Python local_elements.DescriptorMemoryElement类代码示例

    def test_get_hash(self):
        fit_descriptors = []
        for i in range(5):
            d = DescriptorMemoryElement(six.b('test'), i)
            d.set_vector([-2. + i, -2. + i])
            fit_descriptors.append(d)

        # The following "rotation" matrix should cause any 2-feature descriptor
        # to the right of the line ``y = -x`` to be True, and to the left as
        # False. If on the line, should be True.
        itq = ItqFunctor(bit_length=1, random_seed=0)
        itq.mean_vec = numpy.array([0., 0.])
        itq.rotation = numpy.array([[1. / sqrt(2)],
                                    [1. / sqrt(2)]])

        numpy.testing.assert_array_equal(
            itq.get_hash(numpy.array([1, 1])), [True])
        numpy.testing.assert_array_equal(
            itq.get_hash(numpy.array([-1, -1])), [False])

        numpy.testing.assert_array_equal(
            itq.get_hash(numpy.array([-1, 1])), [True])
        numpy.testing.assert_array_equal(
            itq.get_hash(numpy.array([-1.001, 1])), [False])
        numpy.testing.assert_array_equal(
            itq.get_hash(numpy.array([-1, 1.001])), [True])

        numpy.testing.assert_array_equal(
            itq.get_hash(numpy.array([1, -1])), [True])
        numpy.testing.assert_array_equal(
            itq.get_hash(numpy.array([1, -1.001])), [False])
        numpy.testing.assert_array_equal(
            itq.get_hash(numpy.array([1.001, -1])), [True])

    def test_fit_short_descriptors_for_bit_length(self):
        # Should error when input descriptors have fewer dimensions than set bit
        # length for output hash codes (limitation of PCA method currently
        # used).
        fit_descriptors = []
        for i in range(3):
            d = DescriptorMemoryElement(six.b('test'), i)
            d.set_vector([-1+i, -1+i])
            fit_descriptors.append(d)

        itq = ItqFunctor(bit_length=8)
        self.assertRaisesRegexp(
            ValueError,
            "Input descriptors have fewer features than requested bit encoding",
            itq.fit, fit_descriptors
        )
        self.assertIsNone(itq.mean_vec)
        self.assertIsNone(itq.rotation)

        # Should behave the same when input is an iterable
        self.assertRaisesRegexp(
            ValueError,
            "Input descriptors have fewer features than requested bit encoding",
            itq.fit, iter(fit_descriptors)
        )
        self.assertIsNone(itq.mean_vec)
        self.assertIsNone(itq.rotation)

        def test_build_index(self):
            # Empty memory data elements for storage
            empty_data = 'base64://'
            f = FlannNearestNeighborsIndex(empty_data, empty_data, empty_data)
            # Internal elements should initialize have zero-length byte values
            self.assertEqual(len(f._index_elem.get_bytes()), 0)
            self.assertEqual(len(f._index_param_elem.get_bytes()), 0)
            self.assertEqual(len(f._descr_cache_elem.get_bytes()), 0)

            # Make unit vectors, one for each feature
            dim = 8
            test_descriptors = []
            for i in range(dim):
                v = numpy.zeros(dim, float)
                v[i] = 1.
                d = DescriptorMemoryElement('unit', i)
                d.set_vector(v)
                test_descriptors.append(d)

            f.build_index(test_descriptors)

            # Internal elements should not have non-zero byte values.
            self.assertGreater(len(f._index_elem.get_bytes()), 0)
            self.assertGreater(len(f._index_param_elem.get_bytes()), 0)
            self.assertGreater(len(f._descr_cache_elem.get_bytes()), 0)

    def test_fit_with_cache(self):
        fit_descriptors = []
        for i in range(5):
            d = DescriptorMemoryElement(six.b('test'), i)
            d.set_vector([-2. + i, -2. + i])
            fit_descriptors.append(d)

        itq = ItqFunctor(DataMemoryElement(), DataMemoryElement(),
                         bit_length=1, random_seed=0)
        itq.fit(fit_descriptors)

        # TODO: Explanation as to why this is the expected result.
        numpy.testing.assert_array_almost_equal(itq.mean_vec, [0, 0])
        numpy.testing.assert_array_almost_equal(itq.rotation, [[1 / sqrt(2)],
                                                               [1 / sqrt(2)]])
        self.assertIsNotNone(itq.mean_vec_cache_elem)
        numpy.testing.assert_array_almost_equal(
            numpy.load(BytesIO(itq.mean_vec_cache_elem.get_bytes())),
            [0, 0]
        )

        self.assertIsNotNone(itq.rotation_cache_elem)
        numpy.testing.assert_array_almost_equal(
            numpy.load(BytesIO(itq.rotation_cache_elem.get_bytes())),
            [[1 / sqrt(2)],
             [1 / sqrt(2)]]
        )

    def test_normal_conditions(self, mock_dsi_count):
        index = DummySI()
        mock_dsi_count.return_value = 1

        q = DescriptorMemoryElement('q', 0)
        q.set_vector(numpy.random.rand(4))
        index.nn(q)

    def _random_euclidean(self, hash_ftor, hash_idx,
                          ftor_train_hook=lambda d: None):
        # :param hash_ftor: Hash function class for generating hash codes for
        #   descriptors.
        # :param hash_idx: Hash index instance to use in local LSH algo
        #   instance.
        # :param ftor_train_hook: Function for training functor if necessary.

        # make random descriptors
        i = 1000
        dim = 256
        td = []
        np.random.seed(self.RANDOM_SEED)
        for j in range(i):
            d = DescriptorMemoryElement('random', j)
            d.set_vector(np.random.rand(dim))
            td.append(d)

        ftor_train_hook(td)

        di = MemoryDescriptorIndex()
        kvstore = MemoryKeyValueStore()
        index = LSHNearestNeighborIndex(hash_ftor, di, kvstore,
                                        hash_index=hash_idx,
                                        distance_method='euclidean')
        index.build_index(td)

        # test query from build set -- should return same descriptor when k=1
        q = td[255]
        r, dists = index.nn(q, 1)
        self.assertEqual(r[0], q)

        # test query very near a build vector
        td_q = td[0]
        q = DescriptorMemoryElement('query', i)
        v = td_q.vector().copy()
        v_min = max(v.min(), 0.1)
        v[0] += v_min
        v[dim-1] -= v_min
        q.set_vector(v)
        r, dists = index.nn(q, 1)
        self.assertFalse(np.array_equal(q.vector(), td_q.vector()))
        self.assertEqual(r[0], td_q)

        # random query
        q = DescriptorMemoryElement('query', i+1)
        q.set_vector(np.random.rand(dim))

        # for any query of size k, results should at least be in distance order
        r, dists = index.nn(q, 10)
        for j in range(1, len(dists)):
            self.assertGreater(dists[j], dists[j-1])
        r, dists = index.nn(q, i)
        for j in range(1, len(dists)):
            self.assertGreater(dists[j], dists[j-1])

    def test_none_set(self):
        d = DescriptorMemoryElement('test', 0)
        self.assertFalse(d.has_vector())

        d.set_vector(numpy.ones(16))
        self.assertTrue(d.has_vector())
        numpy.testing.assert_equal(d.vector(), numpy.ones(16))

        d.set_vector(None)
        self.assertFalse(d.has_vector())
        self.assertIs(d.vector(), None)

 def test_build_index_one(self):
     d = DescriptorMemoryElement('test', 0)
     d.set_vector(numpy.zeros(8, float))
     index = self._make_inst('euclidean')
     index.build_index([d])
     self.assertListEqual(
         index._descr_cache,
         [d]
     )
     self.assertIsNotNone(index._flann)
     self.assertIsInstance(index._flann_build_params, dict)

    def test_none_set(self):
        d = DescriptorMemoryElement('test', 0)
        ntools.assert_false(d.has_vector())

        d.set_vector(numpy.ones(16))
        ntools.assert_true(d.has_vector())
        numpy.testing.assert_equal(d.vector(), numpy.ones(16))

        d.set_vector(None)
        ntools.assert_false(d.has_vector())
        ntools.assert_is(d.vector(), None)

        def test_build_index_read_only(self):
            v = np.zeros(5, float)
            v[0] = 1.
            d = DescriptorMemoryElement('unit', 0)
            d.set_vector(v)
            test_descriptors = [d]

            index = self._make_inst(read_only=True)
            self.assertRaises(
                ReadOnlyError,
                index.build_index, test_descriptors
            )

    def test_configuration(self):
        default_config = DescriptorMemoryElement.get_default_config()
        ntools.assert_equal(default_config, {})

        inst1 = DescriptorMemoryElement.from_config(default_config, 'test', 'a')
        ntools.assert_equal(default_config, inst1.get_config())
        ntools.assert_equal(inst1.type(), 'test')
        ntools.assert_equal(inst1.uuid(), 'a')

        # vector-based equality
        inst2 = DescriptorMemoryElement.from_config(inst1.get_config(),
                                                    'test', 'a')
        ntools.assert_equal(inst1, inst2)

    def test_classify(self):
        c = IndexLabelClassifier(self.FILEPATH_TEST_LABELS)
        m_expected = {
            six.b('label_1'): 1,
            six.b('label_2'): 2,
            six.b('negative'): 3,
            six.b('label_3'): 4,
            six.b('Kitware'): 5,
            six.b('label_4'): 6,
        }

        d = DescriptorMemoryElement('test', 0)
        d.set_vector([1, 2, 3, 4, 5, 6])

        m = c._classify(d)
        self.assertEqual(m, m_expected)

    def _random_euclidean(self, hash_ftor, hash_idx, ftor_train_hook=lambda d: None):
        # make random descriptors
        i = 1000
        dim = 256
        td = []
        numpy.random.seed(self.RANDOM_SEED)
        for j in xrange(i):
            d = DescriptorMemoryElement("random", j)
            d.set_vector(numpy.random.rand(dim))
            td.append(d)

        ftor_train_hook(td)

        di = MemoryDescriptorIndex()
        index = LSHNearestNeighborIndex(hash_ftor, di, hash_idx, distance_method="euclidean")
        index.build_index(td)

        # test query from build set -- should return same descriptor when k=1
        q = td[255]
        r, dists = index.nn(q, 1)
        ntools.assert_equal(r[0], q)

        # test query very near a build vector
        td_q = td[0]
        q = DescriptorMemoryElement("query", i)
        v = td_q.vector().copy()
        v_min = max(v.min(), 0.1)
        v[0] += v_min
        v[dim - 1] -= v_min
        q.set_vector(v)
        r, dists = index.nn(q, 1)
        ntools.assert_false(numpy.array_equal(q.vector(), td_q.vector()))
        ntools.assert_equal(r[0], td_q)

        # random query
        q = DescriptorMemoryElement("query", i + 1)
        q.set_vector(numpy.random.rand(dim))

        # for any query of size k, results should at least be in distance order
        r, dists = index.nn(q, 10)
        for j in xrange(1, len(dists)):
            ntools.assert_greater(dists[j], dists[j - 1])
        r, dists = index.nn(q, i)
        for j in xrange(1, len(dists)):
            ntools.assert_greater(dists[j], dists[j - 1])

        DescriptorMemoryElement.MEMORY_CACHE = {}

    def test_clustering_equal_descriptors(self):
        # Test that clusters of descriptor of size  n-features are correctly
        # clustered together.
        print("Creating dummy descriptors")
        n_features = 8
        n_descriptors = 20

        index = MemoryDescriptorIndex()
        c = 0
        for i in range(n_features):
            v = numpy.ndarray((8,))
            v[...] = 0
            v[i] = 1
            for j in range(n_descriptors):
                d = DescriptorMemoryElement('test', c)
                d.set_vector(v)
                index.add_descriptor(d)
                c += 1

        print("Creating test MBKM")
        mbkm = MiniBatchKMeans(n_features, batch_size=12, verbose=True,
                               compute_labels=False, random_state=0)

        # Initial fit with half of index
        d_classes = mb_kmeans_build_apply(index, mbkm, n_descriptors)

        # There should be 20 descriptors per class
        for c in d_classes:
            self.assertEqual(
                len(d_classes[c]),
                n_descriptors,
                "Cluster %s did not have expected number of descriptors "
                "(%d != %d)"
                % (c, n_descriptors, len(d_classes[c]))
            )

            # Each descriptor in each cluster should be equal to the other
            # descriptors in that cluster
            uuids = list(d_classes[c])
            v = index[uuids[0]].vector()
            for uuid in uuids[1:]:
                v2 = index[uuid].vector()
                numpy.testing.assert_array_equal(v, v2,
                                                 "vector in cluster %d did not "
                                                 "match other vectors "
                                                 "(%s != %s)"
                                                 % (c, v, v2))

    def test_classify_invalid_descriptor_dimensions(self):
        c = IndexLabelClassifier(self.FILEPATH_TEST_LABELS)
        d = DescriptorMemoryElement('test', 0)

        # One less
        d.set_vector([1, 2, 3, 4, 5])
        self.assertRaises(
            RuntimeError,
            c._classify, d
        )

        # One more
        d.set_vector([1, 2, 3, 4, 5, 6, 7])
        self.assertRaises(
            RuntimeError,
            c._classify, d
        )