C++ AliReconstruction类代码示例

void rec() {
  AliReconstruction reco;

  reco.SetWriteESDfriend();
  reco.SetWriteAlignmentData();

  reco.SetDefaultStorage(Form("local://%s/OCDB", gSystem->pwd()));
  reco.SetSpecificStorage("GRP/GRP/Data",
			  Form("local://%s",gSystem->pwd()));
  reco.SetRunPlaneEff(kTRUE);

  //reco.SetRunQA("ALL:ALL") ;
  
  reco.SetQARefDefaultStorage("local://$ALICE_ROOT/QAref") ;
  
  for (Int_t det = 0 ; det < AliQA::kNDET ; det++) {
    reco.SetQACycles((AliQAv1::DETECTORINDEX_t)det, 999) ;
    reco.SetQAWriteExpert((AliQAv1::DETECTORINDEX_t)det) ; 
  }
  
  TStopwatch timer;
  timer.Start();
  reco.Run();
  timer.Stop();
  timer.Print();
}

void Rec(TString file="raw.root")
{
  // Reconstruction of RAW data from the input file raw.root
  // Boris Polichtchouk, 13 Mar 2008

  //AliCDBManager::Instance()->SetDefaultStorage("local://$ALICE_ROOT/OCDB");
  //AliCDBManager::Instance()->SetSpecificStorage("PHOS/*","local://BadMap");

  AliReconstruction rec ;
  rec.SetRunTracking("") ;
  rec.SetRunVertexFinder(kFALSE) ; 
  rec.SetRunLocalReconstruction("PHOS") ;
  rec.SetFillESD("PHOS") ;

  //Set rec. parameters different from the default ones.
  AliPHOSRecoParam* recEmc = new AliPHOSRecoParamEmc();
  recEmc->SetSubtractPedestals(kTRUE);
  recEmc->SetMinE(0.01);                     //Minimal Digit energy
  recEmc->SetClusteringThreshold(0.02);      //Minimal cluster seed energy
  recEmc->SetDecoderVersion("v1");           //Comment out to choose Max-Ped version
  recEmc->SetOldRCUFormat(kTRUE);

  AliPHOSReconstructor::SetRecoParamEmc(recEmc);

  rec.SetInput(file.Data());  // read RAW data
  rec.SetNumberOfEventsPerFile(5000);	
  rec.Run();


}

void rec() {
	//  AliLog::SetGlobalDebugLevel(10);
	AliCDBManager * man = AliCDBManager::Instance();
	man->SetDefaultStorage("alien://Folder=/alice/simulation/2008/v4-10-Release/Residual/");
	man->SetSpecificStorage("EMCAL/*","local://DB");
	
	AliReconstruction reco;
	AliMagFMaps* field = new AliMagFMaps("Maps","Maps", 2, 1., 10., AliMagFMaps::k5kG);
	AliTracker::SetFieldMap(field,kTRUE);
	reco.SetUniformFieldTracking(kFALSE);
	reco.SetWriteESDfriend();
	reco.SetWriteAlignmentData();
  
	AliTPCRecoParam * tpcRecoParam = AliTPCRecoParam::GetLowFluxParam();
	AliTPCReconstructor::SetRecoParam(tpcRecoParam);
	AliTPCReconstructor::SetStreamLevel(0);
	reco.SetRunReconstruction("ITS TPC TRD TOF HMPID PHOS EMCAL MUON T0 VZERO FMD PMD ZDC");
	//reco.SetInput("raw.root") ;
	//AliPHOSRecoParam* recEmc = new AliPHOSRecoParamEmc();
//	recEmc->SetSubtractPedestals(kFALSE);
//	AliPHOSReconstructor::SetRecoParamEmc(recEmc);  
	reco.SetRunQA(kFALSE) ; 

	TStopwatch timer;
	timer.Start();
	reco.Run();
	timer.Stop();
	timer.Print();
}

void rec() {

  AliReconstruction reco;

    reco.SetRunVertexFinder(kFALSE) ;
    reco.SetRunV0Finder(kFALSE) ;
    reco.SetRunMultFinder(kFALSE) ;

   AliQAManager::QAManager(AliQAv1::kSIMMODE) ;


  reco.SetCDBSnapshotMode("Sim/OCDBrec.root");
  reco.SetRunReconstruction("PHOS") ;
  reco.SetRunQA(":") ;
  reco.SetRunGlobalQA(kFALSE) ;

  TStopwatch timer;
  timer.Start();
  reco.Run();
  timer.Stop();
  timer.Print();
}

void rec() {
  AliReconstruction reco;

  reco.SetWriteESDfriend();
  reco.SetWriteAlignmentData();

  reco.SetDefaultStorage("local://$ALICE_ROOT/OCDB");
  reco.SetSpecificStorage("GRP/GRP/Data",
			  Form("local://%s",gSystem->pwd()));
  reco.SetRunPlaneEff(kTRUE);

  reco.SetFractionFriends(1.);

  TStopwatch timer;
  timer.Start();
  reco.Run();
  timer.Stop();
  timer.Print();
}

void AliPMDRec()
{
  // This macro for the full reconstruction chain. Only PMD is ON.
  //
  AliCDBManager * man = AliCDBManager::Instance();
  man->SetDefaultStorage("local://$ALICE_ROOT/OCDB");
  man->SetRun(0);


  Int_t firstEvent = 0;
  Int_t lastEvent = 1;

  AliReconstruction rec;
  rec.SetRunReconstruction("PMD");
  rec.SetRunVertexFinder(kFALSE);
  rec.SetFillESD("PMD");
  rec.SetFillTriggerESD(kFALSE);

  //  rec.Run("./");
  //  rec.Run("raw.date");
  rec.Run("raw_6b_61.root",firstEvent,lastEvent);

}

void trackhisto(const char *filename, const char *cdbURI, int minEvent=-1, int maxEvent=-1, Bool_t bTracklets=kFALSE){

  if(!gSystem->AccessPathName("galice.root")){
    cerr << "Remove galice.root or run in a different folder." << endl;
    return;
  }

  if (!filename) {
    cerr << "please specify input or run without arguments" << endl;
    return;
  }
  

  ////////////////////////////////////////////////////////////////////
  //
  // init the HLT system in order to define the analysis chain below
  //
  ////////////////////////////////////////////////////////////////////
 
  
  AliHLTSystem *gHLT = AliHLTPluginBase::GetInstance();
 
  int iMinSlice =  0;
  int iMaxSlice = 35;
  int iMinPart  =  0;
  int iMaxPart  =  5;
  
  TString tracklets;
  
  for(int slice=iMinSlice; slice<=iMaxSlice; slice++){
      
      TString trackerInput;      
      for(int part=iMinPart; part<=iMaxPart; part++){
          
	  TString arg, publisher, cf;
          
          // raw data publisher components
          int ddlno=768;
          if (part>1) ddlno+=72+4*slice+(part-2);
          else ddlno+=2*slice+part;
      
          arg.Form("-minid %d -datatype 'DDL_RAW ' 'TPC '  -dataspec 0x%02x%02x%02x%02x -verbose", ddlno, slice, slice, part, part);
          publisher.Form("DP_%02d_%d", slice, part);
          AliHLTConfiguration pubconf(publisher.Data(), "AliRawReaderPublisher", NULL , arg.Data());

          // cluster finder components
          cf.Form("CF_%02d_%d", slice, part);
          AliHLTConfiguration cfconf(cf.Data(), "TPCClusterFinder32Bit", publisher.Data(), "");
     
          if (trackerInput.Length()>0) trackerInput+=" ";
          trackerInput+=cf;     
    }
    
    TString tracker, converted_tracklet;
    // tracker components
    tracker.Form("TR_%02d", slice);
    converted_tracklet.Form("CONVTR_%02d", slice);
    AliHLTConfiguration trackerconf(tracker.Data(), "TPCCATracker", trackerInput.Data(), "");
    AliHLTConfiguration convertedconf(converted_tracklet.Data(), "TPCCATrackerOutputConverter", tracker.Data(), "");    
       
    if (tracklets.Length()>0) tracklets+=" ";
    tracklets+=converted_tracklet;
  }
   
  TString histoInput;
   
  if(bTracklets==kTRUE){
     if(histoInput.Length()>0) 
     histoInput+=" ";
     histoInput+=tracklets;
     
     AliHLTConfiguration tracklethiconf("tracklethi", "TPCTrackHisto", histoInput.Data(), "");
     AliHLTConfiguration trackletrwfconf("trackletrfw", "ROOTFileWriter", "tracklethi", "-datafile TrackletHisto -concatenate-events -overwrite");
  }
  else {
     if(histoInput.Length()>0) 
     histoInput+=" ";
     histoInput+="TPC-clusters";
     histoInput+=" ";
     histoInput+="TPC-globalmerger";
  
     AliHLTConfiguration trhiconf("trhi", "TPCTrackHisto", histoInput.Data(), "");
     AliHLTConfiguration rwfconf("rfw", "ROOTFileWriter", "trhi", "-datafile TrackHisto -concatenate-events -overwrite");
  }


  AliReconstruction rec;

  rec.SetRunQA(":");
  rec.SetInput(filename);
  
  // connect to the GRID if we use a file or OCDB from the GRID
  TString struri  = cdbURI;
  TString strfile = filename;
  if(struri.BeginsWith("raw://") ||  strfile.Contains("://") && !strfile.Contains("local://")){
     TGrid::Connect("alien");
  }
  
  AliCDBManager *man = AliCDBManager::Instance();
  man->SetDefaultStorage(cdbURI);
//.........这里部分代码省略.........

//.........这里部分代码省略.........
  int iMaxPart=5;
  TString writerInput;
  TString mergerInput;
  TString histoInput;
  TString histogramHandlerInputClusterFinder;
  TString cdumpInput;
  for (int slice=iMinSlice; slice<=iMaxSlice; slice++) {
    TString trackerInput;
    for (int part=iMinPart; part<=iMaxPart; part++) {
      TString arg, publisher, cf;
      TString clusterHistoOutput;
      // raw data publisher components
      int ddlno=768;
      if (part>1) ddlno+=72+4*slice+(part-2);
      else ddlno+=2*slice+part;
      arg.Form("-minid %d -datatype 'DDL_RAW ' 'TPC '  -dataspec 0x%02x%02x%02x%02x -verbose", ddlno, slice, slice, part, part);
      publisher.Form("DP_%02d_%d", slice, part);
      new AliHLTConfiguration(publisher.Data(), "AliRawReaderPublisher", NULL , arg.Data());

      // cluster finder components
      cf.Form("CF_%02d_%d", slice, part);
      new AliHLTConfiguration(cf.Data(), "TPCClusterFinder32Bit", publisher.Data(), "-solenoidBz -5");

      if (trackerInput.Length()>0) trackerInput+=" ";
      trackerInput+=cf;
      if (writerInput.Length()>0) writerInput+=" ";
      writerInput+=cf;
      if (histoInput.Length()>0) histoInput+=" ";
      histoInput+=cf;
      if (cdumpInput.Length()>0) cdumpInput+=" ";
      cdumpInput+=cf;
    }
    TString tracker;
    // tracker components
    tracker.Form("TR_%02d", slice);
    new AliHLTConfiguration(tracker.Data(), "TPCCATracker", trackerInput.Data(), "");

    if (writerInput.Length()>0) writerInput+=" ";
    writerInput+=tracker;
    if (mergerInput.Length()>0) mergerInput+=" ";
    mergerInput+=tracker;
    //add all slice tracks to histo input
    //if (histoInput.Length()>0) histoInput+=" ";
    //histoInput+=tracker;
  }

  // GlobalMerger component
    new AliHLTConfiguration("globalmerger","TPCCAGlobalMerger",mergerInput.Data(),"");
  
    //add all global tracks to histo input
  if (histoInput.Length()>0) histoInput+=" ";
  histoInput+="globalmerger";
  
  // specify whether to write all blocks separately or merge the tracks
  // and convert to ESD
  bool writeBlocks=false;

  // the esd converter configuration
  new AliHLTConfiguration("esd-converter", "GlobalEsdConverter"   , "globalmerger", "-fitTracksToVertex 1");
  
  new AliHLTConfiguration("global-vertexer", "GlobalVertexer"   , "esd-converter", "");
  
  new AliHLTConfiguration("v0HistoOut", "V0Histo"   , "global-vertexer", "");

  new AliHLTConfiguration("GVhistorootfile", "ROOTFileWriter", "global-vertexer" , "-datafile primaryVertexHistograms -concatenate-events -overwrite");
  
  new AliHLTConfiguration("v0historootfile", "ROOTFileWriter", "v0HistoOut" , "-datafile secondaryVertexHistograms -concatenate-events -overwrite");

  option+="v0historootfile";

  option+=",GVhistorootfile";

  ///////////////////////////////////////////////////////////////////////////////////////////////////
  //
  // Init and run the reconstruction
  // All but HLT reconstructio is switched off
  //
  AliReconstruction rec;


  rec.SetDefaultStorage("local://$ALICE_ROOT/OCDB");
  // rec.SetDefaultStorage("local://$HOME/HCDB"); 
  //rec.SetSpecificStorage("GRP/GRP/Data",
  //			 Form("local://%s",gSystem->pwd()));

  //  rec.SetSpecificStorage("GRP/GRP/Data","local:///opt/HLT-public/OCDB/LHC09c");
  //  rec.SetSpecificStorage("GRP/CTP/Config","local:///opt/HLT-public/OCDB/LHC09c");
  //  rec.SetSpecificStorage("GRP/CTP/Config", "local:///opt/HLT-public/rec/LHC09c/");

  rec.SetInput(input);
  rec.SetRunVertexFinder(kFALSE);
  rec.SetRunReconstruction("HLT");  //add TPC for comparison
  rec.SetLoadAlignFromCDB(0);
  rec.SetRunQA(":");
  rec.SetOption("HLT",option);
  // switch off cleanESD
  rec.SetCleanESD(kFALSE);
  //  rec.SetEventRange(0, 100);
  rec.Run();
}

//.........这里部分代码省略.........
  ///////////////////////////////////////////////////////////////////////////////////////////////////
  //
  // define the analysis chain to be run
  //
    
  int iMinSlice=0; 
  int iMaxSlice=35;
  int iMinPart=0;
  int iMaxPart=5;

  TString histogramHandlerInput1;
  TString histogramHandlerInput2;
  TString histogramHandlerOutput1;
  TString histogramHandlerOutput2;
  TString rootFileWriterInput1;
  TString rootFileWriterInput2;

  for (int slice=iMinSlice; slice<=iMaxSlice; slice++) {
    for (int part=iMinPart; part<=iMaxPart; part++) {
      TString clusterFinderOutput1;
      TString clusterFinderOutput2;
      TString clusterHistoInput1;
      TString clusterHistoInput2;
      TString clusterHistoOutput1;
      TString clusterHistoOutput2;
      TString arg, publisher;
      // digit publisher components
      int ddlno=768;
      if (part>1) ddlno+=72+4*slice+(part-2);
      else ddlno+=2*slice+part;
      arg.Form("-minid %d -datatype 'DDL_RAW ' 'TPC '  -dataspec 0x%02x%02x%02x%02x", ddlno, slice, slice, part, part);

      publisher.Form("DP_%02d_%d", slice, part);
      AliHLTConfiguration pubconf(publisher.Data(), "AliRawReaderPublisher", NULL , arg.Data());

      // first clusterfinder
      clusterFinderOutput1.Form("CF1_%02d_%d", slice, part);
      AliHLTConfiguration cfconf(clusterFinderOutput1.Data(), "TPCClusterFinderDecoder", publisher.Data(), "-timebins 446");//-timebins set to simulated data
      if (clusterHistoInput1.Length()>0) clusterHistoInput1+=" ";
      clusterHistoInput1+=clusterFinderOutput1;

      // second clusterfinder
      clusterFinderOutput2.Form("CF2_%02d_%d", slice, part);
      AliHLTConfiguration cfconf(clusterFinderOutput2.Data(), "TPCClusterFinderDecoder", publisher.Data(), "-timebins 446");//-timebins set to simulated data
      if (clusterHistoInput2.Length()>0) clusterHistoInput2+=" ";
      clusterHistoInput2+=clusterFinderOutput2;
    

      // first cluster histo component
      clusterHistoOutput1.Form("CH1_%02d_%d", slice, part);
      AliHLTConfiguration cfconf(clusterHistoOutput1.Data(), "TPCClusterHisto", clusterHistoInput1.Data(), "");
      if (histogramHandlerInput1.Length()>0) histogramHandlerInput1+=" ";
      histogramHandlerInput1+=clusterHistoOutput1;

      //second cluster histo component
      clusterHistoOutput2.Form("CH2_%02d_%d", slice, part);
      AliHLTConfiguration cfconf(clusterHistoOutput2.Data(), "TPCClusterHisto", clusterHistoInput2.Data(), "");
      if (histogramHandlerInput1.Length()>0) histogramHandlerInput1+=" ";
      histogramHandlerInput1+=clusterHistoOutput2;
      if (histogramHandlerInput2.Length()>0) histogramHandlerInput2+=" ";
      histogramHandlerInput2+=clusterHistoOutput2;

    }
  }
  
  // first histogram handler component
  histogramHandlerOutput1.Form("HH1_%02d_%d", slice, part);
  AliHLTConfiguration cfconf(histogramHandlerOutput1.Data(), "TPCHistogramHandler", histogramHandlerInput1.Data(), "-use-general");
  if (rootFileWriterInput1.Length()>0) rootFileWriterInput1+=" ";
  rootFileWriterInput1+=histogramHandlerOutput1;
  
  // second histogram handler component
  histogramHandlerOutput2.Form("HH2_%02d_%d", slice, part);
  AliHLTConfiguration cfconf(histogramHandlerOutput2.Data(), "TPCHistogramHandler", histogramHandlerInput2.Data(), "-use-general");
  if (rootFileWriterInput2.Length()>0) rootFileWriterInput2+=" ";
  rootFileWriterInput2+=histogramHandlerOutput2;
  
  AliHLTConfiguration rootFileWriter1("RootFileWriter1", "ROOTFileWriter", rootFileWriterInput1.Data() , "-datafile histogramHandlerFile1");

  AliHLTConfiguration rootFileWriter2("RootFileWriter2", "ROOTFileWriter", rootFileWriterInput2.Data() , "-datafile histogramHandlerFile2");


  ///////////////////////////////////////////////////////////////////////////////////////////////////
  //
  // Init and run the reconstruction
  // All but HLT reconstruction is switched off
  //
  AliReconstruction rec;
  rec.SetInput(input);
  rec.SetRunVertexFinder(kFALSE);
  rec.SetRunLocalReconstruction("HLT");
  rec.SetRunTracking("");
  rec.SetLoadAlignFromCDB(0);
  rec.SetRunQA(":");
  //rec.SetFillESD("HLT");
  rec.SetFillESD("");
  rec.SetFillTriggerESD(false);
  rec.SetOption("HLT", "libAliHLTUtil.so libAliHLTRCU.so libAliHLTTPC.so loglevel=0x7c chains=RootFileWriter1,RootFileWriter2");
  rec.Run();
}

void rec(const char *filename="raw.root", const char* options="")
{
  /////////////////////////////////////////////////////////////////////////////////////////
  //
  // Reconstruction script for RAW data
  //
  /////////////////////////////////////////////////////////////////////////////////////////

  
  AliReconstruction rec;
  // Set reconstruction flags (skip detectors here if neded with -<detector name>

  // do we extract the TPC recpoints in advance
  Int_t preclustTPC = TString(gSystem->Getenv("preclusterizeTPC")).Atoi();
  Bool_t noTPCLocalRec = preclustTPC==1;
  if (noTPCLocalRec) printf("preclustTPC = %d: TPC local reconstruction assumed to be already done\n", preclustTPC);
  else printf("preclustTPC = %d: TPC local reconstruction assumed to NOT be already done\n", preclustTPC);
  //
  if (noTPCLocalRec) {
    rec.SetRunReconstruction("ALL -HLT");
    rec.SetRunLocalReconstruction("ALL -TPC -HLT");
  }
  else {
    rec.SetRunLocalReconstruction("ALL");
  } 

  // Upload CDB entries from the snapshot (local root file) if snapshot exist
  if (gSystem->AccessPathName("OCDB.root", kFileExists)==0) {        
    rec.SetDefaultStorage("local://");
    rec.SetCDBSnapshotMode("OCDB.root");
  }
  else {
    // setup ocdb by custom (if any) or default settings
    if (gSystem->AccessPathName("OCDBconfig.C", kFileExists)==0) {
      gROOT->Macro("OCDBconfig.C");
    }
    else { // default settings
      AliCDBManager* man = AliCDBManager::Instance();
      man->SetRaw(kTRUE);
    }
    //
    TString cdbMode = gSystem->Getenv("OCDB_SNAPSHOT_CREATE");
    if (cdbMode == "kTRUE") {
      gROOT->LoadMacro("$ALIDPG_ROOT/MC/CreateSnapshot.C");
      CreateSnapshot("OCDB.root",filename);
      return;
    }
  }



  // removing apparently pile-up clusters to speadup reconstruction
  const double kZOutSectorCut = 3.; // cut on clusters on wrong side of CE (added to extendedRoadZ)
  AliTPCReconstructor::SetZOutSectorCut(kZOutSectorCut);


  // QA options
  //  rec.SetRunQA("Global:ESDs") ;
  //  rec.SetRunQA(":") ;
  //  rec.SetRunQA("ALL:ALL") ;
  rec.SetRunQA("Global MUON:ALL") ;
  rec.SetQARefDefaultStorage("local://$ALICE_ROOT/QAref") ;

  // AD stuff (see ALIROOT-6663)

  // rec.SetOption("AD", "+SaturationCorrection"); // --> not needed anymore, see https://alice.its.cern.ch/jira/browse/ALIROOT-6778

  // AliReconstruction settings
  rec.SetWriteESDfriend(kTRUE);
  rec.SetWriteAlignmentData();
  TString filenamewithopt = filename;
  filenamewithopt += options;
  rec.SetInput(filenamewithopt.Data());
  rec.SetUseTrackingErrorsForAlignment("ITS");

  // Specific AD storage, see https://alice.its.cern.ch/jira/browse/ALIROOT-6056
  //  rec.SetSpecificStorage("AD/Calib/TimeSlewing", "alien://Folder=/alice/simulation/2008/v4-15-Release/Ideal");

  // switch off cleanESD
  rec.SetCleanESD(kFALSE);

  //Ignore SetStopOnError
  rec.SetStopOnError(kFALSE);

  // Delete recpoints
  // Remove recpoints after each event
  TString delRecPoints="TPC TRD";
  if (noTPCLocalRec) delRecPoints.ReplaceAll("TPC","");
  rec.SetDeleteRecPoints(delRecPoints.Data()); 
  //

  // Set 0.7% as fraction of friends (Ruben, 2017-08-22)
  rec.SetFractionFriends(0.007);

  AliLog::Flush();
  rec.Run();

}

void AliTRDReconstructandFill() 
{
  //
  // This macro fills 2d histo or vectors during the reconstruction
  // If it is vectors, it fits them directly after the reconstruction
  // and writes the result in the file coeftest.root
  //
 
  TStopwatch timer;
  timer.Start();

  ////Set the parameters of AliTRDCalibra***************
  AliTRDCalibra *calibra = AliTRDCalibra::Instance();

  ////What do you want to use?
  calibra->SetMITracking(); //Offline tracking
  //calibra->Setmcmtracking();
  
  
  ////Do you want to try the correction due to the angles of the tracks for mcm tracklets?
  calibra->SetMcmCorrectAngle();
  
  ////What do you want to fill?
  calibra->SetCH2dOn();//relative gain calibration
  calibra->SetPH2dOn();//drift velocity and time0 calibration
  calibra->SetPRF2dOn();//Pad Response Function calibration


  ////How do you want to store the infos?
  calibra->SetVector2d();//vector method
  calibra->SetHisto2d();//2Dhistograms

  ////Which mode do you want?
  calibra->SetNz(2,2);//For the PRF z direction
  calibra->SetNrphi(2,2);//For The PRF rphi direction
  calibra->SetNz(0,0);//For the gain z direction
  calibra->SetNrphi(0,0);//For the gain rphi direction
  calibra->SetNz(1,3);//For the drift velocity and time0 z direction
  calibra->SetNrphi(1,3);//For the drift velocity and time 0 rphi direction

  ////How many bins?
  calibra->SetNumberBinCharge(100);
  calibra->SetNumberBinPRF(20);
  
  
  ////Do you want to accept more tracks?
  calibra->SetProcent(1.2);//For the gain if one group has a signal above 1.2 the other group then fill
  calibra->SetDifference(10);//For the drift velocity if one group has at least 10 time bins then fill
  calibra->SetNumberClusters(18);//For mcm tracklets only fill only with tracklet with at least 18 clusters
  
  ////Do you want to take only the middle pad for gain or Vdrift?
  //calibra->SetTraMaxPad();
  
  //Do you want to apply more strict cut on the clusters for the PRF calibration?
  calibra->SetThresholdClusterPRF1(2);//The neighbors pads must have a signal smaller than 2 ADC counts
  calibra->SetThresholdClusterPRF2(10);//The 3 pads in the cluster must have a signal above 10 ADC counts
  
  
  ////What do you want to write?
  calibra->SetWrite(0);//For the gain
  calibra->SetWrite(1);//For the average pulse height
  calibra->SetWrite(2);//For the PRF
  
  
  ////If you want to change the name of the file where it is stored (not very good)
  //calibra->SetWriteName("test.root");
  
  
  //Begin the reconstruction
  AliReconstruction rec;
  rec.SetGAliceFile("galice.root"); 
  rec.SetLoadAlignFromCDB(kFALSE);
  rec.SetRunHLTTracking(kFALSE);
  rec.SetFillESD("");
  rec.SetFillTriggerESD(kFALSE);
  rec.SetRunVertexFinder(kFALSE);
  rec.Run();
  timer.Stop();
  timer.Print();
  calibra->Write2d();    


  TStopwatch timerfit;
  timerfit.Start();
  ////Fit directly after having filling****

  ////Do you want to try with less statistics?
  calibra->SetMinEntries(10);//If there is at least 10 entries in the histo, it will fit

  ////Do you want to write the result?
  calibra->SetWriteCoef(0);//gain
  calibra->SetWriteCoef(1);//time 0 and drift velocity
  calibra->SetWriteCoef(2);//PRF

  ////Do you want to change the name of the file (TRD.coefficient.root)?
  calibra->SetWriteNameCoef("coeftest.root");

  ////Do you want to see something?
  calibra->SetDebug(1);

//.........这里部分代码省略.........

//.........这里部分代码省略.........
  AliHLTSystem* gHLT=AliHLTPluginBase::GetInstance();

  //gHLT.SwitchAliLog(0);

  ///////////////////////////////////////////////////////////////////////////////////////////////////
  //
  // define the analysis chain to be run
  //

  bool sectorClusterer=true; // run clusterer on sector or DDL level
  // check if the AliRawReaderMemory supports multiple buffers
  TClass* info=TClass::GetClass("AliRawReaderMemory");
  TList* methods=info->GetListOfAllPublicMethods();
  if (sectorClusterer && !methods->FindObject("AddBuffer")) {
    cerr << "warning: AliRawReaderMemory does not support multiple buffers, falling back to run clusterer on DDL level" << endl;
    sectorClusterer=false;
  }
 
  int iMinSlice=0;
  int iMaxSlice=35;
  int iMinPart=0;
  int iMaxPart=5;

  int DDLNoFromSlicePatch(int, int);

  TString writerInput;
  TString trackerInput;
  TString calibratorInput;

  for (int slice=iMinSlice; slice<=iMaxSlice; slice++) {
    TString arg, clustererInput;
    for (int part=iMinPart; part<=iMaxPart; part++) {
      TString publisher, cf;

      // raw data publisher components
      int ddlno=DDLNoFromSlicePatch(slice, part);
      arg.Form("-minid %d -datatype 'DDL_RAW ' 'TPC '  -dataspec 0x%02x%02x%02x%02x -verbose", ddlno, slice, slice, part, part);
      publisher.Form("DP_%02d_%d", slice, part);
      AliHLTConfiguration pubconf(publisher.Data(), "AliRawReaderPublisher", NULL , arg.Data());

      if (!sectorClusterer) {
      // cluster finder components
      cf.Form("CF_%02d_%d", slice, part);
      AliHLTConfiguration cfconf(cf.Data(), "TPCOfflineClusterer", publisher.Data(), "");

      if (trackerInput.Length()>0) trackerInput+=" ";
      trackerInput+=cf;
      //if (writerInput.Length()>0) writerInput+=" ";
      //writerInput+=cf;
      } else {
	if (clustererInput.Length()>0) clustererInput+=" ";
	clustererInput+=publisher;
      }
    }
    if (sectorClusterer) {
      // cluster finder components
      cf.Form("CF_%02d", slice);
      AliHLTConfiguration cfconf(cf.Data(), "TPCOfflineClusterer", clustererInput.Data(), "");

      if (trackerInput.Length()>0) trackerInput+=" ";
      trackerInput+=cf;
    }
  }

  // one global tracker component
  TString tracker;
  tracker.Form("Global_TR");
  AliHLTConfiguration trackerconf(tracker.Data(), "TPCOfflineTrackerCalib", trackerInput.Data(), "");
  if (writerInput.Length()>0) writerInput+=" ";
  calibratorInput+=tracker;

  // one global calibration component
  TString calibrator;
  calibrator.Form("Global_Calib");
  AliHLTConfiguration calibconf(calibrator.Data(), "TPCOfflineCalibration", calibratorInput.Data(), "");
  if (writerInput.Length()>0) writerInput+=" ";
  writerInput+=calibrator;

  // the writer configuration
  AliHLTConfiguration rootfwconf("sink1", "ROOTFileWriter", writerInput.Data(), "-specfmt=_%d -subdir=out_%d -idfmt=_0x%08x");
  //AliHLTConfiguration esdwconf("sink1", "EsdCollector"   , writerInput.Data(), "-directory hlt-tpc-offline");

  ///////////////////////////////////////////////////////////////////////////////////////////////////
  //
  // Init and run the reconstruction
  // All but HLT reconstructio is switched off
  //
  AliReconstruction rec;
  rec.SetInput(input);
  rec.SetRunVertexFinder(kFALSE);
  rec.SetRunLocalReconstruction("HLT");
  rec.SetRunTracking("");
  rec.SetLoadAlignFromCDB(0);
  rec.SetFillESD("");
  rec.SetRunQA(":");
  rec.SetRunGlobalQA(kFALSE);
  rec.SetFillTriggerESD(kFALSE);
  rec.SetOption("HLT", "libAliHLTUtil.so libAliHLTRCU.so libANALYSIS.so libANALYSISalice.so libTPCcalib.so libAliHLTTPC.so loglevel=0x7c chains=sink1");
  rec.Run();
}

void main_recCPass1_OuterDet(const char *filename="raw.root",Int_t nevents=-1, const char *ocdb="raw://", Bool_t useFullITS=kFALSE)
{
  // Load some system libs for Grid and monitoring
  // Set the CDB storage location
  AliCDBManager * man = AliCDBManager::Instance();
  man->SetDefaultStorage(ocdb);
  // Reconstruction settings
  AliReconstruction rec;
  // Upload CDB entries from the snapshot (local root file) if snapshot exist
  if (gSystem->AccessPathName("OCDB.root", kFileExists)==0) {        
    man->SetDefaultStorage("local://");
    man->SetRaw(kFALSE);
    man->SetSnapshotMode("OCDB.root");
  }
  if (gSystem->AccessPathName("localOCDBaccessConfig.C", kFileExists)==0) {        
    gInterpreter->ProcessLine("localOCDBaccessConfig();");
  }

  if(!useFullITS){
    // only SPD-trackletting will be done
    printf("Special ITS configuration: only SPD-trackletting will be done\n");
    rec.SetRecoParam("ITS",GetSpecialITSRecoParam());
  }

  // All friends
  rec.SetFractionFriends(1.0);

 // AliReconstruction settings - hardwired MB trigger for calibration

  TString newfilename = filename;
  newfilename += "?Trigger=kCalibOuter";
  rec.SetInput(newfilename.Data());

  // Set protection against too many events in a chunk (should not happen)
  if (nevents>0) rec.SetEventRange(0,nevents);

  // Remove recpoints after each event
  rec.SetDeleteRecPoints("ITS MUON EMCAL PHOS VZERO T0");

  // Switch off the V0 finder - saves time!
  rec.SetRunV0Finder(kFALSE); 

  //
  // QA options - all QA is off
  //
  rec.SetRunQA(":");
  rec.SetRunGlobalQA(kFALSE);

  // AliReconstruction settings
  rec.SetWriteESDfriend(kFALSE);
  if(!useFullITS) rec.SetWriteAlignmentData(kFALSE);
  else rec.SetWriteAlignmentData();
  rec.SetUseTrackingErrorsForAlignment("ITS");
  rec.SetRunReconstruction("ITS MUON EMCAL PHOS VZERO T0");
  rec.SetFillESD("ITS MUON EMCAL PHOS VZERO T0");
  rec.SetCleanESD(kFALSE);

  // Specific reco params for ZDC (why isn't this automatic?)
//  rec.SetRecoParam("ZDC",AliZDCRecoParamPbPb::GetHighFluxParam(2760));

  //Ignore SetStopOnError
  rec.SetStopOnError(kFALSE);

  AliLog::Flush();
  rec.Run();
}

void recraw() {

	// AliReconstruction settings
  AliReconstruction reco;

  reco.SetWriteESDfriend(kTRUE);
  reco.SetWriteAlignmentData();
  reco.SetInput("raw.root");

  reco.SetDefaultStorage("local://$ALICE_ROOT/OCDB");
  reco.SetSpecificStorage("GRP/GRP/Data",
			  Form("local://%s/..",gSystem->pwd()));


  reco.SetUseTrackingErrorsForAlignment("ITS");
	
  // all events in one single file
  reco.SetNumberOfEventsPerFile(-1);

  // switch off cleanESD
  reco.SetCleanESD(kFALSE);
	
  reco.SetRunQA("ALL:ALL") ;

  reco.SetQARefDefaultStorage("local://$ALICE_ROOT/OCDB") ;
  for (Int_t det = 0 ; det < AliQA::kNDET ; det++) {
    reco.SetQACycles(det, 9999) ;
    reco.SetQAWriteExpert(det) ; 
  }
  
  AliLog::Flush();
	
  TStopwatch timer;
  timer.Start();
  reco.Run();
  timer.Stop();
  timer.Print();
}

void recTPC(Int_t type, const char *filename="data.root")
{
  /// Set path to calibration data
  ///
  /// type variable = 0 - cosmic test
  ///               = 1 - laser test

  AliCDBManager * man = AliCDBManager::Instance();
  man->SetDefaultStorage("local://$ALICE_ROOT/OCDB");
  //man->SetRun(0);
  //man->SetSpecificStorage("TPC/*/*","local:///afs/cern.ch/user/m/mivanov/public/Calib");
  //
  // Set reconstruction parameters
  //
  AliLog::SetClassDebugLevel("AliTPCclusterer",2);
  AliTPCRecoParam * tpcRecoParam = 0;
  if (type==0)  tpcRecoParam = AliTPCRecoParam::GetCosmicTestParam(kTRUE);
  if (type>0)  tpcRecoParam = AliTPCRecoParam::GetLaserTestParam(kTRUE);
  tpcRecoParam->Dump();
  AliTPCReconstructor::SetRecoParam(tpcRecoParam);
  AliTPCReconstructor::SetStreamLevel(1);
  //
  //
  //
  AliReconstruction rec;  
  rec.SetDefaultStorage("local://$ALICE_ROOT/OCDB");
  rec.SetSpecificStorage("TPC/*/*","local:///afs/cern.ch/user/m/mivanov/public/Calib");
  rec.SetLoadAlignData("");
  rec.SetWriteESDfriend(kTRUE);
  rec.SetInput(filename);
  rec.SetEquipmentIdMap("EquipmentIdMap.data");
  rec.SetRunReconstruction("TPC");
  rec.SetOption("TPC","PedestalSubtraction");
  //  rec.SetRunLocalReconstruction("");
  //  rec.SetRunTracking("TPC");
  rec.SetFillESD("TPC");
  rec.SetFillTriggerESD(kFALSE);
  rec.SetRunVertexFinder(kFALSE);
  rec.SetWriteAlignmentData(kTRUE);
  rec.Run();
}