otherwise handled simultaneously) --- */
     import('file.ArticleFileManager');
     $articleFileManager =& new ArticleFileManager($article->getArticleId());
     /* --- Handle galleys --- */
     $hasErrors = false;
     $galleyCount = 0;
     for ($index = 0; $index < count($articleNode->children); $index++) {
         $node =& $articleNode->children[$index];
         if ($node->getName() == 'htmlgalley') {
             $isHtml = true;
         } elseif ($node->getName() == 'galley') {
             $isHtml = false;
         } else {
             continue;
         }
         if (!NativeImportDom::handleGalleyNode($journal, $node, $issue, $section, $article, $galleyErrors, $isCommandLine, $isHtml, $galleyCount, $articleFileManager)) {
             $errors = array_merge($errors, $galleyErrors);
             $hasErrors = true;
         }
         $galleyCount++;
     }
     if ($hasErrors) {
         return false;
     }
     /* --- Handle supplemental files --- */
     $hasErrors = false;
     for ($index = 0; $node = $articleNode->getChildByName('supplemental_file', $index); $index++) {
         if (!NativeImportDom::handleSuppFileNode($journal, $node, $issue, $section, $article, $suppFileErrors, $isCommandLine, $articleFileManager)) {
             $errors = array_merge($errors, $suppFileErrors);
             $hasErrors = true;
         }
     }
     if ($hasErrors) {
         return false;
     }
     // Index the inserted article.
     import('search.ArticleSearchIndex');
     ArticleSearchIndex::indexArticleMetadata($article);
     ArticleSearchIndex::indexArticleFiles($article);
     return true;
 }