本文整理匯總了Python中qiita_ware.ebi.EBISubmission.add_samples_from_templates方法的典型用法代碼示例。如果您正苦於以下問題：Python EBISubmission.add_samples_from_templates方法的具體用法？Python EBISubmission.add_samples_from_templates怎麽用？Python EBISubmission.add_samples_from_templates使用的例子？那麽, 這裏精選的方法代碼示例或許可以為您提供幫助。您也可以進一步了解該方法所在類qiita_ware.ebi.EBISubmission的用法示例。
在下文中一共展示了EBISubmission.add_samples_from_templates方法的3個代碼示例，這些例子默認根據受歡迎程度排序。您可以為喜歡或者感覺有用的代碼點讚，您的評價將有助於係統推薦出更棒的Python代碼示例。
示例1: test_add_samples_from_templates_bad_directory
# 需要導入模塊: from qiita_ware.ebi import EBISubmission [as 別名]
# 或者: from qiita_ware.ebi.EBISubmission import add_samples_from_templates [as 別名]
def test_add_samples_from_templates_bad_directory(self):
sample_template = StringIO(EXP_SAMPLE_TEMPLATE)
prep_template = StringIO(EXP_PREP_TEMPLATE)
submission = EBISubmission('001', 'teststudy', 'test asbstract',
'metagenome')
with self.assertRaises(IOError):
submission.add_samples_from_templates(
sample_template, [prep_template],
self.path+'WILL-NOT-EXIST-BOOM')示例2: test_add_samples_from_templates
# 需要導入模塊: from qiita_ware.ebi import EBISubmission [as 別名]
# 或者: from qiita_ware.ebi.EBISubmission import add_samples_from_templates [as 別名]
def test_add_samples_from_templates(self):
sample_template = StringIO(EXP_SAMPLE_TEMPLATE)
prep_template = StringIO(EXP_PREP_TEMPLATE)
submission = EBISubmission('001', 'teststudy', 'test asbstract',
'metagenome')
submission.add_samples_from_templates(sample_template, prep_template,
self.path)
self.assertTrue('sample1' in submission.samples)
self.assertTrue('sample2' in submission.samples)
self.assertTrue('sample3' in submission.samples)
self.assertEqual(submission.samples['sample2']['preps'][0]['platform'],
'ILLUMINA')
self.assertEqual(
submission.samples['sample2']['preps'][0]['file_path'],
self.path + '/sample2.fastq.gz')
with self.assertRaises(KeyError):
submission.samples['nothere']示例3: test_add_samples_from_templates_filter_samples
# 需要導入模塊: from qiita_ware.ebi import EBISubmission [as 別名]
# 或者: from qiita_ware.ebi.EBISubmission import add_samples_from_templates [as 別名]
def test_add_samples_from_templates_filter_samples(self):
sample_template = StringIO(EXP_SAMPLE_TEMPLATE)
prep_template = StringIO(EXP_PREP_TEMPLATE_FILTERED)
submission = EBISubmission('001', 'teststudy', 'test asbstract',
investigation_type='Other',
new_investigation_type='metagenome')
submission.add_samples_from_templates(sample_template, prep_template,
self.path)
self.assertTrue('sample1' in submission.samples)
self.assertTrue('sample2' in submission.samples)
self.assertFalse('sample3' in submission.samples)
self.assertEqual(submission.samples['sample2']['prep']['platform'],
'ILLUMINA')
self.assertEqual(
submission.samples['sample2']['prep']['file_path'],
self.sample2_fp)
with self.assertRaises(KeyError):
submission.samples['nothere']