本文整理汇总了Python中config.data_dir方法的典型用法代码示例。如果您正苦于以下问题：Python config.data_dir方法的具体用法？Python config.data_dir怎么用？Python config.data_dir使用的例子？那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类config的用法示例。
在下文中一共展示了config.data_dir方法的15个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: test_default
# 需要导入模块: import config [as 别名]
# 或者: from config import data_dir [as 别名]
def test_default(self):
"""$ pdb_occ data/dummy.pdb"""
# Simulate input
# pdb_occ dummy.pdb
sys.argv = ['', os.path.join(data_dir, 'dummy.pdb')]
# Execute the script
self.exec_module()
# Validate results
self.assertEqual(self.retcode, 0) # ensure the program exited OK.
self.assertEqual(len(self.stdout), 204) # no lines deleted
self.assertEqual(len(self.stderr), 0) # no errors
records = (('ATOM', 'HETATM'))
occ_list = [l[54:60] for l in self.stdout if l.startswith(records)]
unique_occ = list(set(map(float, occ_list)))
self.assertEqual(unique_occ, [1.0]) # all occ values changed 示例2: test_default
# 需要导入模块: import config [as 别名]
# 或者: from config import data_dir [as 别名]
def test_default(self):
"""$ pdb_gap data/dummy.pdb"""
# Simulate input
sys.argv = ['', os.path.join(data_dir, 'dummy.pdb')]
# Execute the script
self.exec_module()
# Validate results
self.assertEqual(self.retcode, 0) # ensure the program exited OK.
self.assertEqual(len(self.stdout), 5) # no lines deleted
self.assertEqual(len(self.stderr), 0) # no errors
self.assertEqual(self.stdout,
["B:ARG4 < Seq. Gap > B:GLU6",
"A:ASN1 < 9.42A > A:ASN1",
"C:ARG5 < Seq. Gap > C:GLU2",
"C:GLU2 < 95.75A > C:MET-1",
"Found 4 gap(s) in the structure"]) 示例3: test_default
# 需要导入模块: import config [as 别名]
# 或者: from config import data_dir [as 别名]
def test_default(self):
"""$ pdb_b data/dummy.pdb"""
# Simulate input
# pdb_b -20 dummy.pdb
sys.argv = ['', os.path.join(data_dir, 'dummy.pdb')]
# Execute the script
self.exec_module()
# Validate results
self.assertEqual(self.retcode, 0) # ensure the program exited OK.
self.assertEqual(len(self.stdout), 204) # no lines deleted
self.assertEqual(len(self.stderr), 0) # no errors
records = (('ATOM', 'HETATM'))
bfactors = [l[60:66] for l in self.stdout if l.startswith(records)]
unique_bfac = list(set(map(float, bfactors)))
self.assertEqual(unique_bfac, [10.00]) # all bfactors changed 示例4: test_default
# 需要导入模块: import config [as 别名]
# 或者: from config import data_dir [as 别名]
def test_default(self):
"""$ pdb_tidy data/dummy.pdb"""
fpath = os.path.join(data_dir, 'dummy.pdb')
sys.argv = ['', fpath]
# Execute the script
self.exec_module()
# Validate results
self.assertEqual(self.retcode, 0) # ensure the program exited OK.
self.assertEqual(len(self.stdout), 207)
self.assertEqual(len(self.stderr), 0) # no errors
# Check if we added TER statements correctly
n_ter = len([r for r in self.stdout if r.startswith('TER')])
self.assertEqual(n_ter, 5)
# Check if we added END statements correctly
self.assertTrue(self.stdout[-1].startswith('END')) 示例5: test_valid_ensemble
# 需要导入模块: import config [as 别名]
# 或者: from config import data_dir [as 别名]
def test_valid_ensemble(self):
"""$ pdb_chkensemble data/ensemble_OK.pdb"""
fpath = os.path.join(data_dir, 'ensemble_OK.pdb')
sys.argv = ['', fpath]
# Execute the script
self.exec_module()
# Validate results
self.assertEqual(self.retcode, 0) # ensure the program exited OK.
self.assertEqual(len(self.stdout), 1)
self.assertEqual(len(self.stderr), 0) # no errors
self.assertEqual(self.stdout[0],
"Ensemble of 2 models *seems* OK") 示例6: test_ensemble_diffatom
# 需要导入模块: import config [as 别名]
# 或者: from config import data_dir [as 别名]
def test_ensemble_diffatom(self):
"""$ pdb_chkensemble data/ensemble_error_1.pdb"""
fpath = os.path.join(data_dir, 'ensemble_error_1.pdb')
sys.argv = ['', fpath]
# Execute the script
self.exec_module()
# Validate results
self.assertEqual(self.retcode, 1)
self.assertEqual(len(self.stdout), 0)
self.assertEqual(len(self.stderr), 3)
self.assertEqual(self.stderr,
["Models 1 and 2 differ:",
"Atoms in model 1 only:",
" 2 H ASN A 1 "]) 示例7: test_ensemble_nomodel
# 需要导入模块: import config [as 别名]
# 或者: from config import data_dir [as 别名]
def test_ensemble_nomodel(self):
"""$ pdb_chkensemble data/ensemble_error_2.pdb"""
fpath = os.path.join(data_dir, 'ensemble_error_2.pdb')
sys.argv = ['', fpath]
# Execute the script
self.exec_module()
# Validate results
self.assertEqual(self.retcode, 1)
self.assertEqual(len(self.stdout), 0)
self.assertEqual(len(self.stderr), 1)
self.assertEqual(self.stderr[0],
"ERROR!! MODEL record missing before ATOM at line '3'") 示例8: test_ensemble_noendmdl
# 需要导入模块: import config [as 别名]
# 或者: from config import data_dir [as 别名]
def test_ensemble_noendmdl(self):
"""$ pdb_chkensemble data/ensemble_error_3.pdb"""
fpath = os.path.join(data_dir, 'ensemble_error_3.pdb')
sys.argv = ['', fpath]
# Execute the script
self.exec_module()
# Validate results
self.assertEqual(self.retcode, 1)
self.assertEqual(len(self.stdout), 0)
self.assertEqual(len(self.stderr), 1)
self.assertEqual(self.stderr[0],
"ERROR!! ENDMDL record missing at line '10'") 示例9: test_ensemble_noendmdl2
# 需要导入模块: import config [as 别名]
# 或者: from config import data_dir [as 别名]
def test_ensemble_noendmdl2(self):
"""$ pdb_chkensemble data/ensemble_error_4.pdb"""
fpath = os.path.join(data_dir, 'ensemble_error_4.pdb')
sys.argv = ['', fpath]
# Execute the script
self.exec_module()
# Validate results
self.assertEqual(self.retcode, 1)
self.assertEqual(len(self.stdout), 0)
self.assertEqual(len(self.stderr), 1)
self.assertEqual(self.stderr[0],
"ERROR!! MODEL record found before ENDMDL at line '6'") 示例10: main
# 需要导入模块: import config [as 别名]
# 或者: from config import data_dir [as 别名]
def main():
fdir = config.data_dir
train_data, _ = data_load.load_dataset(
f'{fdir}/train/in.txt', f'{fdir}/train/out.txt')
test_data, _ = data_load.load_dataset(
f'{fdir}/test/in.txt', f'{fdir}/test/out.txt')
print(cal_total_max_len([train_data, test_data])) 示例11: test_one_option
# 需要导入模块: import config [as 别名]
# 或者: from config import data_dir [as 别名]
def test_one_option(self):
"""$ pdb_selatom -CA data/dummy.pdb"""
# Simulate input
# pdb_selatom dummy.pdb
sys.argv = ['', '-CA', os.path.join(data_dir, 'dummy.pdb')]
# Execute the script
self.exec_module()
# Validate results
self.assertEqual(self.retcode, 0) # ensure the program exited OK.
self.assertEqual(len(self.stdout), 30) # selected CA
self.assertEqual(len(self.stderr), 0) # no errors 示例12: test_multiple
# 需要导入模块: import config [as 别名]
# 或者: from config import data_dir [as 别名]
def test_multiple(self):
"""
$ pdb_selatom -CA,CB data/dummy.pdb
"""
sys.argv = ['', '-CA,CB', os.path.join(data_dir, 'dummy.pdb')]
self.exec_module()
self.assertEqual(self.retcode, 0)
self.assertEqual(len(self.stdout), 39) # CA + CB
self.assertEqual(len(self.stderr), 0) 示例13: test_file_not_found
# 需要导入模块: import config [as 别名]
# 或者: from config import data_dir [as 别名]
def test_file_not_found(self):
"""$ pdb_selatom not_existing.pdb"""
afile = os.path.join(data_dir, 'not_existing.pdb')
sys.argv = ['', afile]
self.exec_module()
self.assertEqual(self.retcode, 1) # exit code is 1 (error)
self.assertEqual(len(self.stdout), 0) # nothing written to stdout
self.assertEqual(self.stderr[0][:22],
"ERROR!! File not found") # proper error message 示例14: test_invalid_option
# 需要导入模块: import config [as 别名]
# 或者: from config import data_dir [as 别名]
def test_invalid_option(self):
"""$ pdb_selatom data/dummy.pdb"""
sys.argv = ['', os.path.join(data_dir, 'dummy.pdb')]
self.exec_module()
self.assertEqual(self.retcode, 1)
self.assertEqual(len(self.stdout), 0)
self.assertEqual(self.stderr[0][:37],
"ERROR!! Atom name set cannot be empty") 示例15: test_invalid_option_2
# 需要导入模块: import config [as 别名]
# 或者: from config import data_dir [as 别名]
def test_invalid_option_2(self):
"""$ pdb_selatom -ABCDE data/dummy.pdb"""
sys.argv = ['', '-ABCDE', os.path.join(data_dir, 'dummy.pdb')]
self.exec_module()
self.assertEqual(self.retcode, 1)
self.assertEqual(len(self.stdout), 0)
self.assertEqual(self.stderr[0][:37],
"ERROR!! Atom name is invalid: 'ABCDE'")