本文整理汇总了Java中gov.nih.nci.caarray.services.CaArrayServer类的典型用法代码示例。如果您正苦于以下问题:Java CaArrayServer类的具体用法?Java CaArrayServer怎么用?Java CaArrayServer使用的例子?那么, 这里精选的类代码示例或许可以为您提供帮助。
CaArrayServer类属于gov.nih.nci.caarray.services包,在下文中一共展示了CaArrayServer类的12个代码示例,这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞,您的评价将有助于系统推荐出更棒的Java代码示例。
示例1: main
import gov.nih.nci.caarray.services.CaArrayServer; //导入依赖的package包/类
public static void main(String[] args) {
ApiArrayDesignDownload client = new ApiArrayDesignDownload();
try {
CaArrayServer server = new CaArrayServer(BaseProperties.getServerHostname(), BaseProperties
.getServerJndiPort());
server.connect();
CaArraySearchService searchService = server.getSearchService();
System.out.println("Downloading array design details for " + ARRAY_DESIGN_NAME);
client.downloadDetailsFromArrayDesign(server, searchService, ARRAY_DESIGN_NAME);
} catch (ServerConnectionException e) {
System.out.println("Could not connect to server.");
e.printStackTrace();
} catch (Throwable t) {
System.out.println("Generic error.");
t.printStackTrace();
}
}
示例2: downloadDetailsFromArrayDesign
import gov.nih.nci.caarray.services.CaArrayServer; //导入依赖的package包/类
private void downloadDetailsFromArrayDesign(CaArrayServer server, CaArraySearchService searchService,
String arrayDesignName) {
ArrayDesign arrayDesign = lookupArrayDesign(searchService, arrayDesignName);
if (arrayDesign == null) {
System.out.println("Error: Could not find array design.");
return;
}
ArrayDesignDetailsService arrayDesignDetailsService = server.getArrayDesignDetailsService();
ArrayDesignDetails details = arrayDesignDetailsService.getDesignDetails(arrayDesign);
if (details != null) {
System.out.println("Retrieved " + details.getFeatures().size() + " features, "
+ details.getProbeGroups().size() + " probe group(s), " + details.getProbes().size()
+ " physical probes and " + details.getLogicalProbes().size() + " logical probes.");
} else {
System.out.println("Error: Retrieved null array design details.");
}
}
示例3: main
import gov.nih.nci.caarray.services.CaArrayServer; //导入依赖的package包/类
public static void main(String[] args) {
ApiSearchExperimentByExample client = new ApiSearchExperimentByExample();
try {
// Connect to the server.
CaArrayServer server = new CaArrayServer(BaseProperties.getServerHostname(), BaseProperties
.getServerJndiPort());
server.connect();
// Get the search service.
CaArraySearchService searchService = server.getSearchService();
// Search for experiments.
System.out.println("Searching for " + ORGANISM_NAME + " experiments run on the " + PROVIDER_NAME
+ " platform...");
client.searchExperiments(searchService, PROVIDER_NAME, ORGANISM_NAME);
} catch (ServerConnectionException e) {
System.out.println("Could not connect to server.");
e.printStackTrace();
} catch (Throwable t) {
System.out.println("Generic error.");
t.printStackTrace();
}
}
示例4: main
import gov.nih.nci.caarray.services.CaArrayServer; //导入依赖的package包/类
public static void main(String[] args) {
ApiLoginAndSearch client = new ApiLoginAndSearch();
try {
CaArrayServer server = new CaArrayServer(BaseProperties.getServerHostname(), BaseProperties
.getServerJndiPort());
CaArraySearchService searchService = null;
System.out.println("Searching for " + ORGANISM_NAME + " experiments run on the " + PROVIDER_NAME
+ " platform.");
System.out.println("Searching as an anonymous user...");
server.connect();
searchService = server.getSearchService();
client.searchExperiments(searchService, PROVIDER_NAME, ORGANISM_NAME);
System.out.println("Searching as credentialled user " + USER_NAME + "...");
server.connect(USER_NAME, PASSWD);
searchService = server.getSearchService();
client.searchExperiments(searchService, PROVIDER_NAME, ORGANISM_NAME);
} catch (ServerConnectionException e) {
System.out.println("Could not connect to server.");
e.printStackTrace();
} catch (Throwable t) {
System.out.println("Generic error.");
t.printStackTrace();
}
}
示例5: main
import gov.nih.nci.caarray.services.CaArrayServer; //导入依赖的package包/类
public static void main(String[] args) {
ApiDataSetDownload client = new ApiDataSetDownload();
try {
CaArrayServer server = new CaArrayServer(BaseProperties.getServerHostname(), BaseProperties
.getServerJndiPort());
server.connect();
CaArraySearchService searchService = server.getSearchService();
DataRetrievalService dataService = server.getDataRetrievalService();
System.out.println("Downloading a DataSet from experiment " + EXPERIMENT_NAME + "...");
client.getDataSetFromExperiment(searchService, dataService, EXPERIMENT_NAME, QUANTITATION_TYPES_CSV_STRING);
} catch (ServerConnectionException e) {
System.out.println("Could not connect to server.");
e.printStackTrace();
} catch (Throwable t) {
System.out.println("Generic error.");
t.printStackTrace();
}
}
示例6: main
import gov.nih.nci.caarray.services.CaArrayServer; //导入依赖的package包/类
public static void main(String[] args) {
ApiOneFileDataSetDownload client = new ApiOneFileDataSetDownload();
try {
CaArrayServer server = new CaArrayServer(BaseProperties.getServerHostname(), BaseProperties
.getServerJndiPort());
server.connect();
CaArraySearchService searchService = server.getSearchService();
System.out.println("Downloading a data set corresponding to one data file from Experiment "
+ EXPERIMENT_NAME);
client.getDataSetFromExperiment(searchService, EXPERIMENT_NAME);
} catch (ServerConnectionException e) {
System.out.println("Could not connect to server.");
e.printStackTrace();
} catch (Throwable t) {
System.out.println("Generic error.");
t.printStackTrace();
}
}
示例7: main
import gov.nih.nci.caarray.services.CaArrayServer; //导入依赖的package包/类
public static void main(String[] args) {
ApiFileDownload client = new ApiFileDownload();
try {
CaArrayServer server = new CaArrayServer(BaseProperties.getServerHostname(), BaseProperties
.getServerJndiPort());
server.connect();
CaArraySearchService searchService = server.getSearchService();
FileRetrievalService fileRetrievalService = server.getFileRetrievalService();
System.out.println("Downloading File Contents from Experiment: " + EXPERIMENT_NAME);
client.downloadFileFromExperiment(searchService, fileRetrievalService, EXPERIMENT_NAME);
} catch (ServerConnectionException e) {
System.out.println("Could not connect to server.");
e.printStackTrace();
} catch (Throwable t) {
System.out.println("Generic error.");
t.printStackTrace();
}
}
示例8: downloadDetailsFromArrayDesign
import gov.nih.nci.caarray.services.CaArrayServer; //导入依赖的package包/类
private void downloadDetailsFromArrayDesign(CaArrayServer server, CaArraySearchService searchService, String arrayDesignName) {
ArrayDesign arrayDesign = lookupArrayDesign(searchService, arrayDesignName);
if (arrayDesign != null) {
ArrayDesignDetailsService arrayDesignDetailsService = server.getArrayDesignDetailsService();
ArrayDesignDetails details = arrayDesignDetailsService.getDesignDetails(arrayDesign);
logForSilverCompatibility(API_CALL, "ArrayDesignDetailsService.getDesignDetails()");
if (details != null) {
logForSilverCompatibility(TEST_OUTPUT, "Retrieved " + arrayDesignName + " with " + details.getFeatures().size() + " features, "
+ details.getProbeGroups().size() + " probe groups, " + details.getProbes().size()
+ " probes and " + details.getLogicalProbes().size() + " logical probes.");
assertTrue(true);
} else {
logForSilverCompatibility(TEST_OUTPUT, "Error: Array Design Details was null.");
assertTrue("Error: Array Design Details was null.", false);
}
} else {
logForSilverCompatibility(TEST_OUTPUT, "Error: Array Design was null.");
assertTrue("Error: Array Design was null.", false);
}
}
示例9: downloadFileFromExperiment
import gov.nih.nci.caarray.services.CaArrayServer; //导入依赖的package包/类
private void downloadFileFromExperiment(CaArrayServer server, CaArraySearchService searchService, String experimentName) {
Experiment experiment = lookupExperiment(searchService, experimentName);
if (experiment != null) {
Hybridization hybridization = getFirstHybridization(searchService, experiment);
if (hybridization != null) {
CaArrayFile dataFile = getDataFile(searchService, hybridization);
if (dataFile != null) {
logForSilverCompatibility(TEST_OUTPUT, "Downloading file " + dataFile.getName());
FileRetrievalService fileRetrievalService = server.getFileRetrievalService();
byte[] byteArray = fileRetrievalService.readFile(dataFile);
logForSilverCompatibility(API_CALL, "FileRetrievalService.readFile(CaArrayFile)");
if (byteArray != null) {
logForSilverCompatibility(TEST_OUTPUT, "Retrieved " + byteArray.length + " bytes.");
assertTrue(byteArray.length > 0);
} else {
logForSilverCompatibility(TEST_OUTPUT, "Error: Retrieved null byte array.");
assertTrue("Error: Retrieved null byte array.", false);
}
} else {
logForSilverCompatibility(TEST_OUTPUT, "Error: Retrieved null data file.");
assertTrue("Error: Retrieved null data file.", false);
}
} else {
logForSilverCompatibility(TEST_OUTPUT,
"Error: Retrieved null hybridization for experiment with title " + experimentName);
assertTrue("Error: Retrieved null hybridization.", false);
}
} else {
logForSilverCompatibility(TEST_OUTPUT, "Error: Could not find experiment " + experimentName);
assertTrue("Error: Could not find experiment.", false);
}
}
示例10: connect
import gov.nih.nci.caarray.services.CaArrayServer; //导入依赖的package包/类
public void connect() throws Exception
{
String hostName = TestProperties.getJavaServerHostname();
int port = TestProperties.getJavaServerJndiPort();
System.out.println("Connecting to java server: " + hostName + ":" + port);
CaArrayServer server = new CaArrayServer(hostName, port);
server.connect();
javaSearchService = server.getSearchService();
dataService = server.getDataRetrievalService();
arrayDesignService = server.getArrayDesignDetailsService();
fileRetrievalService = server.getFileRetrievalService();
}
示例11: connectWithLogin
import gov.nih.nci.caarray.services.CaArrayServer; //导入依赖的package包/类
private void connectWithLogin() throws ServerConnectionException, FailedLoginException
{
String hostName = TestProperties.getJavaServerHostname();
int port = TestProperties.getJavaServerJndiPort();
System.out.println("Connecting to java server: " + hostName + ":" + port);
CaArrayServer server = new CaArrayServer(hostName, port);
server.connect("caarrayuser","Pass#1234");
loginSearchService = server.getSearchService();
}
示例12: connect
import gov.nih.nci.caarray.services.CaArrayServer; //导入依赖的package包/类
/**
* This will connect the user to caArray server.
*
* @param userName
* @param password
* @throws Exception
*/
private void connect(String userName, String password)throws Exception{
server = new CaArrayServer(serverName, jndiPort);
server.connect(userName, password);
// Need this to use later
this.userName = userName;
}