本文整理汇总了C#中Workspace.assembleProteinGroups方法的典型用法代码示例。如果您正苦于以下问题：C# Workspace.assembleProteinGroups方法的具体用法？C# Workspace.assembleProteinGroups怎么用？C# Workspace.assembleProteinGroups使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类Workspace的用法示例。
在下文中一共展示了Workspace.assembleProteinGroups方法的1个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的C#代码示例。
示例1: Main
//.........这里部分代码省略.........
presentationParam = new ProcessingParam();
presentationParam.name = itr.Key;
presentationParam.value = itr.Value;
presentationEvent.parameters.Add( presentationParam );
}
#region Pre-filtering validation
{ ws.validate( rtConfig.MaxFDR, 0, 100 ); }
#endregion
#region Apply filtering criteria and assemble proteins
start = DateTime.Now.Ticks;
Console.WriteLine( "Filtering out peptides shorter than " + rtConfig.MinPeptideLength + " residues..." );
ws.filterByMinimumPeptideLength( rtConfig.MinPeptideLength );
Console.WriteLine( "\nFinished filtering by minimum peptide length; " + new TimeSpan( DateTime.Now.Ticks - start ).TotalSeconds + " seconds elapsed." ); { ws.validate( rtConfig.MaxFDR, 0, 100 ); }
start = DateTime.Now.Ticks;
Console.WriteLine( "Filtering out results with more than " + rtConfig.MaxAmbiguousIds + " ambiguous ids..." );
ws.filterByResultAmbiguity( rtConfig.MaxAmbiguousIds );
Console.WriteLine( "\nFinished filtering by maximum ambiguous ids; " + new TimeSpan( DateTime.Now.Ticks - start ).TotalSeconds + " seconds elapsed." ); { ws.validate( rtConfig.MaxFDR, 0, rtConfig.MaxAmbiguousIds ); }
start = DateTime.Now.Ticks;
Console.WriteLine( "Filtering out proteins with less than " + rtConfig.MinDistinctPeptides + " distinct peptides..." );
ws.filterByDistinctPeptides( rtConfig.MinDistinctPeptides );
Console.WriteLine( "\nFinished filtering by minimum distinct peptides; " + new TimeSpan( DateTime.Now.Ticks - start ).TotalSeconds + " seconds elapsed." ); { ws.validate( rtConfig.MaxFDR, rtConfig.MinDistinctPeptides, rtConfig.MaxAmbiguousIds ); }
start = DateTime.Now.Ticks;
Console.WriteLine( "Filtering out proteins with less than " + rtConfig.MinSpectraPerProtein + " spectra..." );
ws.filterBySpectralCount( rtConfig.MinSpectraPerProtein );
Console.WriteLine( "\nFinished filtering by minimum protein spectral counts; " + new TimeSpan( DateTime.Now.Ticks - start ).TotalSeconds + " seconds elapsed." ); { ws.validate( rtConfig.MaxFDR, rtConfig.MinDistinctPeptides, rtConfig.MaxAmbiguousIds ); }
start = DateTime.Now.Ticks;
Console.WriteLine( "Assembling protein groups..." );
ws.assembleProteinGroups();
Console.WriteLine( "\nFinished assembling protein groups; " + new TimeSpan( DateTime.Now.Ticks - start ).TotalSeconds + " seconds elapsed." ); { ws.validate( rtConfig.MaxFDR, rtConfig.MinDistinctPeptides, rtConfig.MaxAmbiguousIds ); }
start = DateTime.Now.Ticks;
Console.WriteLine( "Assembling peptide groups..." );
ws.assemblePeptideGroups();
Console.WriteLine( "\nFinished assembling peptide groups; " + new TimeSpan( DateTime.Now.Ticks - start ).TotalSeconds + " seconds elapsed." ); { ws.validate( rtConfig.MaxFDR, rtConfig.MinDistinctPeptides, rtConfig.MaxAmbiguousIds ); }
start = DateTime.Now.Ticks;
Console.WriteLine( "Assembling clusters..." );
ws.assembleClusters();
Console.WriteLine( "\nFinished assembling clusters; " + new TimeSpan( DateTime.Now.Ticks - start ).TotalSeconds + " seconds elapsed." ); { ws.validate( rtConfig.MaxFDR, rtConfig.MinDistinctPeptides, rtConfig.MaxAmbiguousIds ); }
start = DateTime.Now.Ticks;
// Determine the minimum number of protein clusters needed
// to explain all the peptides.
Console.WriteLine( "Assembling minimum covering set for clusters..." );
int clusterCount = 0;
foreach( ClusterInfo c in ws.clusters )
{
++clusterCount;
Console.Write( "Assembling minimum covering set for cluster " + clusterCount + " of " + ws.clusters.Count + " (" + c.proteinGroups.Count + " protein groups, " + c.results.Count + " results) \r" );
ws.assembleMinimumCoveringSet( c );
}
Console.WriteLine( "\nFinished assembling minimum covering sets; " + new TimeSpan( DateTime.Now.Ticks - start ).TotalSeconds + " seconds elapsed." ); { ws.validate( rtConfig.MaxFDR, rtConfig.MinDistinctPeptides, rtConfig.MaxAmbiguousIds ); }
if( rtConfig.MinAdditionalPeptides > 0 )
{
start = DateTime.Now.Ticks;
Console.WriteLine( "Filtering workspace by minimum covering set..." );
ws.filterByMinimumCoveringSet( rtConfig.MinAdditionalPeptides );
Console.WriteLine( "\nFinished filtering by minimum covering set; " + new TimeSpan( DateTime.Now.Ticks - start ).TotalSeconds + " seconds elapsed." ); { ws.validate( rtConfig.MaxFDR, rtConfig.MinDistinctPeptides, rtConfig.MaxAmbiguousIds ); }
}