本文整理汇总了Python中scilifelab.db.statusdb.SampleRunMetricsConnection.get_sample_ids方法的典型用法代码示例。如果您正苦于以下问题：Python SampleRunMetricsConnection.get_sample_ids方法的具体用法？Python SampleRunMetricsConnection.get_sample_ids怎么用？Python SampleRunMetricsConnection.get_sample_ids使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类scilifelab.db.statusdb.SampleRunMetricsConnection的用法示例。
在下文中一共展示了SampleRunMetricsConnection.get_sample_ids方法的3个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: test_3_get_sample_ids
# 需要导入模块: from scilifelab.db.statusdb import SampleRunMetricsConnection [as 别名]
# 或者: from scilifelab.db.statusdb.SampleRunMetricsConnection import get_sample_ids [as 别名]
def test_3_get_sample_ids(self):
"""Test getting sample ids given flowcell and sample_prj"""
sample_con = SampleRunMetricsConnection(username=self.user, password=self.pw, url=self.url)
sample_ids = sample_con.get_sample_ids(fc_id=self.examples["flowcell"])
print "Number of samples before subsetting: " + str(len(sample_ids))
sample_ids = sample_con.get_sample_ids(fc_id=self.examples["flowcell"], sample_prj=self.examples["project"])
print "Number of samples after subsetting: " + str(len(sample_ids))示例2: test_get_sample_ids
# 需要导入模块: from scilifelab.db.statusdb import SampleRunMetricsConnection [as 别名]
# 或者: from scilifelab.db.statusdb.SampleRunMetricsConnection import get_sample_ids [as 别名]
def test_get_sample_ids(self):
"""Test getting sample ids given flowcell and sample_prj"""
sample_con = SampleRunMetricsConnection(dbname="samples-test", username=self.user, password=self.pw, url=self.url)
sample_ids = sample_con.get_sample_ids(fc_id=self.examples["flowcell"])
LOG.info("Number of samples before subsetting: " + str(len(sample_ids)))
self.assertEqual(len(sample_ids), 5)
sample_ids = sample_con.get_sample_ids(fc_id=self.examples["flowcell"], sample_prj=self.examples["project"])
LOG.info( "Number of samples after subsetting: " + str(len(sample_ids)))
self.assertEqual(len(sample_ids), 2)示例3: test_get_project_sample_ids
# 需要导入模块: from scilifelab.db.statusdb import SampleRunMetricsConnection [as 别名]
# 或者: from scilifelab.db.statusdb.SampleRunMetricsConnection import get_sample_ids [as 别名]
def test_get_project_sample_ids(self):
"""Test getting project sample ids"""
sample_con = SampleRunMetricsConnection(
dbname="samples-test", username=self.user, password=self.pw, url=self.url
)
sample_ids = sample_con.get_sample_ids(sample_prj=self.examples["project"])
sample_names = [sample_con.db.get(x)["name"] for x in sample_ids]
self.assertEqual(
set(sample_names),
set(["1_120924_AC003CCCXX_TGACCA", "2_120924_AC003CCCXX_ACAGTG", "1_121015_BB002BBBXX_TGACCA"]),
)