C# libsbmlcs.Model类代码示例

 public void setUp()
 {
     string filename = "../../sbml/annotation/test/test-data/annotationL3.xml";
       d = libsbml.readSBML(filename);
       m = d.getModel();
       c = m.getCompartment(0);
 }

 public void setUp()
 {
     M = new  Model(3,1);
       if (M == null);
       {
       }
 }

 public void test_AssignmentRule_parent_create()
 {
     Model m = new Model(2,4);
       AssignmentRule r = m.createAssignmentRule();
       ListOf lo = m.getListOfRules();
       assertTrue( lo == m.getRule(0).getParentSBMLObject() );
       assertTrue( lo == r.getParentSBMLObject() );
       assertTrue( m == lo.getParentSBMLObject() );
 }

 public void test_CompartmentType_parent_create()
 {
     Model m = new Model(2,4);
       CompartmentType ct = m.createCompartmentType();
       ListOf lo = m.getListOfCompartmentTypes();
       assertTrue( lo == m.getCompartmentType(0).getParentSBMLObject() );
       assertTrue( lo == ct.getParentSBMLObject() );
       assertTrue( m == lo.getParentSBMLObject() );
 }

 public void test_CompartmentType_parent_add()
 {
     CompartmentType ct = new CompartmentType(2,4);
       Model m = new Model(2,4);
       ct.setId("ct");
       m.addCompartmentType(ct);
       ct = null;
       ListOf lo = m.getListOfCompartmentTypes();
       assertTrue( lo == m.getCompartmentType(0).getParentSBMLObject() );
       assertTrue( m == lo.getParentSBMLObject() );
 }

 public void test_Model_addCompartment2()
 {
     Model m = new  Model(2,2);
       Compartment c = new  Compartment(2,1);
       c.setId( "c");
       int i = m.addCompartment(c);
       assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH );
       assertTrue( m.getNumCompartments() == 0 );
       c = null;
       m = null;
 }

 public void test_SBMLDocument_setLevelAndVersion()
 {
     SBMLDocument d = new  SBMLDocument(2,2);
       Model m1 = new  Model(2,2);
       d.setModel(m1);
       assertTrue( d.setLevelAndVersion(2,3,false) == true );
       assertTrue( d.setLevelAndVersion(2,1,false) == true );
       assertTrue( d.setLevelAndVersion(1,2,false) == true );
       assertTrue( d.setLevelAndVersion(1,1,false) == false );
       d = null;
 }

 public void test_Model_addCompartment1()
 {
     Model m = new  Model(2,2);
       Compartment c = new  Compartment(2,2);
       int i = m.addCompartment(c);
       assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT );
       c.setId( "c");
       i = m.addCompartment(c);
       assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
       assertTrue( m.getNumCompartments() == 1 );
       c = null;
       m = null;
 }

 public void test_CompartmentType_ancestor_add()
 {
     CompartmentType ct = new CompartmentType(2,4);
       Model m = new Model(2,4);
       ct.setId("ct");
       m.addCompartmentType(ct);
       ct = null;
       ListOf lo = m.getListOfCompartmentTypes();
       CompartmentType obj = m.getCompartmentType(0);
       assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null );
 }

 public void test_AssignmentRule_ancestor_create()
 {
     Model m = new Model(2,4);
       AssignmentRule r = m.createAssignmentRule();
       ListOf lo = m.getListOfRules();
       assertTrue( r.getAncestorOfType(libsbml.SBML_MODEL) == m );
       assertTrue( r.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
       assertTrue( r.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
       assertTrue( r.getAncestorOfType(libsbml.SBML_EVENT) == null );
       Rule obj = m.getRule(0);
       assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
       assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null );
 }

 public void test_ListOf_append()
 {
     Model m = new  Model(2,4);
       m.createCompartment();
       ListOf loc = m.getListOfCompartments();
       assertTrue( loc.size() == 1 );
       SBase c = new  Compartment(2,4);
       int i = loc.append(c);
       assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
       assertTrue( loc.size() == 2 );
       SBase sp = new  Species(2,4);
       i = loc.append(sp);
       assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT );
       assertTrue( loc.size() == 2 );
       m = null;
       sp = null;
 }

 public void test_SBMLDocument_setLevelAndVersion_Error()
 {
     SBMLDocument d = new  SBMLDocument();
       d.setLevelAndVersion(2,1,true);
       Model m1 = new  Model(2,1);
       Unit u = new  Unit(2,1);
       u.setKind(libsbml.UnitKind_forName("mole"));
       u.setOffset(3.2);
       UnitDefinition ud = new  UnitDefinition(2,1);
       ud.setId( "ud");
       ud.addUnit(u);
       m1.addUnitDefinition(ud);
       d.setModel(m1);
       assertTrue( d.setLevelAndVersion(2,2,true) == false );
       assertTrue( d.setLevelAndVersion(2,3,true) == false );
       assertTrue( d.setLevelAndVersion(1,2,true) == false );
       assertTrue( d.setLevelAndVersion(1,1,true) == false );
       d = null;
 }

 /**
    * Copies a given Model object's subcomponents and appends the copies to
    * the appropriate places in this Model.
    *
    * This method also calls the <code>appendFrom</code> method on all libSBML
    * plug-in objects.
    *
    *
  *
  * SBML Level&nbsp;3 consists of a <em>Core</em> definition that can be extended
  * via optional SBML Level&nbsp;3 <em>packages</em>.  A given model may indicate
  * that it uses one or more SBML packages, and likewise, a software tool may be
  * able to support one or more packages.  LibSBML does not come preconfigured
  * with all possible packages included and enabled, in part because not all
  * package specifications have been finalized.  To support the ability for
  * software systems to enable support for the Level&nbsp;3 packages they choose,
  * libSBML features a <em>plug-in</em> mechanism.  Each SBML Level&nbsp;3
  * package is implemented in a separate code plug-in that can be enabled by the
  * application to support working with that SBML package.  A given SBML model
  * may thus contain not only objects defined by SBML Level&nbsp;3 Core, but also
  * objects created by libSBML plug-ins supporting additional Level&nbsp;3
  * packages.
  *
  *
    *
    * @param model the Model to merge with this one.
    *
    */
 public new int appendFrom(Model model)
 {
     int ret = libsbmlPINVOKE.Model_appendFrom(swigCPtr, Model.getCPtr(model));
     return ret;
 }

 /** */
 /* libsbml-internal */
 public static bool expandInitialAssignments(Model m)
 {
     bool ret = libsbmlPINVOKE.SBMLTransforms_expandInitialAssignments(Model.getCPtr(m));
     return ret;
 }

 public static IdList mapComponentValues(Model m)
 {
     IdList ret = new IdList(libsbmlPINVOKE.SBMLTransforms_mapComponentValues(Model.getCPtr(m)), true);
     return ret;
 }