Python FileSpec.status方法代码示例

# 需要导入模块: from taskbuffer.FileSpec import FileSpec [as 别名]
# 或者: from taskbuffer.FileSpec.FileSpec import status [as 别名]
    def prepare(self,app,appsubconfig,appmasterconfig,jobmasterconfig):
        '''prepare the subjob specific configuration'''
 
        from pandatools import Client
        from taskbuffer.JobSpec import JobSpec
        from taskbuffer.FileSpec import FileSpec

        job = app._getParent()
        logger.debug('AthenaPandaRTHandler prepare called for %s', job.getFQID('.'))

#       in case of a simple job get the dataset content, otherwise subjobs are filled by the splitter
        if job.inputdata and not job._getRoot().subjobs:

            if not job.inputdata.names:
                
                contents = job.inputdata.get_contents(overlap=False, size=True)

                for ds in contents.keys():

                    for f in contents[ds]:
                        job.inputdata.guids.append( f[0] )
                        job.inputdata.names.append( f[1][0] )
                        job.inputdata.sizes.append( f[1][1] )
                        job.inputdata.checksums.append( f[1][2] )
                        job.inputdata.scopes.append( f[1][3] )


        site = job._getRoot().backend.site
        job.backend.site = site
        job.backend.actualCE = site
        cloud = job._getRoot().backend.requirements.cloud
        job.backend.requirements.cloud = cloud

#       if no outputdata are given
        if not job.outputdata:
            job.outputdata = DQ2OutputDataset()
            job.outputdata.datasetname = job._getRoot().outputdata.datasetname
        #if not job.outputdata.datasetname:
        else:
            job.outputdata.datasetname = job._getRoot().outputdata.datasetname

        if not job.outputdata.datasetname:
            raise ApplicationConfigurationError('DQ2OutputDataset has no datasetname')

        jspec = JobSpec()
        jspec.jobDefinitionID   = job._getRoot().id
        jspec.jobName           = commands.getoutput('uuidgen 2> /dev/null')
        jspec.transformation    = '%s/runGen-00-00-02' % Client.baseURLSUB
        if job.inputdata:
            jspec.prodDBlock    = job.inputdata.dataset[0]
        else:
            jspec.prodDBlock    = 'NULL'
        jspec.destinationDBlock = job.outputdata.datasetname
        if job.outputdata.location:
            if not job._getRoot().subjobs or job.id == 0:
                logger.warning('You have specified outputdata.location. Note that Panda may not support writing to a user-defined output location.')
            jspec.destinationSE = job.outputdata.location
        else:
            jspec.destinationSE = site
        jspec.prodSourceLabel   = configPanda['prodSourceLabelRun']
        jspec.processingType    = configPanda['processingType']
        jspec.assignedPriority  = configPanda['assignedPriorityRun']
        jspec.cloud             = cloud
        # memory
        if job.backend.requirements.memory != -1:
            jspec.minRamCount = job.backend.requirements.memory
        # cputime     
        if job.backend.requirements.cputime != -1:
            jspec.maxCpuCount = job.backend.requirements.cputime
        jspec.computingSite     = site

#       library (source files)
        if job.backend.libds:
            flib = FileSpec()
            flib.lfn            = self.fileBO.lfn
            flib.GUID           = self.fileBO.GUID
            flib.type           = 'input'
            flib.status         = self.fileBO.status
            flib.dataset        = self.fileBO.destinationDBlock
            flib.dispatchDBlock = self.fileBO.destinationDBlock
            jspec.addFile(flib)
        elif job.backend.bexec:
            flib = FileSpec()
            flib.lfn            = self.library
            flib.type           = 'input'
            flib.dataset        = self.libDataset
            flib.dispatchDBlock = self.libDataset
            jspec.addFile(flib)

#       input files FIXME: many more input types
        if job.inputdata:            
            for guid, lfn, size, checksum, scope in zip(job.inputdata.guids,job.inputdata.names,job.inputdata.sizes, job.inputdata.checksums, job.inputdata.scopes):
                finp = FileSpec()
                finp.lfn            = lfn
                finp.GUID           = guid
                finp.scope          = scope
                
#            finp.fsize =
#            finp.md5sum =
                finp.dataset        = job.inputdata.dataset[0]
#.........这里部分代码省略.........

# 需要导入模块: from taskbuffer.FileSpec import FileSpec [as 别名]
# 或者: from taskbuffer.FileSpec.FileSpec import status [as 别名]
    def prepare(self,app,appconfig,appmasterconfig,jobmasterconfig):
        '''prepare the subjob specific configuration'''
 
        # PandaTools
        from pandatools import Client
        from pandatools import AthenaUtils
        from taskbuffer.JobSpec import JobSpec
        from taskbuffer.FileSpec import FileSpec

        job = app._getParent()
        logger.debug('AthenaMCPandaRTHandler prepare called for %s', job.getFQID('.'))
        
        try:
            assert self.outsite
        except:
            logger.error("outsite not set. Aborting")
            raise Exception()
        
        job.backend.site = self.outsite
        job.backend.actualCE = self.outsite
        cloud = job._getRoot().backend.requirements.cloud
        job.backend.requirements.cloud = cloud
        

        # now just filling the job from AthenaMC data
        
        jspec = JobSpec()
        jspec.jobDefinitionID   = job._getRoot().id
        jspec.jobName           = commands.getoutput('uuidgen 2> /dev/null')  
        jspec.AtlasRelease      = 'Atlas-%s' % app.atlas_rel
        
        if app.transform_archive:
            jspec.homepackage       = 'AnalysisTransforms'+app.transform_archive
        elif app.prod_release:
            jspec.homepackage       = 'AnalysisTransforms-AtlasProduction_'+str(app.prod_release)
        jspec.transformation    = '%s/runAthena-00-00-11' % Client.baseURLSUB
            
        #---->????  prodDBlock and destinationDBlock when facing several input / output datasets?

        jspec.prodDBlock    = 'NULL'
        if job.inputdata and len(app.inputfiles)>0 and app.inputfiles[0] in app.dsetmap:
            jspec.prodDBlock    = app.dsetmap[app.inputfiles[0]]

        # How to specify jspec.destinationDBlock  when more than one type of output is available? Panda prod jobs seem to specify only the last output dataset
        outdset=""
        for type in ["EVNT","RDO","HITS","AOD","ESD","NTUP"]:
            if type in app.outputpaths.keys():
                outdset=string.replace(app.outputpaths[type],"/",".")
                outdset=outdset[1:-1]
                break
        if not outdset:
            try:
                assert len(app.outputpaths.keys())>0
            except:
                logger.error("app.outputpaths is empty: check your output datasets")
                raise
            type=app.outputpaths.keys()[0]
            outdset=string.replace(app.outputpaths[type],"/",".")
            outdset=outdset[1:-1]
            
        jspec.destinationDBlock = outdset
        jspec.destinationSE = self.outsite
        jspec.prodSourceLabel   = 'user'
        jspec.assignedPriority  = 1000
        jspec.cloud             = cloud
        # memory
        if job.backend.requirements.memory != -1:
            jspec.minRamCount = job.backend.requirements.memory
        jspec.computingSite     = self.outsite
        jspec.cmtConfig         = AthenaUtils.getCmtConfig(athenaVer=app.atlas_rel)
#       library (source files)
        flib = FileSpec()
        flib.lfn            = self.library
#        flib.GUID           = 
        flib.type           = 'input'
#        flib.status         = 
        flib.dataset        = self.libDataset
        flib.dispatchDBlock = self.libDataset
        jspec.addFile(flib)

        #       input files FIXME: many more input types
        for lfn in app.inputfiles:
            useguid=app.turls[lfn].replace("guid:","")
            finp = FileSpec()
            finp.lfn            = lfn
            finp.GUID           = useguid
            finp.dataset        = app.dsetmap[lfn]
            finp.prodDBlock     = app.dsetmap[lfn]
            finp.prodDBlockToken = 'local'
            finp.dispatchDBlock = app.dsetmap[lfn]
            finp.type           = 'input'
            finp.status         = 'ready'
            jspec.addFile(finp)
        # add dbfiles if any:
        for lfn in app.dbfiles:
            useguid=app.dbturls[lfn].replace("guid:","")
            finp = FileSpec()
            finp.lfn            = lfn
            finp.GUID           = useguid
            finp.dataset        = app.dsetmap[lfn]
#.........这里部分代码省略.........

# 需要导入模块: from taskbuffer.FileSpec import FileSpec [as 别名]
# 或者: from taskbuffer.FileSpec.FileSpec import status [as 别名]
    fileOZ.dataset           = job.destinationDBlock
    fileOZ.type = 'output'
    job.addFile(fileOZ)

    files = [
        'testIdeal_06.005001.pythia_minbias.recon.AOD.v12000103._00001.pool.root.1',
        'testIdeal_06.005001.pythia_minbias.recon.AOD.v12000103._00002.pool.root.1',
        'testIdeal_06.005001.pythia_minbias.recon.AOD.v12000103._00003.pool.root.1',
        ]
    for lfn in files:
        fileI = FileSpec()
        fileI.dataset    = job.prodDBlock
        fileI.prodDBlock = job.prodDBlock
        fileI.lfn = lfn
        fileI.type = 'input'
        fileI.status     = 'ready'
        job.addFile(fileI)

    fileL = FileSpec()
    fileL.dataset    = 'user.TadashiMaeno.lib._000157'
    fileL.prodDBlock = 'user.TadashiMaeno.lib._000157'
    fileL.lfn = 'user.TadashiMaeno.lib._000157.lib.tgz'
    fileL.type = 'input'
    fileL.status     = 'ready'
    job.addFile(fileL)

    job.jobParameters=""" -l user.TadashiMaeno.lib._000157.lib.tgz -r run/ -j " AnalysisSkeleton_jobOptions.py" -i "['testIdeal_06.005001.pythia_minbias.recon.AOD.v12000103._00001.pool.root.1', 'testIdeal_06.005001.pythia_minbias.recon.AOD.v12000103._00002.pool.root.1', 'testIdeal_06.005001.pythia_minbias.recon.AOD.v12000103._00003.pool.root.1']" -o "{'AANT': [('AANTupleStream', 'AANT', '%s')]}" """ % fileOZ.lfn 

    jobList.append(job)
    
    

# 需要导入模块: from taskbuffer.FileSpec import FileSpec [as 别名]
# 或者: from taskbuffer.FileSpec.FileSpec import status [as 别名]
    file.destinationDBlock = job.destinationDBlock
    file.destinationSE     = job.destinationSE
    file.dataset           = job.destinationDBlock
    file.type = 'output'
    job.addFile(file)
    
    fileOL = FileSpec()
    fileOL.lfn = "%s.job.log.tgz" % job.jobName
    fileOL.destinationDBlock = job.destinationDBlock
    fileOL.destinationSE     = job.destinationSE
    fileOL.dataset           = job.destinationDBlock
    fileOL.type = 'log'
    job.addFile(fileOL)

    fileL = FileSpec()
    fileL.dataset    = 'user.TadashiMaeno.acas0003.lib._000134'
    fileL.prodDBlock = fileL.dataset
    fileL.lfn        = 'user.TadashiMaeno.acas0003.lib._000134.lib.tgz'
    fileL.type       = 'input'
    fileL.status     = 'ready'
    job.addFile(fileL)
    
    job.jobParameters=("-l %s " % fileL.lfn) + """-r run/ -j "%20AnalysisSkeleton_topOptions.py" -i "[]" -m "[]" -n "[]" -o "{'AANT': [('AANTupleStream', 'AANT', """ + ("""'%s')]}" -c""" % file.lfn) 
    jobList.append(job)

s,o = Client.submitJobs(jobList)
print "---------------------"
print s
for x in o:
    print "PandaID=%s" % x[0]

# 需要导入模块: from taskbuffer.FileSpec import FileSpec [as 别名]
# 或者: from taskbuffer.FileSpec.FileSpec import status [as 别名]
def send_job(jobid, siteid):
    _logger.debug('Jobid: ' + str(jobid))

    site = sites_.get(siteid)

    job = jobs_.get(int(jobid))
    cont = job.container
    files_catalog = cont.files

    fscope = getScope(job.owner.username)
    datasetName = '{}:{}'.format(fscope, cont.guid)

    distributive = job.distr.name
    release = job.distr.release

    # Prepare runScript
    parameters = job.distr.command
    parameters = parameters.replace("$COMMAND$", job.params)
    parameters = parameters.replace("$USERNAME$", job.owner.username)
    parameters = parameters.replace("$WORKINGGROUP$", job.owner.working_group)

    # Prepare metadata
    metadata = dict(user=job.owner.username)

    # Prepare PanDA Object
    pandajob = JobSpec()
    pandajob.jobDefinitionID = int(time.time()) % 10000
    pandajob.jobName = cont.guid
    pandajob.transformation = client_config.DEFAULT_TRF
    pandajob.destinationDBlock = datasetName
    pandajob.destinationSE = site.se
    pandajob.currentPriority = 1000
    pandajob.prodSourceLabel = 'user'
    pandajob.computingSite = site.ce
    pandajob.cloud = 'RU'
    pandajob.VO = 'atlas'
    pandajob.prodDBlock = "%s:%s" % (fscope, pandajob.jobName)
    pandajob.coreCount = job.corecount
    pandajob.metadata = json.dumps(metadata)
    #pandajob.workingGroup = job.owner.working_group

    if site.encode_commands:
        # It requires script wrapper on cluster side
        pandajob.jobParameters = '%s %s %s "%s"' % (cont.guid, release, distributive, parameters)
    else:
        pandajob.jobParameters = parameters


    has_input = False
    for fcc in files_catalog:
        if fcc.type == 'input':
            f = fcc.file
            guid = f.guid
            fileIT = FileSpec()
            fileIT.lfn = f.lfn
            fileIT.dataset = pandajob.prodDBlock
            fileIT.prodDBlock = pandajob.prodDBlock
            fileIT.type = 'input'
            fileIT.scope = fscope
            fileIT.status = 'ready'
            fileIT.GUID = guid
            pandajob.addFile(fileIT)

            has_input = True
        if fcc.type == 'output':
            f = fcc.file
            fileOT = FileSpec()
            fileOT.lfn = f.lfn
            fileOT.destinationDBlock = pandajob.prodDBlock
            fileOT.destinationSE = pandajob.destinationSE
            fileOT.dataset = pandajob.prodDBlock
            fileOT.type = 'output'
            fileOT.scope = fscope
            fileOT.GUID = f.guid
            pandajob.addFile(fileOT)

            # Save replica meta
            fc.new_replica(f, site)

    if not has_input:
        # Add fake input
        fileIT = FileSpec()
        fileIT.lfn = "fake.input"
        fileIT.dataset = pandajob.prodDBlock
        fileIT.prodDBlock = pandajob.prodDBlock
        fileIT.type = 'input'
        fileIT.scope = fscope
        fileIT.status = 'ready'
        fileIT.GUID = "fake.guid"
        pandajob.addFile(fileIT)

    # Prepare lof file
    fileOL = FileSpec()
    fileOL.lfn = "%s.log.tgz" % pandajob.jobName
    fileOL.destinationDBlock = pandajob.destinationDBlock
    fileOL.destinationSE = pandajob.destinationSE
    fileOL.dataset = '{}:logs'.format(fscope)
    fileOL.type = 'log'
    fileOL.scope = 'panda'
    pandajob.addFile(fileOL)
#.........这里部分代码省略.........