Python models.ExperimentParameterSet类代码示例

def map_form_to_schemas(extraInfo, publication):
    for form_id, form in extraInfo.iteritems():
        try:  # Ignore form if no schema exists with this name
            schema = Schema.objects.get(namespace=form['schema'])
        except Schema.DoesNotExist:
            continue
        parameter_set = ExperimentParameterSet(
            schema=schema, experiment=publication)
        parameter_set.save()
        for key, value in form.iteritems():
            if key != 'schema':
                try:  # Ignore field if parameter name (key) doesn't match
                    parameter_name = ParameterName.objects.get(
                        schema=schema, name=key)
                    if parameter_name.isNumeric():
                        parameter = ExperimentParameter(
                            name=parameter_name,
                            parameterset=parameter_set,
                            numerical_value=float(value))
                    elif parameter_name.isLongString() or \
                            parameter_name.isString() or \
                            parameter_name.isURL() or \
                            parameter_name.isLink() or \
                            parameter_name.isFilename():
                        parameter = ExperimentParameter(
                            name=parameter_name,
                            parameterset=parameter_set,
                            string_value=str(value))
                    else:
                        # Shouldn't happen, but here in case the parameter type
                        # is non-standard
                        continue
                    parameter.save()
                except ParameterName.DoesNotExist:
                    pass

    def save_rif_cs_profile(self, experiment, profile):
        """
        Save selected profile choice as experiment parameter
        """
        namespace = "http://monash.edu.au/rif-cs/profile/"
        schema = None
        try:
            schema = Schema.objects.get(
                namespace__exact=namespace)
        except Schema.DoesNotExist:
            logger.debug('Schema ' + namespace +
            ' does not exist. Creating.')
            schema = Schema(namespace=namespace)
            schema.save()

        parametername = ParameterName.objects.get(
            schema__namespace__exact=schema.namespace,
            name="profile")

        parameterset = None
        try:
            parameterset = \
                         ExperimentParameterSet.objects.get(\
                                schema=schema,
                                experiment=experiment)

        except ExperimentParameterSet.DoesNotExist, e:
            parameterset = ExperimentParameterSet(\
                                schema=schema,
                                experiment=experiment)

            parameterset.save()

def create_draft_publication(user, publication_title, publication_description):
    # Note: Maybe this logic can be taken from the tardis_portal/views.py?

    experiment = Experiment(created_by=user,
                            title=publication_title,
                            description=publication_description)
    experiment.save()

    ObjectACL(content_object=experiment,
              pluginId=django_user,
              entityId=str(user.id),
              canRead=True,
              canWrite=False,
              canDelete=False,
              isOwner=True,
              aclOwnershipType=ObjectACL.OWNER_OWNED).save()

    ObjectACL(content_object=experiment,
              pluginId=django_group,
              entityId=str(
                  Group.objects.get_or_create(
                      name=getattr(
                          settings, 'PUBLICATION_OWNER_GROUP',
                          default_settings.PUBLICATION_OWNER_GROUP))[0].id),
              canRead=True,
              canWrite=True,
              canDelete=True,
              isOwner=True,
              aclOwnershipType=ObjectACL.OWNER_OWNED).save()

    publication_schema = Schema.objects.get(
        namespace=getattr(settings, 'PUBLICATION_SCHEMA_ROOT',
                          default_settings.PUBLICATION_SCHEMA_ROOT))

    # Attach draft schema
    draft_publication_schema = Schema.objects.get(
        namespace=getattr(settings, 'PUBLICATION_DRAFT_SCHEMA',
                          default_settings.PUBLICATION_DRAFT_SCHEMA))
    ExperimentParameterSet(schema=draft_publication_schema,
                           experiment=experiment).save()

    # Attach root schema and blank form_state parameter
    publication_root_schema = Schema.objects.get(
        namespace=getattr(settings, 'PUBLICATION_SCHEMA_ROOT',
                          default_settings.PUBLICATION_SCHEMA_ROOT))
    publication_root_parameter_set = ExperimentParameterSet(
        schema=publication_schema,
        experiment=experiment)
    publication_root_parameter_set.save()
    form_state_param_name = ParameterName.objects.get(
        schema=publication_root_schema, name='form_state')
    ExperimentParameter(name=form_state_param_name,
                        parameterset=publication_root_parameter_set).save()

    return experiment

def _create_related_info(request, experiment_id):
    if not authz.has_write_permissions(request, experiment_id):
        return return_response_error(request)
    form = RelatedInfoForm(json.loads(request.body))
    if not form.is_valid():
        return HttpResponse('', status=400)
    ps = ExperimentParameterSet(experiment_id=experiment_id,
                                schema=_get_schema())
    ps.save()
    ParameterSetManager(ps).set_params_from_dict(form.cleaned_data)
    return HttpResponse(json.dumps(_get_dict_from_ps(ps)),
                        content_type='application/json; charset=utf-8',
                        status=201)

 def _create(self, request, experiment_id):
     from tardis.tardis_portal.auth.decorators import has_experiment_write
     if not has_experiment_write(request, experiment_id):
         return return_response_error(request)
     form = self.form_cls(json.loads(request.body))
     if not form.is_valid():
         return HttpResponse('', status=400)
     ps = ExperimentParameterSet(experiment_id=experiment_id,
                                 schema=self.schema)
     ps.save()
     ParameterSetManager(ps).set_params_from_dict(form.cleaned_data)
     return HttpResponse(json.dumps(self._get_dict_from_ps(ps)),
                         content_type='application/json; charset=utf-8',
                         status=201)

def set_embargo_release_date(publication, release_date):
    pub_schema_root = Schema.objects.get(
        namespace=getattr(settings, 'PUBLICATION_SCHEMA_ROOT',
                          default_settings.PUBLICATION_SCHEMA_ROOT))
    pub_schema_root_parameter_set = ExperimentParameterSet(
        schema=pub_schema_root,
        experiment=publication)
    pub_schema_root_parameter_set.save()
    embargo_parameter_name = ParameterName.objects.get(
        schema=pub_schema_root,
        name='embargo')
    ExperimentParameter(name=embargo_parameter_name,
                        parameterset=pub_schema_root_parameter_set,
                        datetime_value=release_date).save()

    def add_info(self, cleaned_data):
        logger.debug('adding info')
        logger.debug(cleaned_data)

        type = cleaned_data['type']
        identifier_type = cleaned_data['identifier_type']
        identifier = cleaned_data['identifier']
        title = cleaned_data['title']
        notes = cleaned_data['notes']

        eps = ExperimentParameterSet(experiment_id=self.experiment_id, schema=self.schema)
        eps.save()

        _maybe_add(eps, self.type_name, type)
        _maybe_add(eps, self.identifier_type_name, identifier_type, force=True)
        _maybe_add(eps, self.identifier_name, identifier, force=True)
        _maybe_add(eps, self.title_name, title)
        _maybe_add(eps, self.notes_name, notes)

 def _save_party_refs(self,  party, party_relation):
     """ Save party and party relation information as parameters on the 
         experiment
     """
     namespace = "http://rmit.edu.au/rif-cs/party/1.0/"
     logger.debug("saving party")
     schema = None
     try:
         schema = Schema.objects.get(
             namespace__exact=namespace)
     except Schema.DoesNotExist:
         logger.debug('Schema ' + namespace +
         ' does not exist. Creating.')
         schema = Schema(namespace=namespace)
         schema.save()
     exp = Experiment.objects.get(pk=self.experiment_id)    
     party_id_param = self._make_param(schema=schema, 
                                       name="party_id",
                                       paramtype=ParameterName.NUMERIC)
     relation_param = self._make_param(schema=schema, 
                                       name="relationtocollection_id",
                                       paramtype=ParameterName.STRING)                    
     parameterset = ExperimentParameterSet(schema=schema, experiment=exp)
     parameterset.save()    
     ep = ExperimentParameter.objects.filter(name=party_id_param,
         parameterset=parameterset,
         parameterset__experiment=exp)
     for p in ep:
         p.delete()
     ep = ExperimentParameter(
         parameterset=parameterset,
         name=party_id_param,
         numerical_value=party.pk)
     ep.save()                        
     ep = ExperimentParameter.objects.filter(name=relation_param,
         parameterset=parameterset,
         parameterset__experiment=exp)
     for p in ep:
         p.delete()
     ep = ExperimentParameter(
         parameterset=parameterset,
         name=relation_param,
         string_value=party_relation)
     ep.save()

def synchrotron_search_epn(publication):
    # *** Synchrotron specific ***
    # Search for beamline/EPN information associated with each dataset
    # and add to the publication.
    try:
        synch_epn_schema = Schema.objects.get(
            namespace='http://www.tardis.edu.au/schemas/as/'
                      'experiment/2010/09/21')
        datasets = Dataset.objects.filter(experiments=publication)
        synch_experiments = Experiment.objects.filter(
            datasets__in=datasets,
            experimentparameterset__schema=synch_epn_schema).exclude(
            pk=publication.pk).distinct()
        for exp in [s for s in
                    synch_experiments if not s.is_publication()]:
            epn = ExperimentParameter.objects.get(
                name__name='EPN',
                name__schema=synch_epn_schema,
                parameterset__experiment=exp).string_value
            beamline = ExperimentParameter.objects.get(
                name__name='beamline',
                name__schema=synch_epn_schema,
                parameterset__experiment=exp).string_value

            epn_parameter_set = ExperimentParameterSet(
                schema=synch_epn_schema,
                experiment=publication)
            epn_parameter_set.save()
            epn_copy = ExperimentParameter(
                name=ParameterName.objects.get(
                    name='EPN', schema=synch_epn_schema),
                parameterset=epn_parameter_set)
            epn_copy.string_value = epn
            epn_copy.save()
            beamline_copy = ExperimentParameter(
                name=ParameterName.objects.get(
                    name='beamline', schema=synch_epn_schema),
                parameterset=epn_parameter_set)
            beamline_copy.string_value = beamline
            beamline_copy.save()
    except Schema.DoesNotExist:
        pass

    def __init__(self, experiment_id, create=False):
        self.experiment = Experiment.objects.get(pk=experiment_id)

        parametersets = ExperimentParameterSet.objects.filter(
            schema__namespace=NAMESPACE, experiment__id=experiment_id)

        self.schema, _ = Schema.objects.get_or_create(namespace=NAMESPACE, name='Embargo Details')
        self.expiry_date, _ = ParameterName.objects.get_or_create(schema=self.schema, name=EXPIRY_DATE_KEY, full_name='Expiry', immutable=True, data_type=ParameterName.DATETIME)
        self.never_expire, _ = ParameterName.objects.get_or_create(schema=self.schema, name=NEVER_EXPIRE_KEY, full_name='Never Expires', immutable=True, data_type=ParameterName.STRING)

        if len(parametersets) == 1:
            self.parameterset = parametersets[0]
        elif create:
            self.parameterset = ExperimentParameterSet(experiment=self.experiment, schema=self.schema)
            self.parameterset.save()
        else:
            self.parameterset = None

class EmbargoHandler(object):

    def __init__(self, experiment_id, create=False):
        self.experiment = Experiment.objects.get(pk=experiment_id)

        parametersets = ExperimentParameterSet.objects.filter(
            schema__namespace=NAMESPACE, experiment__id=experiment_id)

        self.schema, _ = Schema.objects.get_or_create(namespace=NAMESPACE, name='Embargo Details')
        self.expiry_date, _ = ParameterName.objects.get_or_create(schema=self.schema, name=EXPIRY_DATE_KEY, full_name='Expiry', immutable=True, data_type=ParameterName.DATETIME)
        self.never_expire, _ = ParameterName.objects.get_or_create(schema=self.schema, name=NEVER_EXPIRE_KEY, full_name='Never Expires', immutable=True, data_type=ParameterName.STRING)

        if len(parametersets) == 1:
            self.parameterset = parametersets[0]
        elif create:
            self.parameterset = ExperimentParameterSet(experiment=self.experiment, schema=self.schema)
            self.parameterset.save()
        else:
            self.parameterset = None

    def never_expires(self):
        never_expire = self._get_or_none(NEVER_EXPIRE_KEY)
        if never_expire:
            return True
        expiry_date = self._get_or_none(EXPIRY_DATE_KEY)
        if expiry_date:
            return False
        else:
            return self.experiment.end_time == None

    def has_any_expiry(self):
        return not self.never_expires()

    def can_be_defaulted(self):
        expiry_date = self._get_or_none(EXPIRY_DATE_KEY)
        never_expires = self._get_or_none(NEVER_EXPIRE_KEY)
        return never_expires or expiry_date

    def because_no_end_date(self):
        if self._get_or_none(NEVER_EXPIRE_KEY):
            return False
        return self.experiment.end_time == None

    def get_expiry_date(self):
        ''' returns calculated or explicit expiry or None '''
        import datetime
        if self.never_expires():
            return None

        explicit_expiry = self._get_or_none(EXPIRY_DATE_KEY)
        if explicit_expiry:
            return explicit_expiry.datetime_value
        else:
            return self.experiment.end_time + datetime.timedelta(settings.EMBARGO_DAYS)

    def _get_or_none(self, name):
        if not self.parameterset:
            return None
        params = self.parameterset.experimentparameter_set.filter(name__name=name)
        if params.count() == 0:
            return None
        else:
            return params[0]

    def prevent_expiry(self):
        # delete any current expiry dates
        # set never_expires = True
        logger.fatal('preventing expiry')
        if not self.parameterset:
            raise Exception('incorrectly initialised, call with create=True')
        params = self.parameterset.experimentparameter_set
        params.all().delete()
        param = ExperimentParameter(name=self.never_expire, string_value='True', parameterset=self.parameterset)
        param.save()

        self.experiment.public = False
        self.experiment.save()

    def reset_to_default(self):
        import datetime
        if self.parameterset:
            self.parameterset.delete()

            expiry_date = self.get_expiry_date()
            if expiry_date and expiry_date.date() < datetime.date.today():
                self.experiment.public = True
            else:
                self.experiment.public = False
            self.experiment.save()

        else:
            logger.warn('tried to delete parameterset that does not exist')

    def set_expiry(self, date_string):
        if not self.parameterset:
            raise Exception('incorrectly initialised, call with create=True')

        params = self.parameterset.experimentparameter_set
        params.all().delete()
        import datetime
#.........这里部分代码省略.........

class ParameterSetManager(object):

    parameterset = None
    parameters = None       # queryset of parameters
    blank_param = None

    # parameterset OR schema / datafile / dataset / experiment
    # delete dataset creation code
    # make parameterset / object arguments generic and test type
    # create function to return generic parameter type for setting/getting
    def __init__(self, parameterset=None, parentObject=None,
                 schema=None):
        """
        instantiate new task or existing ParameterSet
        :param dataset: optional parameter to instanciate task from
          metadata, will be tested for completeness and copied into
          new task if complete
        :type dataset: Dataset
        """

        if parameterset:
            self.parameterset = parameterset
            self.schema = self.parameterset.schema
            self.namespace = self.schema.namespace

            if type(self.parameterset).__name__ == "DatafileParameterSet":
                self.parameters = DatafileParameter.objects.filter(\
                   parameterset=self.parameterset).order_by('name__full_name')

                self.blank_param = DatafileParameter

            elif type(self.parameterset).__name__ == "DatasetParameterSet":
                self.parameters = DatasetParameter.objects.filter(\
                   parameterset=self.parameterset).order_by('name__full_name')

                self.blank_param = DatasetParameter

            elif type(self.parameterset).__name__ == "ExperimentParameterSet":
                self.parameters = ExperimentParameter.objects.filter(\
                   parameterset=self.parameterset).order_by('name__full_name')

                self.blank_param = ExperimentParameter

            else:
                raise TypeError("Invalid parameterset object given.")

        elif parentObject and schema:

            self.namespace = schema

            if type(parentObject).__name__ == "Dataset_File":
                self.parameterset = DatafileParameterSet(
                    schema=self.get_schema(), dataset_file=parentObject)

                self.parameterset.save()

                self.parameters = DatafileParameter.objects.filter(
                    parameterset=self.parameterset)

                self.blank_param = DatafileParameter

            elif type(parentObject).__name__ == "Dataset":
                self.parameterset = DatasetParameterSet(
                    schema=self.get_schema(), dataset=parentObject)

                self.parameterset.save()

                self.parameters = DatasetParameter.objects.filter(
                    parameterset=self.parameterset)

                self.blank_param = DatasetParameter

            elif type(parentObject).__name__ == "Experiment":
                self.parameterset = ExperimentParameterSet(
                    schema=self.get_schema(), experiment=parentObject)

                self.parameterset.save()

                self.parameters = ExperimentParameter.objects.filter(
                    parameterset=self.parameterset)

                self.blank_param = ExperimentParameter

            else:
                raise TypeError("Invalid parent object." +
                    "Must be an experiment/dataset/datafile")

        else:
            raise TypeError("Missing arguments")

    def get_schema(self):
        try:
            schema = Schema.objects.get(
                namespace=self.namespace)
        except ObjectDoesNotExist:
            schema = Schema()
            schema.namespace = self.namespace
            schema.save()
            self.schema = schema
        return schema
#.........这里部分代码省略.........

 def delete_info(self, parameterset_id):
     eps = ExperimentParameterSet(experiment_id=self.experiment_id, schema=self.schema, pk=parameterset_id)
     eps.delete()

class ParameterSetManager(object):

    parameterset = None
    parameters = None       # queryset of parameters
    blank_param = None

    # parameterset OR schema / datafile / dataset / experiment
    # delete dataset creation code
    # make parameterset / object arguments generic and test type
    # create function to return generic parameter type for setting/getting
    #
    # 2011/07/20 (Ryan Braganza)
    # changed type checking from:
    #     type(self.parameterset).__name__ == 'ClassName'
    # to:
    #     isinstance(self.parameterset, Class)
    # This is to solve an issue with models using deferred fields.
    # When using deferred fields, a subclass is used, so the class name
    # will not match when using type(self.parameterset).__name__
    # isinstance deals with inheritance appropriately here
    def __init__(self, parameterset=None, parentObject=None,
                 schema=None):
        """
        instantiate new task or existing ParameterSet
        :param dataset: optional parameter to instanciate task from
          metadata, will be tested for completeness and copied into
          new task if complete
        :type dataset: Dataset
        :param schema: Schema namespace
        :type schema: string
        """

        if parameterset:
            self.parameterset = parameterset
            self.schema = self.parameterset.schema
            self.namespace = self.schema.namespace

            if isinstance(self.parameterset, DatafileParameterSet):
                self.parameters = DatafileParameter.objects.filter(\
                   parameterset=self.parameterset).order_by('name__full_name')

                self.blank_param = DatafileParameter

            elif isinstance(self.parameterset, DatasetParameterSet):
                self.parameters = DatasetParameter.objects.filter(\
                   parameterset=self.parameterset).order_by('name__full_name')

                self.blank_param = DatasetParameter

            elif isinstance(self.parameterset, ExperimentParameterSet):
                self.parameters = ExperimentParameter.objects.filter(\
                   parameterset=self.parameterset).order_by('name__full_name')

                self.blank_param = ExperimentParameter

            else:
                raise TypeError("Invalid parameterset object given.")

        elif parentObject and schema:

            self.namespace = schema

            if isinstance(parentObject, Dataset_File):
                self.parameterset = DatafileParameterSet(
                    schema=self.get_schema(), dataset_file=parentObject)

                self.parameterset.save()

                self.parameters = DatafileParameter.objects.filter(
                    parameterset=self.parameterset)

                self.blank_param = DatafileParameter

            elif isinstance(parentObject, Dataset):
                self.parameterset = DatasetParameterSet(
                    schema=self.get_schema(), dataset=parentObject)

                self.parameterset.save()

                self.parameters = DatasetParameter.objects.filter(
                    parameterset=self.parameterset)

                self.blank_param = DatasetParameter

            elif isinstance(parentObject, Experiment):
                self.parameterset = ExperimentParameterSet(
                    schema=self.get_schema(), experiment=parentObject)

                self.parameterset.save()

                self.parameters = ExperimentParameter.objects.filter(
                    parameterset=self.parameterset)

                self.blank_param = ExperimentParameter

            else:
                raise TypeError("Invalid parent object." +
                    "Must be an experiment/dataset/datafile not " + str(type(parentObject)))

        else:
#.........这里部分代码省略.........

#.........这里部分代码省略.........
            form_state['selectedLicenseId'] = -1

        # Set a default author (current user) if no previously saved data
        # By default, the form sends a list of authors of one element
        # with blank fields
        if len(form_state['authors']) == 1 and \
                not form_state['authors'][0]['name']:
            form_state['authors'] = [
                {'name': ' '.join([request.user.first_name,
                                   request.user.last_name]),
                 'institution': getattr(settings, 'DEFAULT_INSTITUTION', ''),
                 'email': request.user.email}]

    elif form_state['action'] == 'submit':
        # any final form validation should occur here
        # and specific error messages can be returned
        # to the browser before the publication's draft
        # status is removed.

        if 'acknowledge' not in form_state or not form_state['acknowledge']:
            return validation_error('You must confirm that you are '
                                    'authorised to submit this publication')

        set_publication_authors(form_state['authors'], publication)

        institutions = '; '.join(
            set([author['institution'] for author in form_state['authors']]))
        publication.institution_name = institutions

        # Attach the publication details schema
        pub_details_schema = Schema.objects.get(
            namespace=getattr(settings, 'PUBLICATION_DETAILS_SCHEMA',
                              default_settings.PUBLICATION_DETAILS_SCHEMA))
        pub_details_parameter_set = ExperimentParameterSet(
            schema=pub_details_schema,
            experiment=publication)
        pub_details_parameter_set.save()

        # Add the acknowledgements
        acknowledgements_parameter_name = ParameterName.objects.get(
            schema=pub_details_schema,
            name='acknowledgements')
        ExperimentParameter(name=acknowledgements_parameter_name,
                            parameterset=pub_details_parameter_set,
                            string_value=form_state['acknowledgements']).save()

        # Set the release date
        set_embargo_release_date(
            publication,
            dateutil.parser.parse(
                form_state[
                    'embargo']))

        # Set the license
        try:
            publication.license = License.objects.get(
                pk=form_state['selectedLicenseId'],
                is_active=True,
                allows_distribution=True)
        except License.DoesNotExist:
            publication.license = License.get_none_option_license()

        publication.save()

        # Send emails about publication in draft
        subject, message_content = email_pub_requires_authorisation(