Python tensorflow.transpose函数代码示例

 def __init__(
         self,
         layer=None,
         act=tf.identity,
         epsilon=1e-5,
         scale_init=tf.constant_initializer(1.0),
         offset_init=tf.constant_initializer(0.0),
         G=32,
         name='group_norm',
 ):
     Layer.__init__(self, name=name)
     self.inputs = layer.outputs
     print("  [TL] GroupNormLayer %s: epsilon:%f act:%s" % (self.name, epsilon, act.__name__))
     inputs_shape = get_shape(layer.outputs)
     G = tf.minimum(G, inputs_shape[-1])
     # [N, H, W, C] to [N, C, H, W]
     temp_input = tf.transpose(self.inputs, [0, 3, 1, 2])
     temp_input = tf.reshape(temp_input, [inputs_shape[0], G, inputs_shape[-1]//G, inputs_shape[1], inputs_shape[2]],
                             name='group_reshape1')
     with tf.variable_scope(name) as vs:
         mean, var = tf.nn.moments(temp_input, [2, 3, 4], keep_dims=True)
         scale = tf.get_variable('scale', shape=[1, inputs_shape[-1], 1, 1], initializer=scale_init, dtype=D_TYPE)
         offset = tf.get_variable('offset', shape=[1, inputs_shape[-1], 1, 1], initializer=offset_init, dtype=D_TYPE)
         temp_input = (temp_input - mean) / tf.sqrt(var + epsilon)
         temp_input = tf.reshape(temp_input, shape=[inputs_shape[0], inputs_shape[-1], inputs_shape[1], inputs_shape[2]],
                                 name='group_reshape2')
         self.outputs = scale * temp_input + offset
         self.outputs = tf.transpose(self.outputs, [0, 2, 3, 1])
         self.outputs = act(self.outputs)
         variables = tf.get_collection(TF_GRAPHKEYS_VARIABLES, scope=vs.name)
     self.all_layers = list(layer.all_layers)
     self.all_params = list(layer.all_params)
     self.all_drop = dict(layer.all_drop)
     self.all_layers.extend([self.outputs])
     self.all_params.extend(variables)

  def _define_distance_to_clusters(self, data):
    """Defines the Mahalanobis distance to the assigned Gaussian."""
    # TODO(xavigonzalvo): reuse (input - mean) * cov^-1 * (input -
    # mean) from log probability function.
    self._all_scores = []
    for shard in data:
      all_scores = []
      shard = tf.expand_dims(shard, 0)
      for c in xrange(self._num_classes):
        if self._covariance_type == FULL_COVARIANCE:
          cov = self._covs[c, :, :]
        elif self._covariance_type == DIAG_COVARIANCE:
          cov = tf.diag(self._covs[c, :])
        inverse = tf.matrix_inverse(cov + self._min_var)
        inv_cov = tf.tile(
            tf.expand_dims(inverse, 0),
            tf.pack([self._num_examples, 1, 1]))
        diff = tf.transpose(shard - self._means[c, :, :], perm=[1, 0, 2])
        m_left = tf.batch_matmul(diff, inv_cov)
        all_scores.append(tf.sqrt(tf.batch_matmul(
            m_left, tf.transpose(diff, perm=[0, 2, 1])
        )))
      self._all_scores.append(tf.reshape(
          tf.concat(1, all_scores),
          tf.pack([self._num_examples, self._num_classes])))

    # Distance to the associated class.
    self._all_scores = tf.concat(0, self._all_scores)
    assignments = tf.concat(0, self.assignments())
    rows = tf.to_int64(tf.range(0, self._num_examples))
    indices = tf.concat(1, [tf.expand_dims(rows, 1),
                            tf.expand_dims(assignments, 1)])
    self._scores = tf.gather_nd(self._all_scores, indices)

    def build_predict(self, Xnew, full_cov=False):
        """
        Xnew is a data matrix, point at which we want to predict

        This method computes

            p(F* | Y )

        where F* are points on the GP at Xnew, Y are noisy observations at X.

        """
        Kx = self.kern.K(self.X, Xnew)
        K = self.kern.K(self.X) + eye(self.num_data) * self.likelihood.variance
        L = tf.cholesky(K)
        A = tf.matrix_triangular_solve(L, Kx, lower=True)
        V = tf.matrix_triangular_solve(L, self.Y - self.mean_function(self.X))
        fmean = tf.matmul(tf.transpose(A), V) + self.mean_function(Xnew)
        if full_cov:
            fvar = self.kern.K(Xnew) - tf.matmul(tf.transpose(A), A)
            shape = tf.pack([1, 1, tf.shape(self.Y)[1]])
            fvar = tf.tile(tf.expand_dims(fvar, 2), shape)
        else:
            fvar = self.kern.Kdiag(Xnew) - tf.reduce_sum(tf.square(A), 0)
            fvar = tf.tile(tf.reshape(fvar, (-1, 1)), [1, self.Y.shape[1]])
        return fmean, fvar

 def chebyshev5(self, x, L, Fout, K, regularization=False):
     N, M, Fin = x.get_shape()
     N, M, Fin = int(N), int(M), int(Fin)
     # Rescale Laplacian and store as a TF sparse tensor. Copy to not modify the shared L.
     L = scipy.sparse.csr_matrix(L)
     L = graph.rescale_L(L, lmax=2)
     L = L.tocoo()
     indices = np.column_stack((L.row, L.col))
     L = tf.SparseTensor(indices, L.data, L.shape)
     L = tf.sparse_reorder(L)
     # Transform to Chebyshev basis
     x0 = tf.transpose(x, perm=[1, 2, 0])  # M x Fin x N
     x0 = tf.reshape(x0, [M, Fin*N])  # M x Fin*N
     x = tf.expand_dims(x0, 0)  # 1 x M x Fin*N
     def concat(x, x_):
         x_ = tf.expand_dims(x_, 0)  # 1 x M x Fin*N
         return tf.concat(0, [x, x_])  # K x M x Fin*N
     if K > 1:
         x1 = tf.sparse_tensor_dense_matmul(L, x0)
         x = concat(x, x1)
     for k in range(2, K):
         x2 = 2 * tf.sparse_tensor_dense_matmul(L, x1) - x0  # M x Fin*N
         x = concat(x, x2)
         x0, x1 = x1, x2
     x = tf.reshape(x, [K, M, Fin, N])  # K x M x Fin x N
     x = tf.transpose(x, perm=[3,1,2,0])  # N x M x Fin x K
     x = tf.reshape(x, [N*M, Fin*K])  # N*M x Fin*K
     # Filter: Fin*Fout filters of order K, i.e. one filterbank per feature pair.
     W = self._weight_variable([Fin*K, Fout], regularization=regularization)
     x = tf.matmul(x, W)  # N*M x Fout
     return tf.reshape(x, [N, M, Fout])  # N x M x Fout

  def body(self, features):
    hp = self.hparams
    block_fns = {
        "residual": residual_block,
        "bottleneck": bottleneck_block,
    }
    assert hp.block_fn in block_fns

    inputs = features["inputs"]

    data_format = "channels_last"
    if hp.use_nchw:
      # Convert from channels_last (NHWC) to channels_first (NCHW). This
      # provides a large performance boost on GPU.
      inputs = tf.transpose(inputs, [0, 3, 1, 2])
      data_format = "channels_first"

    out = resnet_v2(
        inputs,
        block_fns[hp.block_fn],
        hp.layer_sizes,
        hp.filter_sizes,
        data_format,
        is_training=hp.mode == tf.estimator.ModeKeys.TRAIN)

    if hp.use_nchw:
      out = tf.transpose(out, [0, 2, 3, 1])

    return out

def bboxes_jaccard(bbox_ref, bboxes, name=None):
    """Compute jaccard score between a reference box and a collection
    of bounding boxes.

    Args:
      bbox_ref: (N, 4) or (4,) Tensor with reference bounding box(es).
      bboxes: (N, 4) Tensor, collection of bounding boxes.
    Return:
      (N,) Tensor with Jaccard scores.
    """
    with tf.name_scope(name, 'bboxes_jaccard'):
        # Should be more efficient to first transpose.
        bboxes = tf.transpose(bboxes)
        bbox_ref = tf.transpose(bbox_ref)
        # Intersection bbox and volume.
        int_ymin = tf.maximum(bboxes[0], bbox_ref[0])
        int_xmin = tf.maximum(bboxes[1], bbox_ref[1])
        int_ymax = tf.minimum(bboxes[2], bbox_ref[2])
        int_xmax = tf.minimum(bboxes[3], bbox_ref[3])
        h = tf.maximum(int_ymax - int_ymin, 0.)
        w = tf.maximum(int_xmax - int_xmin, 0.)
        # Volumes.
        inter_vol = h * w
        union_vol = -inter_vol \
            + (bboxes[2] - bboxes[0]) * (bboxes[3] - bboxes[1]) \
            + (bbox_ref[2] - bbox_ref[0]) * (bbox_ref[3] - bbox_ref[1])
        jaccard = tfe_math.safe_divide(inter_vol, union_vol, 'jaccard')
        return jaccard

def soft_alignment(U_AP, raw_question_rep, raw_answer_rep, tokens_question_non_zero, tokens_answer_non_zero):
    """Calculate the AP soft-alignment matrix (in a batch-friendly fashion)

    :param U_AP: The AP similarity matrix (to be learned)
    :param raw_question_rep:
    :param raw_answer_rep:
    :param tokens_question_non_zero:
    :param tokens_answer_non_zero:
    :return:
    """
    answer_transposed = tf.transpose(raw_answer_rep, [0, 2, 1])

    # Unfortunately, there is no clean way in TF to multiply a 3d tensor with a 2d tensor. We need to perform some
    # reshaping. Compare solution 2 on
    # http://stackoverflow.com/questions/38235555/tensorflow-matmul-of-input-matrix-with-batch-data
    raw_question_rep_flat = tf.reshape(raw_question_rep, [-1, tf.shape(raw_question_rep)[2]])
    QU_flat = tf.matmul(raw_question_rep_flat, U_AP)
    QU = tf.reshape(QU_flat, [-1, tf.shape(raw_question_rep)[1], tf.shape(raw_question_rep)[2]])
    QUA = tf.batch_matmul(QU, answer_transposed)
    G = tf.nn.tanh(QUA)

    # We are now removing all the fields of G that belong to zero padding. To achieve this, we are determining these
    # fields and adding a value of -2 to all of them (which is guaranteed to result in a smaller number than the minimum
    # of G, which is -1)
    additions_G_question = tf.transpose(
        tf.reshape((tokens_question_non_zero - 1) * 2, [-1, 1, tf.shape(tokens_question_non_zero)[1]]),
        [0, 2, 1]
    )
    additions_G_answer = tf.reshape((tokens_answer_non_zero - 1) * 2, [-1, 1, tf.shape(tokens_answer_non_zero)[1]])

    # G_non_zero contains values of less than -1 for all fields which have a relation to zero-padded token positions
    G_non_zero = G + additions_G_question + additions_G_answer

    return G_non_zero

            def compute_pairwise_distances(x, y):
                """Computes the squared pairwise Euclidean distances between x and y.
                Args:
                  x: a tensor of shape [num_x_samples, num_features]
                  y: a tensor of shape [num_y_samples, num_features]
                Returns:
                  a distance matrix of dimensions [num_x_samples, num_y_samples].
                Raises:
                  ValueError: if the inputs do no matched the specified dimensions.
                """

                if not len(x.get_shape()) == len(y.get_shape()) == 2:
                    raise ValueError('Both inputs should be matrices.')

                if x.get_shape().as_list()[1] != y.get_shape().as_list()[1]:
                    raise ValueError('The number of features should be the same.')

                norm = lambda x: tf.reduce_sum(tf.square(x), 1)

                # By making the `inner' dimensions of the two matrices equal to 1 using
                # broadcasting then we are essentially substracting every pair of rows
                # of x and y.
                # x will be num_samples x num_features x 1,
                # and y will be 1 x num_features x num_samples (after broadcasting).
                # After the substraction we will get a
                # num_x_samples x num_features x num_y_samples matrix.
                # The resulting dist will be of shape num_y_samples x num_x_samples.
                # and thus we need to transpose it again.
                return tf.transpose(norm(tf.expand_dims(x, 2) - tf.transpose(y)))

def inputs(path):
  whole = read_csv(FLAGS.batch_size, path)
  features = tf.transpose(tf.pack(whole[0:FLAGS.max_sentence_len]))
  label = tf.one_hot(
      tf.transpose(tf.pack(whole[FLAGS.max_sentence_len])),
      depth=2)
  return features, label

  def _parser(serialized_example):
    """Parses a single tf.Example into image and label tensors."""
    features = tf.parse_single_example(
        serialized_example,
        features={
            "image": tf.FixedLenFeature([], tf.string),
            "label": tf.FixedLenFeature([], tf.int64),
        })
    image = tf.decode_raw(features["image"], tf.uint8)
    # Initially reshaping to [H, W, C] does not work
    image = tf.reshape(image, [NUM_CHANNEL, IMAGE_HEIGHT, IMAGE_WIDTH])
    # This is needed for `tf.image.resize_image_with_crop_or_pad`
    image = tf.transpose(image, [1, 2, 0])

    image = tf.cast(image, dtype)
    label = tf.cast(features["label"], tf.int32)

    if data_aug:
      image = tf.image.resize_image_with_crop_or_pad(image, IMAGE_HEIGHT + 4,
                                                     IMAGE_WIDTH + 4)
      image = tf.random_crop(image, [IMAGE_HEIGHT, IMAGE_WIDTH, NUM_CHANNEL])
      image = tf.image.random_flip_left_right(image)

    if data_format == "channels_first":
      image = tf.transpose(image, [2, 0, 1])

    if div255:
      image /= 255.

    return image, label

def lid_term(logits, batch_size=100):
    """Calculate LID loss term for a minibatch of logits

    :param logits: 
    :return: 
    """
    # y_pred = tf.nn.softmax(logits)
    y_pred = logits

    # calculate pairwise distance
    r = tf.reduce_sum(y_pred * y_pred, 1)
    # turn r into column vector
    r1 = tf.reshape(r, [-1, 1])
    D = r1 - 2 * tf.matmul(y_pred, tf.transpose(y_pred)) + tf.transpose(r1) + \
        tf.ones([batch_size, batch_size])

    # find the k nearest neighbor
    D1 = -tf.sqrt(D)
    D2, _ = tf.nn.top_k(D1, k=21, sorted=True)
    D3 = -D2[:, 1:]

    m = tf.transpose(tf.multiply(tf.transpose(D3), 1.0 / D3[:, -1]))
    v_log = tf.reduce_sum(tf.log(m + 1e-9), axis=1)  # to avoid nan
    lids = -20 / v_log

    ## batch normalize lids
    # lids = tf.nn.l2_normalize(lids, dim=0, epsilon=1e-12)

    return lids

def skew(inputs, scope="skew"):
  with tf.name_scope(scope):
    batch, height, width, channel = get_shape(inputs) # [batch, height, width, channel]
    rows = tf.split(1, height, inputs) # [batch, 1, width, channel]

    new_width = width + height - 1
    new_rows = []

    for idx, row in enumerate(rows):
      transposed_row = tf.transpose(tf.squeeze(row, [1]), [0, 2, 1]) # [batch, channel, width]
      squeezed_row = tf.reshape(transposed_row, [-1, width]) # [batch*channel, width]
      padded_row = tf.pad(squeezed_row, ((0, 0), (idx, height - 1 - idx))) # [batch*channel, width*2-1]

      unsqueezed_row = tf.reshape(padded_row, [-1, channel, new_width]) # [batch, channel, width*2-1]
      untransposed_row = tf.transpose(unsqueezed_row, [0, 2, 1]) # [batch, width*2-1, channel]

      assert get_shape(untransposed_row) == [batch, new_width, channel], "wrong shape of skewed row"
      new_rows.append(untransposed_row)

    outputs = tf.pack(new_rows, axis=1, name="output")
    assert get_shape(outputs) == [None, height, new_width, channel], "wrong shape of skewed output"

  logger.debug('[skew] %s : %s %s -> %s %s' \
      % (scope, inputs.name, inputs.get_shape(), outputs.name, outputs.get_shape()))
  return outputs

def _multichannel_image_summary(name, images, perm=[0, 3, 1, 2], max_summary_images=16):
    _min = tf.reduce_min(images)
    _max = tf.reduce_max(images)
    _ = tf.mul(tf.div(tf.add(images, _min), tf.sub(_max, _min)), 255.0)
    _ = tf.transpose(_, perm=perm)
    shape = _.get_shape().as_list()
    tf.image_summary(name, tf.reshape(tf.transpose(_, perm=perm), [reduce(lambda x,y:x*y, shape)/(shape[3]*shape[2]), shape[2], shape[3], 1]), max_images=max_summary_images)

def channel_wise_fc_layer(bottom, name, bias=True):
    """
    channel-wise fully connected layer
    """
    _, width, height, n_feat_map = bottom.get_shape().as_list()
    input_reshape = tf.reshape( bottom, [-1, width*height, n_feat_map] )  # order='C'
    input_transpose = tf.transpose( input_reshape, [2,0,1] )  # n_feat_map * batch * d

    with tf.variable_scope(name):
        W = tf.get_variable(
                "W",
                shape=[n_feat_map,width*height, width*height], # n_feat_map * d * d_filter
                initializer=tf.truncated_normal_initializer(0., 0.005))
        output = tf.batch_matmul(input_transpose, W)  # n_feat_map * batch * d_filter

        if bias == True:
            b = tf.get_variable(
                "b",
                shape=width*height,
                initializer=tf.constant_initializer(0.))
            output = tf.nn.bias_add(output, b)

    output_transpose = tf.transpose(output, [1,2,0])  # batch * d_filter * n_feat_map
    output_reshape = tf.reshape( output_transpose, [-1, width, height, n_feat_map] )
    return output_reshape

  def runFiniteDifferences(self, shapes, dtypes=(tf.float32, tf.float64),
                           scalarTest=False):
    with self.test_session(use_gpu=False):
      for shape in shapes:
        for batch in False, True:
          for dtype in dtypes:
            if not scalarTest:
              x = tf.constant(np.random.randn(shape[0], shape[1]), dtype)
              tensor = tf.matmul(x, tf.transpose(x)) / shape[0]
            else:
              # This is designed to be a faster test for larger matrices.
              x = tf.constant(np.random.randn(), dtype)
              R = tf.constant(np.random.randn(shape[0], shape[1]), dtype)
              e = tf.mul(R, x)
              tensor = tf.matmul(e, tf.transpose(e)) / shape[0]

            # Inner-most matrices in tensor are positive definite.
            if batch:
              tensor = tf.tile(tf.expand_dims(tensor, 0), [4, 1, 1])
              op = tf.batch_cholesky
            else:
              op = tf.cholesky

            if not (scalarTest):
              y = op(tensor)
            else:
              y = tf.reduce_mean(op(tensor))
            error = tf.test.compute_gradient_error(x, x._shape_as_list(), y,
                                                   y._shape_as_list())
            tf.logging.info("error = %f", error)
            if dtype == tf.float64:
              self.assertLess(error, 1e-5)
            else:
              self.assertLess(error, 3e-3)