本文整理汇总了Python中skbio.SequenceCollection.from_fasta_records方法的典型用法代码示例。如果您正苦于以下问题：Python SequenceCollection.from_fasta_records方法的具体用法？Python SequenceCollection.from_fasta_records怎么用？Python SequenceCollection.from_fasta_records使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类skbio.SequenceCollection的用法示例。
在下文中一共展示了SequenceCollection.from_fasta_records方法的2个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: test_degap
# 需要导入模块: from skbio import SequenceCollection [as 别名]
# 或者: from skbio.SequenceCollection import from_fasta_records [as 别名]
def test_degap(self):
"""degap functions as expected
"""
expected = [(id_, seq.replace(".", "").replace("-", "")) for id_, seq in self.seqs1_t]
expected = SequenceCollection.from_fasta_records(expected, DNASequence)
actual = self.a1.degap()
self.assertEqual(actual, expected)
expected = [(id_, seq.replace(".", "").replace("-", "")) for id_, seq in self.seqs2_t]
expected = SequenceCollection.from_fasta_records(expected, RNASequence)
actual = self.a2.degap()
self.assertEqual(actual, expected)示例2: test_from_fasta_records
# 需要导入模块: from skbio import SequenceCollection [as 别名]
# 或者: from skbio.SequenceCollection import from_fasta_records [as 别名]
def test_from_fasta_records(self):
"""Initialization from list of tuples functions as expected
"""
SequenceCollection.from_fasta_records(self.seqs1_t, DNASequence)
SequenceCollection.from_fasta_records(self.seqs2_t, RNASequence)
SequenceCollection.from_fasta_records(self.seqs3_t, NucleotideSequence)