本文整理汇总了Java中gov.nih.nci.caarray.domain.project.Experiment.getExperimentContacts方法的典型用法代码示例。如果您正苦于以下问题:Java Experiment.getExperimentContacts方法的具体用法?Java Experiment.getExperimentContacts怎么用?Java Experiment.getExperimentContacts使用的例子?那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类gov.nih.nci.caarray.domain.project.Experiment
的用法示例。
在下文中一共展示了Experiment.getExperimentContacts方法的4个代码示例,这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞,您的评价将有助于系统推荐出更棒的Java代码示例。
示例1: mergeExperimentContacts
import gov.nih.nci.caarray.domain.project.Experiment; //导入方法依赖的package包/类
private void mergeExperimentContacts(Experiment originalExperiment, Experiment translatedExperiment) {
for (final ExperimentContact translatedEc : translatedExperiment.getExperimentContacts()) {
final List<ExperimentContact> originalExperimentContacts = originalExperiment.getExperimentContacts();
boolean isNewEc = true;
for (final ExperimentContact originalEc : originalExperimentContacts) {
if (originalEc.equalsBaseContact(translatedEc)) {
isNewEc = false;
break;
}
}
if (isNewEc) {
translatedEc.setExperiment(originalExperiment);
originalExperimentContacts.add(translatedEc);
}
}
}
示例2: writeSeriesSection
import gov.nih.nci.caarray.domain.project.Experiment; //导入方法依赖的package包/类
private static void writeSeriesSection(Experiment experiment, String permaLinkUrl, PrintWriter out) {
out.print("^SERIES=");
out.println(experiment.getPublicIdentifier());
out.print("!Series_title=");
out.println(experiment.getTitle());
out.print("!Series_summary=");
final String desc =
StringUtils.isNotBlank(experiment.getDescription()) ? experiment.getDescription() : experiment
.getTitle();
out.println(desc);
writeExperimentDesignTypes(experiment, desc, out);
for (final Publication pub : experiment.getPublications()) {
out.print("!Series_pubmed_id=");
out.println(pub.getPubMedId());
}
for (final ExperimentContact c : experiment.getExperimentContacts()) {
writeExperimentContact(c, out);
}
out.print("!Series_web_link=");
out.println(permaLinkUrl);
for (final Hybridization h : experiment.getHybridizations()) {
out.print("!Series_sample_id=");
out.println(h.getName());
}
}
示例3: testTranslatePersonsWithNullAffiliation
import gov.nih.nci.caarray.domain.project.Experiment; //导入方法依赖的package包/类
@Test
public void testTranslatePersonsWithNullAffiliation() throws Exception {
final CaArrayFileSet fileSet = TestMageTabSets.getFileSet(TestMageTabSets.MAGE_TAB_SPECIFICATION_INPUT_SET);
final MageTabDocumentSet docSet = MageTabParser.INSTANCE
.parse(TestMageTabSets.MAGE_TAB_SPECIFICATION_INPUT_SET);
docSet.getIdfDocuments().iterator().next().getInvestigation().getPersons().iterator().next()
.setAffiliation(null);
final CaArrayTranslationResult result = this.translator.translate(docSet, fileSet);
final Experiment experiment = result.getInvestigations().iterator().next();
for (final ExperimentContact contact : experiment.getExperimentContacts()) {
for (final Organization organization : contact.getContact().getAffiliations()) {
assertNotNull(organization);
}
}
}
示例4: compareExperiments
import gov.nih.nci.caarray.domain.project.Experiment; //导入方法依赖的package包/类
/**
* Compare 2 experiments to check if they are the same.
*
* @return true if the 2 experiments are the same and false otherwise.
*/
@SuppressWarnings("PMD")
private boolean compareExperiments(Experiment retrievedInv, Experiment dummyInv) {
checkBioMaterials(dummyInv, retrievedInv);
checkHybridizations(dummyInv, retrievedInv);
// Experiment summary.
if (!dummyInv.getTitle().equals(retrievedInv.getTitle())) {
return false;
}
// Contacts
final Collection<ExperimentContact> contacts = retrievedInv.getExperimentContacts();
if (contacts.isEmpty() || contacts.size() != 1) {
return false;
}
final Iterator<ExperimentContact> i = contacts.iterator();
final Person person = i.next().getContact();
if (!DUMMY_PERSON.getFirstName().equals(person.getFirstName())) {
return false;
}
// Annotations
final Collection<Term> retrievedNormTypes = retrievedInv.getNormalizationTypes();
if (retrievedNormTypes.isEmpty() || retrievedNormTypes.size() != 1) {
return false;
}
final Iterator<Term> i2 = retrievedNormTypes.iterator();
final Term retrievedNormType = i2.next();
if (!DUMMY_NORMALIZATION_TYPE.getValue().equals(retrievedNormType.getValue())) {
return false;
}
// Factors
final Collection<Factor> factors = retrievedInv.getFactors();
if (factors.isEmpty() || factors.size() != 2) {
return false;
}
// Publications
final Collection<Publication> publications = retrievedInv.getPublications();
if (publications.isEmpty() || publications.size() != 2) {
return false;
}
return true;
}