Python subprocess.Popen方法代码示例

# 需要导入模块: import subprocess [as 别名]
# 或者: from subprocess import Popen [as 别名]
def get_num_triggering_samples(signature, samples):
    """
        Get number of samples triggering ClamAV signature _signature_.
        :param signature: A dictionary with keys 'type' for the signature type
            and 'signature' for the signature string.
        :param samples: A list of sample paths to scan.
        :returns: The number of samples triggering this signature.
    """
    handle, temp_sig = tempfile.mkstemp(suffix = "." + signature["type"])
    try:
        with os.fdopen(handle, "w") as f:
            f.write(signature["signature"])
        proc_clamscan = subprocess.Popen(["clamscan", 
                                          "-d", temp_sig,
                                          "--no-summary", "--infected"] + samples, 
                                         stdout = subprocess.PIPE,
                                         stderr = subprocess.PIPE)
        stdout, stderr = proc_clamscan.communicate()
        if not stdout:
            return 0
        else:
            return len(stdout.strip().split("\n"))
    finally:
        os.unlink(temp_sig) 

# 需要导入模块: import subprocess [as 别名]
# 或者: from subprocess import Popen [as 别名]
def alignProcWrapper(ref, seq):
    cmd = "python {} {} {}".format(
        os.path.realpath(__file__),
        ref,
        seq)
    
    proc = subprocess.Popen(cmd, shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE)
    out, err = proc.communicate()

    if proc.returncode != 0:
        return None

    fields = out.split()
    strand = fields[0].decode()
    
    aln = Aln(int(fields[1]), int(fields[2]), fields[3].decode(), int(fields[4]), int(fields[5]))

    return strand, aln 

# 需要导入模块: import subprocess [as 别名]
# 或者: from subprocess import Popen [as 别名]
def main():
    env = os.environ.copy()

    # in case the PYTHONHASHSEED was not set, set to 0 to denote
    # that hash randomization should be disabled and
    # restart python for the changes to take effect
    if 'PYTHONHASHSEED' not in env:
        env['PYTHONHASHSEED'] = "0"
        proc = subprocess.Popen([sys.executable] + sys.argv,
                                env=env)
        proc.communicate()
        exit(proc.returncode)

    # check if hash has been properly de-randomized in python 3
    # by comparing hash of magic tuple
    h = hash(eden.__magic__)
    assert h == eden.__magic_py2hash__ or h == eden.__magic_py3hash__, 'Unexpected hash value: "{}". Please check if python 3 hash normalization is disabled by setting shell variable PYTHONHASHSEED=0.'.format(h)

    # run program and exit
    print("This is the magic python hash restart script.")
    exit(0) 

# 需要导入模块: import subprocess [as 别名]
# 或者: from subprocess import Popen [as 别名]
def update_version_py():
    if not os.path.isdir(".git"):
        print("This does not appear to be a Git repository.")
        return
    try:
        # p = subprocess.Popen(["git", "describe","--tags", "--always"],
        #        stdout=subprocess.PIPE)
        p = subprocess.Popen("git rev-list HEAD --count".split(),
                             stdout=subprocess.PIPE)

    except EnvironmentError:
        print("unable to run git, leaving eden/_version.py alone")
        return
    stdout = p.communicate()[0]
    if p.returncode != 0:
        print("unable to run git, leaving eden/_version.py alone")
        return
    ver = "0.3."+stdout.strip()
    # ver = str(int(ver,16)) # pypi doesnt like base 16
    f = open("eden/_version.py", "w")
    f.write(VERSION_PY % ver)
    f.close()
    print("set eden/_version.py to '%s'" % ver) 

# 需要导入模块: import subprocess [as 别名]
# 或者: from subprocess import Popen [as 别名]
def call(self, cmd, **kwargs):
        print('Running "{}"'.format(cmd), file=sys.stderr)
        expect = kwargs.pop("expect", [dict(return_codes=[os.EX_OK], stdout=None, stderr=None)])
        process = subprocess.Popen(cmd, stdin=kwargs.get("stdin", subprocess.PIPE), stdout=subprocess.PIPE,
                                   stderr=subprocess.PIPE, **kwargs)
        out, err = process.communicate()
        return_code = process.poll()
        out = out.decode(sys.stdin.encoding)
        err = err.decode(sys.stdin.encoding)

        def match(return_code, out, err, expected):
            exit_ok = return_code in expected["return_codes"]
            stdout_ok = re.search(expected.get("stdout") or "", out)
            stderr_ok = re.search(expected.get("stderr") or "", err)
            return exit_ok and stdout_ok and stderr_ok
        if not any(match(return_code, out, err, exp) for exp in expect):
            print(err)
            e = subprocess.CalledProcessError(return_code, cmd, output=out)
            e.stdout, e.stderr = out, err
            raise e
        return self.SubprocessResult(out, err, return_code) 

# 需要导入模块: import subprocess [as 别名]
# 或者: from subprocess import Popen [as 别名]
def get_perf(filename):
    ''' run conlleval.pl perl script to obtain
    precision/recall and F1 score '''
    _conlleval = PREFIX + 'conlleval'
    if not isfile(_conlleval):
        #download('http://www-etud.iro.umontreal.ca/~mesnilgr/atis/conlleval.pl') 
        os.system('wget https://www.comp.nus.edu.sg/%7Ekanmy/courses/practicalNLP_2008/packages/conlleval.pl')
        chmod('conlleval.pl', stat.S_IRWXU) # give the execute permissions
    
    out = []
    proc = subprocess.Popen(["perl", _conlleval], stdin=subprocess.PIPE, stdout=subprocess.PIPE)
    stdout, _ = proc.communicate(open(filename).read())
    for line in stdout.split('\n'):
        if 'accuracy' in line:
            out = line.split()
            break
    
    # out = ['accuracy:', '16.26%;', 'precision:', '0.00%;', 'recall:', '0.00%;', 'FB1:', '0.00']
    precision = float(out[3][:-2])
    recall    = float(out[5][:-2])
    f1score   = float(out[7])

    return {'p':precision, 'r':recall, 'f1':f1score} 

# 需要导入模块: import subprocess [as 别名]
# 或者: from subprocess import Popen [as 别名]
def pipe_fopen(command, mode, background=True):
    if mode not in ["rb", "r"]:
        raise RuntimeError("Now only support input from pipe")

    p = subprocess.Popen(command, shell=True, stdout=subprocess.PIPE)

    def background_command_waiter(command, p):
        p.wait()
        if p.returncode != 0:
            warnings.warn("Command \"{0}\" exited with status {1}".format(
                command, p.returncode))
            _thread.interrupt_main()

    if background:
        thread = threading.Thread(target=background_command_waiter,
                                  args=(command, p))
        # exits abnormally if main thread is terminated .
        thread.daemon = True
        thread.start()
    else:
        background_command_waiter(command, p)
    return p.stdout 

# 需要导入模块: import subprocess [as 别名]
# 或者: from subprocess import Popen [as 别名]
def get_git_hash():

    def _minimal_ext_cmd(cmd):
        # construct minimal environment
        env = {}
        for k in ['SYSTEMROOT', 'PATH', 'HOME']:
            v = os.environ.get(k)
            if v is not None:
                env[k] = v
        # LANGUAGE is used on win32
        env['LANGUAGE'] = 'C'
        env['LANG'] = 'C'
        env['LC_ALL'] = 'C'
        out = subprocess.Popen(
            cmd, stdout=subprocess.PIPE, env=env).communicate()[0]
        return out

    try:
        out = _minimal_ext_cmd(['git', 'rev-parse', 'HEAD'])
        sha = out.strip().decode('ascii')
    except OSError:
        sha = 'unknown'

    return sha 

# 需要导入模块: import subprocess [as 别名]
# 或者: from subprocess import Popen [as 别名]
def disas_objdump(b):
    with open("/dev/shm/shifter", "w") as f:
        f.write(b)
    if arch == "64":
        dis, errors = subprocess.Popen("objdump -D --insn-width=256 -b binary \
                -mi386 -Mx86-64 /dev/shm/shifter | head -8 | tail -1",
                stdout=subprocess.PIPE, stderr=subprocess.PIPE, shell=True).communicate()
    else:
        dis, errors = subprocess.Popen("objdump -D --insn-width=256 -b binary \
                -mi386 /dev/shm/shifter | head -8 | tail -1",
                stdout=subprocess.PIPE, stderr=subprocess.PIPE, shell=True).communicate()
    dis = dis[6:] # address
    raw = dis[:256*3].replace(" ","")
    dis = dis[256*3:].strip().split(None, 2)
    mnemonic = dis[0]
    if len(dis) > 1:
        op_str = dis[1]
    else:
        op_str = ""
    if mnemonic == "(bad)":
        mnemonic = "(unk)"
        insn = ""
        op_str = ""
    size = len(raw)/2
    return (mnemonic, op_str, size) 

# 需要导入模块: import subprocess [as 别名]
# 或者: from subprocess import Popen [as 别名]
def start(self):
        self.command = "%s %s -%c -R %s -s %d" % \
                (
                    INJECTOR,
                    " ".join(self.settings.args),
                    self.settings.synth_mode,
                    "-0" if self.settings.root else "",
                    self.settings.seed
                )
        self.process = subprocess.Popen(
            "exec %s" % self.command,
            shell=True,
            stdout=subprocess.PIPE,
            stdin=subprocess.PIPE,
            preexec_fn=os.setsid
            ) 

# 需要导入模块: import subprocess [as 别名]
# 或者: from subprocess import Popen [as 别名]
def dd_iso_image(self, input_, output, gui_update, status_update):
        ''' Implementation for OS that use dd to write the iso image. 
        '''
        in_file_size = os.path.getsize(input_)
        cmd = [self.dd_exe, 'if=' + input_,
               'of=' + self.physical_disk(output), 'bs=1M']
        self.dd_iso_image_add_args(cmd, input_, output)
        kw_args = {
            'stdout' : subprocess.PIPE,
            'stderr' : subprocess.PIPE,
            'shell'  : False,
            }
        self.add_dd_iso_image_popen_args(kw_args)
        self.dd_iso_image_prepare(input, output, status_update)
        log('Executing => ' + str(cmd))
        dd_process = subprocess.Popen(cmd, **kw_args)
        output_q = queue.Queue()
        while dd_process.poll() is None:
            self.dd_iso_image_readoutput(dd_process, gui_update, in_file_size,
                                         output_q)
        output_lines = [output_q.get() for i in range(output_q.qsize())]
        for l in output_lines:
            log('dd: ' + l)
        return self.dd_iso_image_interpret_result(
            dd_process.returncode, output_lines) 

# 需要导入模块: import subprocess [as 别名]
# 或者: from subprocess import Popen [as 别名]
def dd_iso_image_readoutput(self, dd_process, gui_update, in_file_size,
                                output_q):
        # If this time delay is not given, the Popen does not execute
        # the actual command
        time.sleep(0.1)
        dd_process.send_signal(signal.SIGUSR1)
        dd_process.stderr.flush()
        while True:
            time.sleep(0.1)
            out_error = dd_process.stderr.readline().decode()
            if out_error:
                if 'bytes' in out_error:
                    bytes_copied = float(out_error.split(' ', 1)[0])
                    gui_update( bytes_copied / in_file_size * 100. )
                    break
                if 15 < output_q.qsize():
                    output_q.get()
                output_q.put(out_error.rstrip())
            else:
                # stderr is closed
                break 

# 需要导入模块: import subprocess [as 别名]
# 或者: from subprocess import Popen [as 别名]
def gpt_device(self, dev_name):
        disk_dev = self.physical_disk(dev_name)
        cmd = ['parted', disk_dev, '-s', 'print']
        with open(os.devnull) as devnull:
            p = subprocess.Popen(cmd, stdout=subprocess.PIPE,
                                 stderr=subprocess.PIPE, stdin=devnull)
            _cmd_out, _err_out = p.communicate()
            p.wait()
        if p.returncode != 0:
            lang = os.getenv('LANG')
            encoding = lang.rsplit('.')[-1] if lang else 'utf-8'
            raise RuntimeError(str(_err_out, encoding))
        subprocess.check_call(['partprobe', disk_dev])
        if b'msdos' in _cmd_out:
            return False
        if b'gpt' in _cmd_out:
            return True
        raise RuntimeError("Disk '%s' is uninitialized and not usable." %
                           disk_dev) 

# 需要导入模块: import subprocess [as 别名]
# 或者: from subprocess import Popen [as 别名]
def detect_missing_tools(distro):
    tools_dir = os.path.join('data', 'tools')
    if platform.system() == 'Windows':
        _7zip_exe = gen.resource_path(
            os.path.join(tools_dir, '7zip', '7z.exe'))
        e2fsck_exe = gen.resource_path(os.path.join(tools_dir, 'cygwin', 'e2fsck.exe'))
        resize2fs_exe = gen.resource_path(os.path.join(tools_dir, 'cygwin', 'resize2fs.exe'))
    else:
        _7zip_exe = '7z'
        e2fsck_exe = 'e2fsck'
        resize2fs_exe = 'resize2fs'
    if distro not in creator_dict or \
       creator_dict[distro][0] is not create_persistence_using_resize2fs:
        return None
    try:
        with open(os.devnull) as devnull:
            for tool in [e2fsck_exe, resize2fs_exe]:
                p = subprocess.Popen([tool], stdout=devnull, stderr=devnull)
                p.communicate()
    except FileNotFoundError:  # Windows
        return "'%s.exe' is not installed or not available for use." % tool
    except OSError:            # Linux
        return "'%s' is not installed or not available for use." % tool
    return None 

# 需要导入模块: import subprocess [as 别名]
# 或者: from subprocess import Popen [as 别名]
def predict_on_batch(self, inputs):
        # write test fasta file
        temp_input = tempfile.NamedTemporaryFile(suffix = ".txt")
        test_fname = temp_input.name
        encode_sequence_into_fasta_file(ofname = test_fname, seq = inputs.tolist())
        # test gkmsvm
        temp_ofp = tempfile.NamedTemporaryFile(suffix = ".txt")
        threads_option = '-T %s' % (str(self.threads))
        verbosity_option = '-v 0'
        command = ' '.join(['gkmpredict',
                            test_fname,
                            self.model_file,
                            temp_ofp.name,
                            threads_option,
                            verbosity_option])
        #process = subprocess.Popen(command, shell=True)
        #process.wait()  # wait for it to finish
        exit_code = os.system(command)
        temp_input.close()
        assert exit_code == 0
        # get classification results
        temp_ofp.seek(0)
        y = np.array([line.split()[-1] for line in temp_ofp], dtype=float)
        temp_ofp.close()
        return np.expand_dims(y, 1)