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Python RoiManager.getName方法代碼示例

本文整理匯總了Python中ij.plugin.frame.RoiManager.getName方法的典型用法代碼示例。如果您正苦於以下問題:Python RoiManager.getName方法的具體用法?Python RoiManager.getName怎麽用?Python RoiManager.getName使用的例子?那麽, 這裏精選的方法代碼示例或許可以為您提供幫助。您也可以進一步了解該方法所在ij.plugin.frame.RoiManager的用法示例。


在下文中一共展示了RoiManager.getName方法的1個代碼示例,這些例子默認根據受歡迎程度排序。您可以為喜歡或者感覺有用的代碼點讚,您的評價將有助於係統推薦出更棒的Python代碼示例。

示例1: __displayCells

# 需要導入模塊: from ij.plugin.frame import RoiManager [as 別名]
# 或者: from ij.plugin.frame.RoiManager import getName [as 別名]
	def __displayCells(self, nameimage, methodeleon=False):
		"""
		Displays all the ROIs of the cells with different colors
		
		"""
		# we define a list of colors that will be used.

		colors = []
		ncells= len(self.__dict[nameimage])
		if ncells > 0 :
			step=200/ncells
			if step<1 : step=1
			for i in range(ncells) : 
				r = random.randrange(5,205,step)
				g = random.randrange(10,210,step)
				b = random.randrange(30,230,step)
				#r = int(0+i*step)
				#g = random.randrange(10, 190, 30)
				#b = int(250-i*step)
				
				colors.append(Color(r, g, b))

		else : 	colors=[Color.blue, Color.green, Color.magenta, Color.orange, Color.yellow]
		tempcolors=list(colors)
		# we try to have random and different colors for each cell.
		for cellname in self.__dict[nameimage].keys() :
			if len(tempcolors)>0 : 
				self.__dict[nameimage][cellname].setColor(tempcolors.pop(0))
			else :
				tempcolors=list(colors)
				self.__dict[nameimage][cellname].setColor(tempcolors.pop(0))
		

		self.__SaveCells(nameimage)
		
		rm = RoiManager.getInstance()
		if (rm==None): rm = RoiManager()
		rm.runCommand("reset")

		# if the user wants to save files, .zip for the ROIs are saved.
		#if self.__optionSave == True : 
		#os.mkdir(self.__pathdir+"ROIs/", mode=0777)
		os.makedirs(self.__pathdir+"ROIs/", mode=0777)
		tempimp = IJ.createImage("tempimp", "8-bit Black", self.__dictImages[nameimage].getWidth(), self.__dictImages[nameimage].getHeight(), 1)
		tempimp.show()
		for cellname in self.__dict[nameimage].keys() :
			for numslice in range(self.__dictImages[nameimage].getImageStackSize()) :
				r = self.__dict[nameimage][cellname].getRoi(numslice)
				try : 
					name=r.getName()
				
				except AttributeError : continue

				else :
					s = "%04i" % (numslice+1)
					#name=s+"-"+name.split("-", 1)[1]
					name=s+"-cell"+name.split("cell")[1]
					r.setName(name)
					try :
						rm.addRoi(r)
						rname=rm.getName(rm.getCount()-1)
						#rm.select(self.__dictImages[nameimage], rm.getCount()-1)
						rm.select(tempimp, rm.getCount()-1)
						rm.runCommand("Rename", name)
					except TypeError : continue
					
					
				#if isinstance(self.__dict[nameimage][cellname].getRoi(numslice),Roi) == True :
				#	s = "%04i" % (numslice)
				#	#rm.add(self.__dictImages[nameimage], self.__dict[nameimage][cellname].getRoi(numslice)  ,  numslice)
				#	name=self.__dict[nameimage][cellname].getRoi(numslice).getName()
				#	name=s+name
				#	self.__dict[nameimage][cellname].getRoi(numslice).setName(name)
				#	rm.addRoi(self.__dict[nameimage][cellname].getRoi(numslice))
			rm.runCommand("Save", self.__pathdir+"ROIs/"+cellname+".zip")
			rm.runCommand("reset")
		
		tempimp.close()
開發者ID:leec13,項目名稱:MorphoBactDev,代碼行數:80,代碼來源:BacteriaTracking.py


注:本文中的ij.plugin.frame.RoiManager.getName方法示例由純淨天空整理自Github/MSDocs等開源代碼及文檔管理平台,相關代碼片段篩選自各路編程大神貢獻的開源項目,源碼版權歸原作者所有,傳播和使用請參考對應項目的License;未經允許,請勿轉載。