C++ Domain::getDomainType方法代码示例

本文整理汇总了C++中Domain::getDomainType方法的典型用法代码示例。如果您正苦于以下问题：C++ Domain::getDomainType方法的具体用法？C++ Domain::getDomainType怎么用？C++ Domain::getDomainType使用的例子？那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类Domain的用法示例。

在下文中一共展示了Domain::getDomainType方法的3个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的C++代码示例。

示例1: readSpatialSBML

void readSpatialSBML() {
	SBMLDocument *document2 = readSBML("spatial_example2.xml");
  
	Model *model2 = document2->getModel();
	Compartment *comp;
	SpatialCompartmentPlugin* cplugin;
	for (unsigned int i = 0; i < model2->getNumCompartments(); i++) {
		comp = model2->getCompartment(i);
		cout << "Compartment" << i << ": "  << comp->getId() << endl;
		cplugin = static_cast<SpatialCompartmentPlugin*>(comp->getPlugin("spatial"));
		if (cplugin->getCompartmentMapping()->isSetId()) {
			cout << "Comp" << i << "  CMSpId: "  << cplugin->getCompartmentMapping()->getId() << endl;
			cout << "Comp" << i << "  CM_DType: "  << cplugin->getCompartmentMapping()->getDomainType() << endl;
			cout << "Comp" << i << "  CM_UnitSz: "  << cplugin->getCompartmentMapping()->getUnitSize() << endl;
		}
	}

	Species *sp;
	SpatialSpeciesPlugin* srplugin;
	for (unsigned int i = 0; i < model2->getNumSpecies(); i++) {
		sp = model2->getSpecies(i);
		cout << "Species" << i << ": "      << sp->getId()      << endl;
		srplugin = static_cast<SpatialSpeciesPlugin*>(sp->getPlugin("spatial"));
		if (srplugin->getIsSpatial()) {
			cout << "species" << i << "  isSpatial: "  << srplugin->getIsSpatial() << endl;
		}
	}

	Parameter *param;
	SpatialParameterPlugin* pplugin;
	for (unsigned int i = 0; i < model2->getNumParameters(); i++) {
		param = model2->getParameter(i);
		cout << "Parameter" << i << ": "  << param->getId() << endl;
		pplugin = static_cast<SpatialParameterPlugin*>(param->getPlugin("spatial"));
		if (pplugin->isSetSpatialSymbolReference()) {
			cout << "Parameter" << i << "  SpRefId: "  << pplugin->getSpatialSymbolReference()->getSpatialRef() << endl;
		}
		if (pplugin->isSetDiffusionCoefficient()) {
			cout << "Diff_" << i << "  SpeciesVarId: "  << pplugin->getDiffusionCoefficient()->getVariable() << endl;
			cout << "Diff_" << i << "  Type: "  << DiffusionKind_toString(pplugin->getDiffusionCoefficient()->getType()) << endl;
      for (unsigned int j = 0; j < pplugin->getDiffusionCoefficient()->getNumCoordinateReferences(); ++j)
        cout << "Diff_" << i << "  SpCoordIndex  " << j << " : " << CoordinateKind_toString(pplugin->getDiffusionCoefficient()->getCoordinateReference(j) ->getCoordinate()) << endl;
		}
		if (pplugin->isSetAdvectionCoefficient()) {
			cout << "Adv_" << i << "  SpeciesVarId: "  << pplugin->getAdvectionCoefficient()->getVariable() << endl;
			cout << "Adv_" << i << "  SpCoordIndex: "  << CoordinateKind_toString(pplugin->getAdvectionCoefficient()->getCoordinate()) << endl;
		}
		if (pplugin->isSetBoundaryCondition()) {
			cout << "BC_" << i << "  SpeciesVarId: "  << pplugin->getBoundaryCondition()->getVariable() << endl;
			cout << "BC_" << i << "  SpCoordBoundary: "  << pplugin->getBoundaryCondition()->getCoordinateBoundary() << endl;
			cout << "BC_" << i << "  SpBoundaryType: "  << pplugin->getBoundaryCondition()->getType() << endl;
		}
	}

	Reaction *rxn;
	SpatialReactionPlugin* rplugin;
	for (unsigned int i = 0; i < model2->getNumReactions(); i++) {
		rxn = model2->getReaction(i);
		cout << "Reaction" << i << ": "      << rxn->getId()      << endl;
		rplugin = static_cast<SpatialReactionPlugin*>(rxn->getPlugin("spatial"));
		if (rplugin->getIsLocal()) {
			cout << "rxn" << i << "  isLocal: "  << rplugin->getIsLocal() << endl;
		}
	}

	Rule *rule;
	for (unsigned int i = 0; i < model2->getNumRules(); i++) {
		rule = model2->getRule(i);
		cout << "Rule" << i << ": "      << rule->getVariable()      << endl;
	}

	//
	// Get a SpatialModelPlugin object plugged in the model object.
	//
	// The type of the returned value of SBase::getPlugin() function is 
	// SBasePlugin*, and thus the value needs to be cast for the 
	// corresponding derived class.
	//
	SpatialModelPlugin* mplugin2;
	mplugin2 = static_cast<SpatialModelPlugin*>(model2->getPlugin("spatial"));
	cout << "URI: "      << mplugin2->getURI()      << endl;
	cout << "prefix: "      << mplugin2->getPrefix()      << endl;

	// get a Geometry object via SpatialModelPlugin object.
	Geometry* geometry2 = mplugin2->getGeometry();
	cout << "Geometry coordSystem: "      << geometry2->getCoordinateSystem()      << endl;
    
	// get a CoordComponent object via the Geometry object.	
	CoordinateComponent* coordComp = geometry2->getCoordinateComponent(0);
	std::cout << "CoordComponent Id: " << coordComp->getId() << std::endl;
  std::cout << "CoordComponent type: " << CoordinateKind_toString( coordComp->getType()) << std::endl;
	std::cout << "CoordComponent sbmlUnit: " << coordComp->getUnit() << std::endl;
  if (coordComp->isSetBoundaryMin())
  {
  Boundary* minX = coordComp->getBoundaryMin();
	std::cout << "minX name: " << minX->getId() << std::endl;
	std::cout << "minX value: " << minX->getValue() << std::endl;
  }
  if (coordComp->isSetBoundaryMax())
  {
//.........这里部分代码省略.........

开发者ID:kirichoi，项目名称:roadrunner，代码行数:101，代码来源:example1.cpp

示例2: readSpatialSBML

void readSpatialSBML() {
	SBMLDocument *document2 = readSBML("spatial_example0.xml");
  
	Model *model2 = document2->getModel();
	Compartment *comp;
	SpatialCompartmentPlugin* cplugin;
	RequiredElementsSBasePlugin* reqplugin;
	for (unsigned int i = 0; i < model2->getNumCompartments(); i++) {
		comp = model2->getCompartment(i);
		cout << "Compartment" << i << ": "  << comp->getId() << endl;
		reqplugin = static_cast<RequiredElementsSBasePlugin*>(comp->getPlugin("req"));
		if (!reqplugin->getMathOverridden().empty()) {
			cout << "Comp" << i << "  req mathOverridden: "  << reqplugin->getMathOverridden() << endl;
		}
		cplugin = static_cast<SpatialCompartmentPlugin*>(comp->getPlugin("spatial"));
		if (cplugin->getCompartmentMapping()->isSetSpatialId()) {
			cout << "Comp" << i << "  CMSpId: "  << cplugin->getCompartmentMapping()->getSpatialId() << endl;
			cout << "Comp" << i << "  CM_Comp: "  << cplugin->getCompartmentMapping()->getCompartment() << endl;
			cout << "Comp" << i << "  CM_DType: "  << cplugin->getCompartmentMapping()->getDomainType() << endl;
			cout << "Comp" << i << "  CM_UnitSz: "  << cplugin->getCompartmentMapping()->getUnitSize() << endl;
		}
	}

	Species *sp;
	SpatialSpeciesRxnPlugin* srplugin;
	for (unsigned int i = 0; i < model2->getNumSpecies(); i++) {
		sp = model2->getSpecies(i);
		cout << "Species" << i << ": "      << sp->getId()      << endl;
		srplugin = static_cast<SpatialSpeciesRxnPlugin*>(sp->getPlugin("spatial"));
		if (srplugin->getIsSpatial()) {
			cout << "species" << i << "  isSpatial: "  << srplugin->getIsSpatial() << endl;
		}
	}

	Parameter *param;
	SpatialParameterPlugin* pplugin;
	for (unsigned int i = 0; i < model2->getNumParameters(); i++) {
		param = model2->getParameter(i);
		cout << "Parameter" << i << ": "  << param->getId() << endl;
		reqplugin = static_cast<RequiredElementsSBasePlugin*>(param->getPlugin("req"));
		if (!reqplugin->getMathOverridden().empty()) {
			cout << "Parameter" << i << "  req mathOverridden: "  << reqplugin->getMathOverridden() << endl;
		}
		pplugin = static_cast<SpatialParameterPlugin*>(param->getPlugin("spatial"));
		if (pplugin->getSpatialSymbolReference()->isSetSpatialId()) {
			cout << "Parameter" << i << "  SpRefId: "  << pplugin->getSpatialSymbolReference()->getSpatialId() << endl;
			cout << "Parameter" << i << "  SpRefType: "  << pplugin->getSpatialSymbolReference()->getType() << endl;
		}
		if (pplugin->getDiffusionCoefficient()->isSetVariable()) {
			cout << "Diff_" << i << "  SpeciesVarId: "  << pplugin->getDiffusionCoefficient()->getVariable() << endl;
			cout << "Diff_" << i << "  SpCoordIndex: "  << pplugin->getDiffusionCoefficient()->getCoordinateIndex() << endl;
		}
		if (pplugin->getAdvectionCoefficient()->isSetVariable()) {
			cout << "Adv_" << i << "  SpeciesVarId: "  << pplugin->getAdvectionCoefficient()->getVariable() << endl;
			cout << "Adv_" << i << "  SpCoordIndex: "  << pplugin->getAdvectionCoefficient()->getCoordinateIndex() << endl;
		}
		if (pplugin->getBoundaryCondition()->isSetVariable()) {
			cout << "BC_" << i << "  SpeciesVarId: "  << pplugin->getBoundaryCondition()->getVariable() << endl;
			cout << "BC_" << i << "  SpCoordBoundary: "  << pplugin->getBoundaryCondition()->getCoordinateBoundary() << endl;
			cout << "BC_" << i << "  SpBoundaryType: "  << pplugin->getBoundaryCondition()->getType() << endl;
		}
	}

	Reaction *rxn;
	for (unsigned int i = 0; i < model2->getNumReactions(); i++) {
		rxn = model2->getReaction(i);
		cout << "Reaction" << i << ": "      << rxn->getId()      << endl;
		srplugin = static_cast<SpatialSpeciesRxnPlugin*>(rxn->getPlugin("spatial"));
		if (srplugin->getIsLocal()) {
			cout << "rxn" << i << "  isLocal: "  << srplugin->getIsLocal() << endl;
		}
	}

	Rule *rule;
	for (unsigned int i = 0; i < model2->getNumRules(); i++) {
		rule = model2->getRule(i);
		cout << "Rule" << i << ": "      << rule->getVariable()      << endl;
	}

	//
	// Get a SpatialModelPlugin object plugged in the model object.
	//
	// The type of the returned value of SBase::getPlugin() function is 
	// SBasePlugin*, and thus the value needs to be cast for the 
	// corresponding derived class.
	//
	SpatialModelPlugin* mplugin2;
	mplugin2 = static_cast<SpatialModelPlugin*>(model2->getPlugin("spatial"));
	cout << "URI: "      << mplugin2->getURI()      << endl;
	cout << "prefix: "      << mplugin2->getPrefix()      << endl;

	// get a Geometry object via SpatialModelPlugin object.
	Geometry* geometry2 = mplugin2->getGeometry();
	cout << "Geometry coordSystem: "      << geometry2->getCoordinateSystem()      << endl;
    
	// get a CoordComponent object via the Geometry object.	
	CoordinateComponent* coordComp = geometry2->getCoordinateComponent(0);
	std::cout << "CoordComponent spatialId: " << coordComp->getSpatialId() << std::endl;
	std::cout << "CoordComponent compType: " << coordComp->getComponentType() << std::endl;
	std::cout << "CoordComponent sbmlUnit: " << coordComp->getSbmlUnit() << std::endl;
//.........这里部分代码省略.........

开发者ID:kirichoi，项目名称:roadrunner，代码行数:101，代码来源:spatialExtTest.cpp

示例3: readSBMLFromFile

END_TEST


START_TEST (test_SpatialExtension_read_L3V1V1_defaultNS)
{
    string file = TestDataDirectory;
    file += "/read_L3V1V1_defaultNS.xml";

    SBMLDocument *document = readSBMLFromFile(file.c_str());
    string sbmlDoc = writeSBMLToStdString(document);
    Model *model = document->getModel();

    //document->printErrors();

    fail_unless(model != NULL);
    //fail_unless(document->getNumErrors() == 0);

    // model : compartment
    fail_unless(model->getNumCompartments() == 1);

    Compartment *comp = model->getCompartment(0);

    // compartment : compartmentMapping
    SpatialCompartmentPlugin* cplugin = static_cast<SpatialCompartmentPlugin*>(comp->getPlugin("spatial"));
    fail_unless(cplugin != NULL);

    CompartmentMapping *cMapping = cplugin->getCompartmentMapping();
    if (cMapping->isSetId()) {
        fail_unless(cMapping->getId()		 == "compMap1");
        fail_unless(cMapping->getDomainType()	 == "dtype1");
        fail_unless(cMapping->getUnitSize()		 == 1);
    }

    // model : species 1
    fail_unless(model->getNumSpecies() == 2);

    Species *sp = model->getSpecies(0);

    SpatialSpeciesPlugin* srplugin = static_cast<SpatialSpeciesPlugin*>(sp->getPlugin("spatial"));
    fail_unless(srplugin != NULL);
    fail_unless(srplugin->getIsSpatial() == true);

    // model : species 2
    sp = model->getSpecies(1);
    srplugin = static_cast<SpatialSpeciesPlugin*>(sp->getPlugin("spatial"));
    fail_unless(srplugin != NULL);
    fail_unless(srplugin->getIsSpatial() == true);

    // model : parameters (species diffusion, advection coeffs, species boundary conditions, coordinate components from Geometry
    fail_unless(model->getNumParameters() == 5);



    // parameter 0 : diffusionCoefficient
    Parameter *param = model->getParameter(0);
    SpatialParameterPlugin* pplugin = static_cast<SpatialParameterPlugin*>(param->getPlugin("spatial"));
    fail_unless(pplugin != NULL);
    fail_unless(pplugin->isSpatialParameter() == true);
    fail_unless(pplugin->getType() == SBML_SPATIAL_DIFFUSIONCOEFFICIENT);
    DiffusionCoefficient *diffCoeff = pplugin->getDiffusionCoefficient();
    fail_unless(diffCoeff->getVariable()		== "ATPc");
    fail_unless(diffCoeff->isSetCoordinateReference1());
    fail_unless(diffCoeff->getCoordinateReference1() == SPATIAL_COORDINATEKIND_CARTESIAN_X);

    // parameter 1 : advectionCoefficient
    param = model->getParameter(1);
    pplugin = static_cast<SpatialParameterPlugin*>(param->getPlugin("spatial"));
    fail_unless(pplugin != NULL);
    fail_unless(pplugin->isSpatialParameter() == true);
    fail_unless(pplugin->getType() == SBML_SPATIAL_ADVECTIONCOEFFICIENT);
    AdvectionCoefficient *advCoeff = pplugin->getAdvectionCoefficient();
    fail_unless(advCoeff->getVariable()		== "ATPc");
    fail_unless(advCoeff->getCoordinate() == SPATIAL_COORDINATEKIND_CARTESIAN_X);

    // parameter 2 : boundaryCondition X
    param = model->getParameter(2);
    pplugin = static_cast<SpatialParameterPlugin*>(param->getPlugin("spatial"));
    fail_unless(pplugin != NULL);
    fail_unless(pplugin->isSpatialParameter() == true);
    fail_unless(pplugin->getType() == SBML_SPATIAL_BOUNDARYCONDITION);
    BoundaryCondition *bc = pplugin->getBoundaryCondition();
    fail_unless(bc->getVariable()		   == "ATPc");
    fail_unless(bc->getCoordinateBoundary() == "Xmin");
    fail_unless(bc->getType() == SPATIAL_BOUNDARYKIND_DIRICHLET);

    // parameter 3 : SpatialSymbolReference (coordinateComponent from geometry)
    param = model->getParameter(3);
    pplugin = static_cast<SpatialParameterPlugin*>(param->getPlugin("spatial"));
    fail_unless(pplugin != NULL);
    SpatialSymbolReference *spSymRef = pplugin->getSpatialSymbolReference();
    fail_unless(spSymRef->getSpatialRef() == "coordComp1");

    // model : reaction
    fail_unless(model->getNumReactions() == 1);

    Reaction *rxn = model->getReaction(0);
    SpatialReactionPlugin* rplugin = static_cast<SpatialReactionPlugin*>(rxn->getPlugin("spatial"));
    fail_unless(rplugin != NULL);
    fail_unless(rplugin->getIsLocal() == true);

//.........这里部分代码省略.........

开发者ID:sys-bio，项目名称:libroadrunner-deps，代码行数:101，代码来源:TestReadSpatialExtension.cpp

注：本文中的Domain::getDomainType方法示例由纯净天空整理自Github/MSDocs等开源代码及文档管理平台，相关代码片段筛选自各路编程大神贡献的开源项目，源码版权归原作者所有，传播和使用请参考对应项目的License；未经允许，请勿转载。