本文整理汇总了C++中Seq::SetName方法的典型用法代码示例。如果您正苦于以下问题：C++ Seq::SetName方法的具体用法？C++ Seq::SetName怎么用？C++ Seq::SetName使用的例子？那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类Seq的用法示例。
在下文中一共展示了Seq::SetName方法的5个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的C++代码示例。
示例1: EstringOp
void EstringOp(const short es[], const Seq &sIn, Seq &sOut)
{
#if DEBUG
unsigned uSymbols;
unsigned uIndels;
EstringCounts(es, &uSymbols, &uIndels);
assert(sIn.Length() == uSymbols);
#endif
sOut.Clear();
sOut.SetName(sIn.GetName());
int p = 0;
for (;;)
{
int n = *es++;
if (0 == n)
break;
if (n > 0)
for (int i = 0; i < n; ++i)
{
char c = sIn[p++];
sOut.push_back(c);
}
else
for (int i = 0; i < -n; ++i)
sOut.push_back('-');
}
}示例2: FromFASTAFile
void SeqVect::FromFASTAFile(TextFile &File)
{
Clear();
FILE *f = File.GetStdioFile();
for (;;)
{
char *Label;
unsigned uLength;
char *SeqData = GetFastaSeq(f, &uLength, &Label);
if (0 == SeqData)
return;
Seq *ptrSeq = new Seq;
for (unsigned i = 0; i < uLength; ++i)
{
char c = SeqData[i];
ptrSeq->push_back(c);
}
ptrSeq->SetName(Label);
push_back(ptrSeq);
delete[] SeqData;
delete[] Label;
}
}示例3: SeqFromMSACols
static void SeqFromMSACols(const MSA &msa, unsigned uSeqIndex, unsigned uColFrom,
unsigned uColTo, Seq &s)
{
s.Clear();
s.SetName(msa.GetSeqName(uSeqIndex));
s.SetId(msa.GetSeqId(uSeqIndex));
for (unsigned uColIndex = uColFrom; uColIndex <= uColTo; ++uColIndex)
{
char c = msa.GetChar(uSeqIndex, uColIndex);
if (!IsGapChar(c))
s.AppendChar(c);
}
}示例4: SeqVectFromMSA
void SeqVectFromMSA(const MSA &msa, SeqVect &v)
{
v.Clear();
const unsigned uSeqCount = msa.GetSeqCount();
for (unsigned uSeqIndex = 0; uSeqIndex < uSeqCount; ++uSeqIndex)
{
Seq s;
msa.GetSeq(uSeqIndex, s);
s.StripGaps();
//if (0 == s.Length())
// continue;
const char *ptrName = msa.GetSeqName(uSeqIndex);
s.SetName(ptrName);
v.AppendSeq(s);
}
}示例5: PathSeq
static void PathSeq(const Seq &s, const PWPath &Path, bool bRight, Seq &sOut)
{
short *esA;
short *esB;
PathToEstrings(Path, &esA, &esB);
const unsigned uSeqLength = s.Length();
const unsigned uEdgeCount = Path.GetEdgeCount();
sOut.Clear();
sOut.SetName(s.GetName());
unsigned uPos = 0;
for (unsigned uEdgeIndex = 0; uEdgeIndex < uEdgeCount; ++uEdgeIndex)
{
const PWEdge &Edge = Path.GetEdge(uEdgeIndex);
char cType = Edge.cType;
if (bRight)
{
if (cType == 'I')
cType = 'D';
else if (cType == 'D')
cType = 'I';
}
switch (cType)
{
case 'M':
sOut.AppendChar(s[uPos++]);
break;
case 'D':
sOut.AppendChar('-');
break;
case 'I':
sOut.AppendChar(s[uPos++]);
break;
default:
Quit("PathSeq, invalid edge type %c", cType);
}
}
}