本文整理匯總了Python中qiita_ware.ebi.EBISubmission.write_experiment_xml方法的典型用法代碼示例。如果您正苦於以下問題：Python EBISubmission.write_experiment_xml方法的具體用法？Python EBISubmission.write_experiment_xml怎麽用？Python EBISubmission.write_experiment_xml使用的例子？那麽, 這裏精選的方法代碼示例或許可以為您提供幫助。您也可以進一步了解該方法所在類qiita_ware.ebi.EBISubmission的用法示例。
在下文中一共展示了EBISubmission.write_experiment_xml方法的2個代碼示例，這些例子默認根據受歡迎程度排序。您可以為喜歡或者感覺有用的代碼點讚，您的評價將有助於係統推薦出更棒的Python代碼示例。
示例1: test_write_experiment_xml
# 需要導入模塊: from qiita_ware.ebi import EBISubmission [as 別名]
# 或者: from qiita_ware.ebi.EBISubmission import write_experiment_xml [as 別名]
def test_write_experiment_xml(self):
submission = EBISubmission('001', 'teststudy', 'test asbstract',
'metagenome')
submission.add_sample('test1')
submission.add_sample_prep('test1', 'ILLUMINA', 'fastq',
'fakepath', 'experiment description',
'library protocol')
fh, output = mkstemp()
close(fh)
submission.write_experiment_xml(output)
obs_stripped = ''.join([l.strip() for l in open(output)])
exp_stripped = ''.join([l.strip() for l in EXPERIMENTXML.splitlines()])
self.assertEqual(obs_stripped, exp_stripped)
remove(output)示例2: test_write_experiment_xml
# 需要導入模塊: from qiita_ware.ebi import EBISubmission [as 別名]
# 或者: from qiita_ware.ebi.EBISubmission import write_experiment_xml [as 別名]
def test_write_experiment_xml(self):
submission = EBISubmission('001', 'teststudy', 'test asbstract',
investigation_type='Other',
new_investigation_type='metagenome')
submission.add_sample('test1', '9606', 'homo sapiens', 'desc1')
submission.add_sample_prep('test1', 'ILLUMINA', 'fastq',
self.sample1_fp, 'experiment description',
'library protocol')
fh, output = mkstemp()
close(fh)
submission.write_experiment_xml(output)
obs_stripped = ''.join([l.strip() for l in open(output)])
exp = EXPERIMENTXML % {
'path': self.sample1_fp,
'organization_prefix': qiita_config.ebi_organization_prefix}
exp_stripped = ''.join([l.strip() for l in exp.splitlines()])
self.assertEqual(obs_stripped, exp_stripped)
remove(output)