Python FilesHelper.check_created方法代码示例

# 需要导入模块: from tvb.core.entities.file.files_helper import FilesHelper [as 别名]
# 或者: from tvb.core.entities.file.files_helper.FilesHelper import check_created [as 别名]
def introduce_unmapped_node(out_pth, conn_zip_pth):
    """
    Creates a connectivity with one extra node in the first position.
    This node represents the unmapped regions.
    :param out_pth: destination path
    :param conn_zip_pth: connectivity zip path.
    """
    fh = FilesHelper()
    tmp_pth = os.path.splitext(out_pth)[0]
    fh.check_created(tmp_pth)
    files = fh.unpack_zip(conn_zip_pth, tmp_pth)
    for file_name in files:
        file_name_low = file_name.lower()
        if "centres" in file_name_low:
            with open(file_name) as f:
                lines = f.readlines()
            with open(file_name, "w") as f:
                f.write("None  0.000000  0.000000  0.000000\n")
                f.writelines(lines)
        elif "weight" in file_name_low or "tract" in file_name_low:
            with open(file_name) as f:
                lines = f.readlines()
                nr_regions = len(lines)
            with open(file_name, "w") as f:
                f.write("   0.0000000e+00" * (nr_regions + 1) + "\n")
                for line in lines:
                    f.write("   0.0000000e+00" + line)
        else:
            raise Exception("this transformation does not support the file " + file_name)

    fh.zip_folder(out_pth, tmp_pth)
    fh.remove_folder(tmp_pth)

# 需要导入模块: from tvb.core.entities.file.files_helper import FilesHelper [as 别名]
# 或者: from tvb.core.entities.file.files_helper.FilesHelper import check_created [as 别名]
def initialize_storage():
    """
    Create Projects storage root folder in case it does not exist.
    """
    try:
        helper = FilesHelper()
        helper.check_created()
    except FileStructureException:
        # Do nothing, because we do not have any UI to display exception
        logger = get_logger("tvb.core.services.initialize_storage")
        logger.exception("Could not make sure the root folder exists!")

# 需要导入模块: from tvb.core.entities.file.files_helper import FilesHelper [as 别名]
# 或者: from tvb.core.entities.file.files_helper.FilesHelper import check_created [as 别名]
    def _build_data_export_folder(self, data):
        """
        This method computes the folder where results of an export operation will be 
        stored for a while (e.g until download is done; or for 1 day)
        """
        now = datetime.now()
        date_str = "%d-%d-%d_%d-%d-%d_%d" % (now.year, now.month, now.day, now.hour,
                                             now.minute, now.second, now.microsecond)
        tmp_str = date_str + "@" + data.gid
        data_export_folder = os.path.join(self.export_folder, tmp_str)
        files_helper = FilesHelper()
        files_helper.check_created(data_export_folder)

        return data_export_folder

# 需要导入模块: from tvb.core.entities.file.files_helper import FilesHelper [as 别名]
# 或者: from tvb.core.entities.file.files_helper.FilesHelper import check_created [as 别名]
class FilesHelperTest(TransactionalTestCase):
    """
    This class contains tests for the tvb.core.entities.file.files_helper module.
    """ 
    PROJECT_NAME = "test_proj"
           
           
    def setUp(self):
        """
        Set up the context needed by the tests.
        """
        self.files_helper = FilesHelper()
        self.test_user = TestFactory.create_user()
        self.test_project = TestFactory.create_project(self.test_user, self.PROJECT_NAME)
    
    
    def tearDown(self):
        """ Remove generated project during tests. """
        self.delete_project_folders()
    
    
    def test_check_created(self):
        """ Test standard flows for check created. """
        self.files_helper.check_created()
        self.assertTrue(os.path.exists(root_storage), "Storage not created!")
        
        self.files_helper.check_created(os.path.join(root_storage, "test"))
        self.assertTrue(os.path.exists(root_storage), "Storage not created!")
        self.assertTrue(os.path.exists(os.path.join(root_storage, "test")), "Test directory not created!")
            
    
    def test_get_project_folder(self):
        """
        Test the get_project_folder method which should create a folder in case
        it doesn't already exist.
        """
        project_path = self.files_helper.get_project_folder(self.test_project)
        self.assertTrue(os.path.exists(project_path), "Folder doesn't exist")
        
        folder_path = self.files_helper.get_project_folder(self.test_project, "43")
        self.assertTrue(os.path.exists(project_path), "Folder doesn't exist")
        self.assertTrue(os.path.exists(folder_path), "Folder doesn't exist")
        
   
    def test_rename_project_structure(self):
        """ Try to rename the folder structure of a project. Standard flow. """
        self.files_helper.get_project_folder(self.test_project)
        path, name = self.files_helper.rename_project_structure(self.test_project.name, "new_name")
        self.assertNotEqual(path, name, "Rename didn't take effect.")


    def test_rename_structure_same_name(self):
        """ Try to rename the folder structure of a project. Same name. """
        self.files_helper.get_project_folder(self.test_project)
        
        self.assertRaises(FileStructureException, self.files_helper.rename_project_structure, 
                          self.test_project.name, self.PROJECT_NAME)


    def test_remove_project_structure(self):
        """ Check that remove project structure deletes the corresponding folder. Standard flow. """
        full_path = self.files_helper.get_project_folder(self.test_project)
        self.assertTrue(os.path.exists(full_path), "Folder was not created.")
        
        self.files_helper.remove_project_structure(self.test_project.name)
        self.assertFalse(os.path.exists(full_path), "Project folder not deleted.")
        
    
    def test_write_project_metadata(self):
        """  Write XML for test-project. """
        self.files_helper.write_project_metadata(self.test_project)
        expected_file = self.files_helper.get_project_meta_file_path(self.PROJECT_NAME)
        self.assertTrue(os.path.exists(expected_file))
        project_meta = XMLReader(expected_file).read_metadata()
        loaded_project = model.Project(None, None)
        loaded_project.from_dict(project_meta, self.test_user.id)
        self.assertEqual(self.test_project.name, loaded_project.name)
        self.assertEqual(self.test_project.description, loaded_project.description)
        self.assertEqual(self.test_project.gid, loaded_project.gid)
        expected_dict = self.test_project.to_dict()[1]
        del expected_dict['last_updated']
        found_dict = loaded_project.to_dict()[1]
        del found_dict['last_updated']
        self.assertDictContainsSubset(expected_dict, found_dict)
        self.assertDictContainsSubset(found_dict, expected_dict)
    
    
    def test_write_operation_metadata(self):
        """
        Test that a correct XML is created for an operation.
        """
        operation = TestFactory.create_operation(test_user=self.test_user, test_project=self.test_project)
        expected_file = self.files_helper.get_operation_meta_file_path(self.PROJECT_NAME, operation.id)
        self.assertFalse(os.path.exists(expected_file))
        self.files_helper.write_operation_metadata(operation)
        self.assertTrue(os.path.exists(expected_file))
        operation_meta = XMLReader(expected_file).read_metadata()
        loaded_operation = model.Operation(None, None, None, None)
        loaded_operation.from_dict(operation_meta, dao)
        expected_dict = operation.to_dict()[1]
#.........这里部分代码省略.........