Python entk.Pipeline類代碼示例

def test_wfp_check_processor():

    p = Pipeline()
    s = Stage()
    t = Task()
    t.executable = ['/bin/date']
    s.add_tasks(t)
    p.add_stages(s)

    amgr = Amgr(hostname=hostname, port=port)
    amgr._setup_mqs()

    wfp = WFprocessor(sid=amgr._sid,
                      workflow=[p],
                      pending_queue=amgr._pending_queue,
                      completed_queue=amgr._completed_queue,
                      mq_hostname=amgr._mq_hostname,
                      port=amgr._port,
                      resubmit_failed=False)

    wfp.start_processor()
    assert wfp.check_processor()

    wfp.terminate_processor()
    assert not wfp.check_processor()

def generate_pipeline(name, stages):

    # Create a Pipeline object
    p = Pipeline()
    p.name = name


    for s_cnt in range(stages):

        # Create a Stage object
        s = Stage()
        s.name = 'Stage %s'%s_cnt

        for t_cnt in range(5):

            # Create a Task object
            t = Task()
            t.name = 'my-task'        # Assign a name to the task (optional)
            t.executable = '/bin/echo'   # Assign executable to the task
            # Assign arguments for the task executable
            t.arguments = ['I am task %s in %s in %s'%(t_cnt, s_cnt, name)]

            # Add the Task to the Stage
            s.add_tasks(t)

        # Add Stage to the Pipeline
        p.add_stages(s)

    return p

def test_wfp_initialization(s, i, b, l):

    p = Pipeline()
    st = Stage()
    t = Task()
    t.executable = ['/bin/date']
    st.add_tasks(t)
    p.add_stages(st)

    wfp = WFprocessor(sid='rp.session.local.0000',
                      workflow=set([p]),
                      pending_queue=['pending'],
                      completed_queue=['completed'],
                      mq_hostname=hostname,
                      port=port,
                      resubmit_failed=True)

    assert len(wfp._uid.split('.')) == 2
    assert 'wfprocessor' == wfp._uid.split('.')[0]
    assert wfp._pending_queue == ['pending']
    assert wfp._completed_queue == ['completed']
    assert wfp._mq_hostname == hostname
    assert wfp._port == port
    assert wfp._wfp_process == None
    assert wfp._workflow == set([p])

    if not isinstance(s, unicode):
        wfp = WFprocessor(sid=s,
                          workflow=set([p]),
                          pending_queue=l,
                          completed_queue=l,
                          mq_hostname=s,
                          port=i,
                          resubmit_failed=b)

def test_state_order():

    """
    **Purpose**: Test if the Pipeline, Stage and Task are assigned their states in the correct order
    """

    def create_single_task():

        t1 = Task()
        t1.name = 'simulation'
        t1.executable = ['/bin/date']
        t1.copy_input_data = []
        t1.copy_output_data = []

        return t1

    p1 = Pipeline()
    p1.name = 'p1'

    s = Stage()
    s.name = 's1'
    s.tasks = create_single_task()
    s.add_tasks(create_single_task())

    p1.add_stages(s)

    res_dict = {

            'resource': 'local.localhost',
            'walltime': 5,
            'cpus': 1,
            'project': ''

    }

    os.environ['RADICAL_PILOT_DBURL'] = MLAB
    os.environ['RP_ENABLE_OLD_DEFINES'] = 'True'
    
    appman = Amgr(hostname=hostname, port=port)
    appman.resource_desc = res_dict

    appman.workflow = [p1]
    appman.run()

    p_state_hist = p1.state_history
    assert p_state_hist == ['DESCRIBED', 'SCHEDULING', 'DONE']

    s_state_hist = p1.stages[0].state_history
    assert s_state_hist == ['DESCRIBED', 'SCHEDULING', 'SCHEDULED', 'DONE']

    tasks = p1.stages[0].tasks

    for t in tasks:

        t_state_hist = t.state_history
        assert t_state_hist == ['DESCRIBED', 'SCHEDULING', 'SCHEDULED', 'SUBMITTING', 'SUBMITTED',
                            'EXECUTED', 'DEQUEUEING', 'DEQUEUED', 'DONE']

def test_pipeline_to_dict():

    p = Pipeline()
    d = p.to_dict()
    assert d == {'uid': None,
                 'name': None,
                 'state': states.INITIAL,
                 'state_history': [states.INITIAL],
                 'completed': False}

def test_pipeline_decrement_stage():

    p = Pipeline()
    s1 = Stage()
    t = Task()
    t.executable = ['/bin/date']
    s1.tasks = t
    s2 = Stage()
    t = Task()
    t.executable = ['/bin/date']
    s2.tasks = t
    p.add_stages([s1, s2])

    p._increment_stage()
    p._increment_stage()
    assert p._stage_count == 2
    assert p._cur_stage == 2
    assert p._completed_flag.is_set() == True

    p._decrement_stage()
    assert p._stage_count == 2
    assert p._cur_stage == 1
    assert p._completed_flag.is_set() == False

    p._decrement_stage()
    assert p._stage_count == 2
    assert p._cur_stage == 0
    assert p._completed_flag.is_set() == False

def test_wfp_workflow_incomplete():

    p = Pipeline()
    s = Stage()
    t = Task()
    t.executable = ['/bin/date']
    s.add_tasks(t)
    p.add_stages(s)

    amgr = Amgr(hostname=hostname, port=port)
    amgr._setup_mqs()

    wfp = WFprocessor(sid=amgr._sid,
                      workflow=[p],
                      pending_queue=amgr._pending_queue,
                      completed_queue=amgr._completed_queue,
                      mq_hostname=amgr._mq_hostname,
                      port=amgr._port,
                      resubmit_failed=False)

    wfp._initialize_workflow()

    assert wfp.workflow_incomplete()

    amgr.workflow = [p]
    profiler = ru.Profiler(name='radical.entk.temp')

    p.stages[0].state == states.SCHEDULING
    p.state == states.SCHEDULED
    for t in p.stages[0].tasks:
        t.state = states.COMPLETED

    import json
    import pika

    task_as_dict = json.dumps(t.to_dict())
    mq_connection = pika.BlockingConnection(pika.ConnectionParameters(host=amgr._mq_hostname, port=amgr._port))
    mq_channel = mq_connection.channel()
    mq_channel.basic_publish(exchange='',
                             routing_key='%s-completedq-1' % amgr._sid,
                             body=task_as_dict)

    amgr._terminate_sync = Event()
    sync_thread = Thread(target=amgr._synchronizer, name='synchronizer-thread')
    sync_thread.start()

    proc = Process(target=func_for_dequeue_test, name='temp-proc', args=(wfp,))
    proc.start()
    proc.join()

    amgr._terminate_sync.set()
    sync_thread.join()

    assert not wfp.workflow_incomplete()

def test_pipeline_stage_assignment():

    p = Pipeline()
    s = Stage()
    t = Task()
    t.executable = ['/bin/date']
    s.tasks = t
    p.stages = s

    assert type(p.stages) == list
    assert p._stage_count == 1
    assert p._cur_stage == 1
    assert p.stages[0] == s

def generate_pipeline():

    def func_condition():

        global CUR_NEW_STAGE, MAX_NEW_STAGE

        if CUR_NEW_STAGE <= MAX_NEW_STAGE:
            return True

        return False

    def func_on_true():

        global CUR_NEW_STAGE
        CUR_NEW_STAGE += 1

        shuffle(p.stages[CUR_NEW_STAGE:])

    def func_on_false():
        print 'Done'

    # Create a Pipeline object
    p = Pipeline()

    for s in range(MAX_NEW_STAGE+1):

        # Create a Stage object
        s1 = Stage()

        for i in range(CUR_TASKS):

            t1 = Task()
            t1.executable = '/bin/sleep'
            t1.arguments = [ '30']

            # Add the Task to the Stage
            s1.add_tasks(t1)

        # Add post-exec to the Stage
        s1.post_exec = {
                        condition': func_condition,
                        on_true': func_on_true,
                        on_false': func_on_false
                        }

        # Add Stage to the Pipeline
        p.add_stages(s1)

    return p

def test_pipeline_assign_uid():

    p = Pipeline()
    try:
        import glob
        import shutil
        import os
        home = os.environ.get('HOME','/home')
        test_fold = glob.glob('%s/.radical/utils/test*'%home)
        for f in test_fold:
            shutil.rmtree(f)
    except:
        pass
    p._assign_uid('test')
    assert p.uid == 'pipeline.0000'

    def create_pipeline():

        p = Pipeline()

        s = Stage()

        t1 = Task()
        t1.name = 'simulation'
        t1.executable = ['sleep']
        t1.arguments = ['10']

        s.add_tasks(t1)

        p.add_stages(s)

        return p

def test_pipeline_state_assignment(t, l, i, b):

    p = Pipeline()

    data_type = [l, i, b]

    for data in data_type:
        with pytest.raises(TypeError):
            p.state = data

    if isinstance(t,str):
        with pytest.raises(ValueError):
            p.state = t

    for val in states._pipeline_state_values.keys():
        p.state = val

def test_pipeline_from_dict():

    d = {'uid': 're.Pipeline.0000',
         'name': 'p1',
         'state': states.DONE,
         'state_history': [states.INITIAL, states.DONE],
         'completed': True}

    p = Pipeline()
    p.from_dict(d)

    assert p.uid == d['uid']
    assert p.name == d['name']
    assert p.state == d['state']
    assert p.state_history == d['state_history']
    assert p.completed == d['completed']

def test_pipeline_validate_entities(t, l, i, b, se):

    p = Pipeline()

    data_type = [t, l, i, b, se]

    for data in data_type:
        with pytest.raises(TypeError):
            p._validate_entities(data)

    s = Stage()
    assert isinstance(p._validate_entities(s), list)

    s1 = Stage()
    s2 = Stage()
    assert [s1,s2] == p._validate_entities([s1,s2])

def test_wfp_enqueue():

    p = Pipeline()
    s = Stage()
    t = Task()
    t.executable = ['/bin/date']
    s.add_tasks(t)
    p.add_stages(s)

    amgr = Amgr(hostname=hostname, port=port)
    amgr._setup_mqs()

    wfp = WFprocessor(sid=amgr._sid,
                      workflow=[p],
                      pending_queue=amgr._pending_queue,
                      completed_queue=amgr._completed_queue,
                      mq_hostname=amgr._mq_hostname,
                      port=amgr._port,
                      resubmit_failed=False)

    wfp._initialize_workflow()

    amgr.workflow = [p]
    profiler = ru.Profiler(name='radical.entk.temp')

    for t in p.stages[0].tasks:
        assert t.state == states.INITIAL

    assert p.stages[0].state == states.INITIAL
    assert p.state == states.INITIAL

    amgr._terminate_sync = Event()
    sync_thread = Thread(target=amgr._synchronizer, name='synchronizer-thread')
    sync_thread.start()

    proc = Process(target=func_for_enqueue_test, name='temp-proc', args=(wfp,))
    proc.start()
    proc.join()

    amgr._terminate_sync.set()
    sync_thread.join()

    for t in p.stages[0].tasks:
        assert t.state == states.SCHEDULED

    assert p.stages[0].state == states.SCHEDULED
    assert p.state == states.SCHEDULING