本文整理汇总了C++中DistanceMatrix::createSimilarityMatrixCodes方法的典型用法代码示例。如果您正苦于以下问题：C++ DistanceMatrix::createSimilarityMatrixCodes方法的具体用法？C++ DistanceMatrix::createSimilarityMatrixCodes怎么用？C++ DistanceMatrix::createSimilarityMatrixCodes使用的例子？那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类DistanceMatrix的用法示例。
在下文中一共展示了DistanceMatrix::createSimilarityMatrixCodes方法的1个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的C++代码示例。
示例1: main
int main(int argc, char **argv)
{
welcome();
defineverbose();
filenames.clear();
ClustalWInitializers();
clustalw::ClustalWResources *resources = clustalw::ClustalWResources::Instance();
resources->setPathToExecutable(string(argv[0]));
setUserParameters();
InputFile start;// object reads from an input file and creates a new file
start.run();
string offendingSeq;
Clustal* clustalObj;
clustalObj = new clustalw::Clustal();
int u = clustalObj->sequenceInput(false, &offendingSeq);
string phylipName;
clustalObj->align(&phylipName);
AminoAcidFrequency Table;
Table.openFile("TEST-OutputFile.aln");
vector<ProteinSequence> p1;
p1 = start.getProteinData();
Table.generateAminoAcidTables(p1);
p1.clear();
p1 = Table.getFinalSeqs();
DistanceMatrix dm;
dm.createDistanceTableCodes(p1);
dm.createSimilarityMatrixCodes(p1);
dm.createDistanceTableColours(p1);
dm.createSimilarityMatrixColours(p1);
VerticalPosition vp;
vp.run(p1);
cout<< "\nPROCESS COMPLETED!\nThe following files were created:\n" << endl;
for ( size_t i = 0; i < filenames.size(); i++ )
{
cout << "\t" << i+1 << ". " << filenames[i] << endl;
}
return 0;
}