本文整理汇总了C#中Workspace.assemblePeptidesXmlToStream方法的典型用法代码示例。如果您正苦于以下问题：C# Workspace.assemblePeptidesXmlToStream方法的具体用法？C# Workspace.assemblePeptidesXmlToStream怎么用？C# Workspace.assemblePeptidesXmlToStream使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类Workspace的用法示例。
在下文中一共展示了Workspace.assemblePeptidesXmlToStream方法的1个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的C#代码示例。
示例1: Main
//.........这里部分代码省略.........
string rootInputDirectory;
Util.LongestCommonPrefix(inputFilepaths, out rootInputDirectory);
if (String.IsNullOrEmpty(rootInputDirectory))
rootInputDirectory = Directory.GetCurrentDirectory();
else if (!Directory.Exists(rootInputDirectory))
rootInputDirectory = Path.GetDirectoryName(rootInputDirectory);
QuantifyingTransmogrifier.quantify(ws, rootInputDirectory, rtConfig.quantitationMethod);
try
{
Console.WriteLine( "Writing overall summary to filepath: " + wsSummaryFilename );
outputStream = new StreamWriter( wsSummaryFilename );
Presentation.exportSummaryTable( ws, outputStream, rtConfig.outputPrefix, '\t' );
outputStream.Close();
} catch( Exception e )
{
Console.Error.WriteLine( "\nError writing overall summary: " + e.Message );
}
Console.WriteLine( "Writing sequences per protein table to filepath: " + wsSequencesPerProteinByGroupFilename );
try
{
outputStream = new StreamWriter( wsSequencesPerProteinByGroupFilename );
Presentation.exportProteinSequencesTable( ws, outputStream, rtConfig.outputPrefix, '\t' );
outputStream.Close();
} catch( Exception e )
{
Console.Error.WriteLine( "\nError writing sequences per protein table: " + e.Message );
}
try
{
Console.WriteLine( "Writing spectra per protein table to filepath: " + wsSpectraPerProteinByGroupFilename );
outputStream = new StreamWriter( wsSpectraPerProteinByGroupFilename );
Presentation.exportProteinSpectraTable( ws, outputStream, rtConfig.outputPrefix, '\t' );
outputStream.Close();
} catch( Exception e )
{
Console.Error.WriteLine( "\nError writing spectra per protein table: " + e.Message );
}
try
{
Console.WriteLine( "Writing spectra per peptide table to filepath: " + wsSpectraPerPeptideByGroupFilename );
outputStream = new StreamWriter( wsSpectraPerPeptideByGroupFilename );
Presentation.exportPeptideSpectraTable(ws, outputStream, rtConfig.outputPrefix, rtConfig.quantitationMethod, '\t');
outputStream.Close();
} catch( Exception e )
{
Console.Error.WriteLine( "\nError writing spectra per peptide table: " + e.Message );
}
try
{
Console.WriteLine( "Writing spectra table to filepath: " + wsSpectraTableFilename );
outputStream = new StreamWriter( wsSpectraTableFilename );
Presentation.exportSpectraTable( ws, outputStream, rtConfig.outputPrefix, rtConfig.quantitationMethod, '\t' );
outputStream.Close();
} catch( Exception e )
{
Console.Error.WriteLine( "\nError writing spectra table: " + e.Message );
}
try
{
Console.WriteLine( "Writing protein group to peptide group table to filepath: " + wsProteinGroupToPeptideGroupFilename );
outputStream = new StreamWriter( wsProteinGroupToPeptideGroupFilename );
Presentation.exportProteinGroupToPeptideGroupTable( ws, outputStream, '\t' );
outputStream.Close();
} catch( Exception e )
{
Console.Error.WriteLine( "\nError protein group to peptide group table: " + e.Message );
}
try
{
Console.WriteLine( "Writing spectra per peptide group table to filepath: " + wsSpectraPerPeptideGroupFilename );
outputStream = new StreamWriter(wsSpectraPerPeptideGroupFilename);
Presentation.exportPeptideGroupSpectraTable(ws, outputStream, rtConfig.outputPrefix, rtConfig.quantitationMethod, '\t');
outputStream.Close();
}
catch (Exception e)
{
Console.Error.WriteLine( "\nError spectra per peptide group table: " + e.Message );
}
}
#endregion
#region Xml report
if( rtConfig.OutputXmlReport )
{
string wsAssembledXmlFilename = rtConfig.outputPrefix + "-assembled.idpXML";
outputStream = new StreamWriter( wsAssembledXmlFilename );
ws.assemblePeptidesXmlToStream( outputStream );
outputStream.Close();
}
#endregion
}