Java CaArrayServer.connect方法代码示例

import gov.nih.nci.caarray.services.CaArrayServer; //导入方法依赖的package包/类
public static void main(String[] args) {
    ApiArrayDesignDownload client = new ApiArrayDesignDownload();
    try {
        CaArrayServer server = new CaArrayServer(BaseProperties.getServerHostname(), BaseProperties
                .getServerJndiPort());
        server.connect();
        CaArraySearchService searchService = server.getSearchService();
        System.out.println("Downloading array design details for " + ARRAY_DESIGN_NAME);
        client.downloadDetailsFromArrayDesign(server, searchService, ARRAY_DESIGN_NAME);
    } catch (ServerConnectionException e) {
        System.out.println("Could not connect to server.");
        e.printStackTrace();
    } catch (Throwable t) {
        System.out.println("Generic error.");
        t.printStackTrace();
    }
}
 

import gov.nih.nci.caarray.services.CaArrayServer; //导入方法依赖的package包/类
public static void main(String[] args) {
    ApiSearchExperimentByExample client = new ApiSearchExperimentByExample();
    try {
        // Connect to the server.
        CaArrayServer server = new CaArrayServer(BaseProperties.getServerHostname(), BaseProperties
                .getServerJndiPort());
        server.connect();

        // Get the search service.
        CaArraySearchService searchService = server.getSearchService();

        // Search for experiments.
        System.out.println("Searching for " + ORGANISM_NAME + " experiments run on the " + PROVIDER_NAME
                + " platform...");
        client.searchExperiments(searchService, PROVIDER_NAME, ORGANISM_NAME);
    } catch (ServerConnectionException e) {
        System.out.println("Could not connect to server.");
        e.printStackTrace();
    } catch (Throwable t) {
        System.out.println("Generic error.");
        t.printStackTrace();
    }
}
 

import gov.nih.nci.caarray.services.CaArrayServer; //导入方法依赖的package包/类
public static void main(String[] args) {
    ApiLoginAndSearch client = new ApiLoginAndSearch();
    try {
        CaArrayServer server = new CaArrayServer(BaseProperties.getServerHostname(), BaseProperties
                .getServerJndiPort());
        CaArraySearchService searchService = null;
        System.out.println("Searching for " + ORGANISM_NAME + " experiments run on the " + PROVIDER_NAME
                + " platform.");

        System.out.println("Searching as an anonymous user...");
        server.connect();
        searchService = server.getSearchService();
        client.searchExperiments(searchService, PROVIDER_NAME, ORGANISM_NAME);

        System.out.println("Searching as credentialled user " + USER_NAME + "...");
        server.connect(USER_NAME, PASSWD);
        searchService = server.getSearchService();
        client.searchExperiments(searchService, PROVIDER_NAME, ORGANISM_NAME);
    } catch (ServerConnectionException e) {
        System.out.println("Could not connect to server.");
        e.printStackTrace();
    } catch (Throwable t) {
        System.out.println("Generic error.");
        t.printStackTrace();
    }
}
 

import gov.nih.nci.caarray.services.CaArrayServer; //导入方法依赖的package包/类
public static void main(String[] args) {
    ApiDataSetDownload client = new ApiDataSetDownload();
    try {
        CaArrayServer server = new CaArrayServer(BaseProperties.getServerHostname(), BaseProperties
                .getServerJndiPort());
        server.connect();
        CaArraySearchService searchService = server.getSearchService();
        DataRetrievalService dataService = server.getDataRetrievalService();
        System.out.println("Downloading a DataSet from experiment " + EXPERIMENT_NAME + "...");
        client.getDataSetFromExperiment(searchService, dataService, EXPERIMENT_NAME, QUANTITATION_TYPES_CSV_STRING);
    } catch (ServerConnectionException e) {
        System.out.println("Could not connect to server.");
        e.printStackTrace();
    } catch (Throwable t) {
        System.out.println("Generic error.");
        t.printStackTrace();
    }
}
 

import gov.nih.nci.caarray.services.CaArrayServer; //导入方法依赖的package包/类
public static void main(String[] args) {
    ApiOneFileDataSetDownload client = new ApiOneFileDataSetDownload();
    try {
        CaArrayServer server = new CaArrayServer(BaseProperties.getServerHostname(), BaseProperties
                .getServerJndiPort());
        server.connect();
        CaArraySearchService searchService = server.getSearchService();
        System.out.println("Downloading a data set corresponding to one data file from Experiment "
                + EXPERIMENT_NAME);
        client.getDataSetFromExperiment(searchService, EXPERIMENT_NAME);
    } catch (ServerConnectionException e) {
        System.out.println("Could not connect to server.");
        e.printStackTrace();
    } catch (Throwable t) {
        System.out.println("Generic error.");
        t.printStackTrace();
    }
}
 

import gov.nih.nci.caarray.services.CaArrayServer; //导入方法依赖的package包/类
public static void main(String[] args) {
    ApiFileDownload client = new ApiFileDownload();
    try {
        CaArrayServer server = new CaArrayServer(BaseProperties.getServerHostname(), BaseProperties
                .getServerJndiPort());
        server.connect();
        CaArraySearchService searchService = server.getSearchService();
        FileRetrievalService fileRetrievalService = server.getFileRetrievalService();
        System.out.println("Downloading File Contents from Experiment: " + EXPERIMENT_NAME);
        client.downloadFileFromExperiment(searchService, fileRetrievalService, EXPERIMENT_NAME);
    } catch (ServerConnectionException e) {
        System.out.println("Could not connect to server.");
        e.printStackTrace();
    } catch (Throwable t) {
        System.out.println("Generic error.");
        t.printStackTrace();
    }
}
 

import gov.nih.nci.caarray.services.CaArrayServer; //导入方法依赖的package包/类
public void connect() throws Exception
{

    String hostName = TestProperties.getJavaServerHostname();
    int port = TestProperties.getJavaServerJndiPort();
    System.out.println("Connecting to java server: " + hostName + ":" + port);
    CaArrayServer server = new CaArrayServer(hostName, port);
    server.connect();
    javaSearchService = server.getSearchService();   
    dataService = server.getDataRetrievalService();
    arrayDesignService = server.getArrayDesignDetailsService();
    fileRetrievalService = server.getFileRetrievalService();
}
 

import gov.nih.nci.caarray.services.CaArrayServer; //导入方法依赖的package包/类
private void connectWithLogin() throws ServerConnectionException, FailedLoginException
{
    String hostName = TestProperties.getJavaServerHostname();
    int port = TestProperties.getJavaServerJndiPort();
    System.out.println("Connecting to java server: " + hostName + ":" + port);
    CaArrayServer server = new CaArrayServer(hostName, port);
    server.connect("caarrayuser","Pass#1234");
    loginSearchService = server.getSearchService();
}
 

import gov.nih.nci.caarray.services.CaArrayServer; //导入方法依赖的package包/类
/**
 * This will connect the user to caArray server.
 * 
 * @param userName
 * @param password
 * @throws Exception
 */
private void connect(String userName, String password)throws Exception{			
	server = new CaArrayServer(serverName, jndiPort);		
	server.connect(userName, password);
	
	// Need this to use later
	this.userName = userName;
}