本文整理汇总了Python中savu.test.test_utils.set_options函数的典型用法代码示例。如果您正苦于以下问题：Python set_options函数的具体用法？Python set_options怎么用？Python set_options使用的例子？那么恭喜您, 这里精选的函数代码示例或许可以为您提供帮助。
在下文中一共展示了set_options函数的15个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: test_reload
def test_reload(self):
data_file = tu.get_test_data_path('24737.nxs')
process_file = tu.get_test_process_path('savu_nexus_loader_test1.nxs')
exp = run_protected_plugin_runner(
tu.set_options(data_file, process_file=process_file))
data_file = exp.meta_data.get('nxs_filename')
process_file = tu.get_test_process_path('savu_nexus_loader_test2.nxs')
run_protected_plugin_runner(tu.set_options(data_file,
process_file=process_file))示例2: test_i08_REGRESSION
def test_i08_REGRESSION(self):
data_file = tu.get_test_big_data_path('pymca_live_processing_test/i08-10471.nxs')
process_file = tu.get_test_process_path('i08_pymca_process.nxs')
outdir = tempfile.mkdtemp(prefix="pymca_i08_test")
if os.path.exists(outdir):
shutil.rmtree(outdir)
os.makedirs(outdir, stat.S_IRWXO | stat.S_IRWXU)
options = tu.set_options(data_file, process_file=process_file, out_path=outdir)
run_protected_plugin_runner(options)
change_permissions_recursive(options['out_path'],
stat.S_IRWXO | stat.S_IRWXU | stat.S_IRWXG)
output_filename = ("%(out_path)s"+os.sep+"%(out_folder)s_processed.nxs") % options
f_test = h5.File(output_filename, 'r') # the result of this test
test_path = tu.get_test_big_data_path('pymca_live_processing_test/savu_test_result/test_processed.nxs')
f_known = h5.File(test_path, 'r') # a known good result from the same data
# first we just do a direct comparison of the data. This should be equal exactly.
data = '/entry/final_result_fluo/data'
elements = 'entry/final_result_fluo/PeakElements'
self.assertTrue((f_test[data][...] == f_known[data][...]).any())
self.assertListEqual(list(f_test[elements][...]),
list(f_known[elements][...]))示例3: test_i18_stxm
def test_i18_stxm(self):
# data_file = '/dls/i18/data/2016/sp12601-1/processing/Savu_Test_Data/70214_Cat2_RT_1.nxs'
data_file = tu.get_test_data_path('i18_test_data.nxs')
process_file = tu.get_test_process_path('basic_stxm_process_i18.nxs')
# process_file = tu.get_process_list_path('stxm_tomo_i18.nxs')
run_protected_plugin_runner(tu.set_options(data_file,
process_file=process_file))示例4: test_diffraction_correction
def test_diffraction_correction(self):
data_file = tu.get_test_data_path('i18_test_data.nxs')
# data_file = '/dls/i18/data/2016/sp13939-1/Experiment_1/nexus/75996_alphanitrateRT_1.nxs'
process_file = tu.get_test_process_path('diffraction_absorption_correction_test.nxs')
run_protected_plugin_runner(tu.set_options(data_file,
process_file=process_file))示例5: test_simple_fit_runs
def test_simple_fit_runs(self):
# data_file = '/dls/i13-1/data/2016/mt14190-1/raw/91318.nxs'#
data_file = tu.get_test_data_path('i18_test_data.nxs')
process_file = tu.get_test_process_path('pymca_test.nxs')
# process_file = '/dls/i13-1/data/2016/mt14190-1/processing/savu/process_lists/pymca_process.nxs'
options = tu.set_options(data_file, process_file=process_file)
self.datapath = options['out_path']
run_protected_plugin_runner(options)示例6: test_3D_data
def test_3D_data(self):
A = 3
B = 4
C = 5
X = 10
Y = 13
expected_output_shape = (A, B, C, X, Y)
expected_top_corners = np.arange(A*B*C, dtype=np.float32).reshape((A, B, C))
self.create_N_tiffs(A*B*C, frame_size=(X, Y))
# create a data file with the axis information
self.data_file['entry/A'] = np.arange(A)
self.data_file['entry/B'] = np.arange(B)
self.data_file['entry/C'] = np.arange(C)
self.data_file.close()
# edit and save the yaml
self.yaml['xrd']['data']['shape'] = '$(len(A_vals), len(B_vals), len(C_vals))'
self.yaml['xrd']['params'].update({'idx_A': 0,
'idx_B': 1,
'idx_C': 2,
'idx_detx': 3,
'idx_dety': 4,
'A_vals': "$dfile['entry/A'].value",
'B_vals': "$dfile['entry/B'].value",
'C_vals': "$dfile['entry/C'].value",
'dims': "$range(0, 4)"})
self.yaml['xrd']['axis_labels'] = {0: {'dim': '$idx_A', 'name': 'A', 'value': '$A_vals', 'units': 'pixels'},
1: {'dim': '$idx_B', 'name': 'B', 'value': '$B_vals', 'units': 'pixels'},
2: {'dim': '$idx_C', 'name': 'C', 'value': '$C_vals', 'units': 'pixels'},
3: self.detX_axis_label,
4: self.detY_axis_label}
self.save_yaml_and_change_process_list()
run_protected_plugin_runner(tu.set_options(self.data_file_path,
process_file=self.process_list_path,
out_path=self.test_folder))
result = h5.File(os.path.join(self.test_folder, 'test_processed.nxs'), 'r')['entry/final_result_xrd/data']
np.testing.assert_array_equal(result.shape, expected_output_shape,
err_msg='The output shape is not as expected.')
result_corners = result[..., -1, -1]
np.testing.assert_equal(result_corners.dtype, expected_top_corners.dtype,
err_msg='The array does not output the correct type.')
np.testing.assert_array_equal(result_corners, expected_top_corners,
err_msg="The output values are not as expected")示例7: test_nx_stxm
def test_nx_stxm(self):
data_file = tu.get_test_data_path('mm.nxs')
process_file = tu.get_test_process_path('basic_stxm_process.nxs')
run_protected_plugin_runner(tu.set_options(data_file,
process_file=process_file))示例8: test_distortion_correction
def test_distortion_correction(self):
data_file = tu.get_test_data_path('24737.nxs')
process_file = \
tu.get_test_process_path('distortion_correction_test.nxs')
run_protected_plugin_runner(tu.set_options(data_file,
process_file=process_file))示例9: test_process_preview
def test_process_preview(self):
data_file = tu.get_test_data_path('24737.nxs')
process_file = \
tu.get_test_process_path('tomo_pipeline_preview_test.nxs')
run_protected_plugin_runner(tu.set_options(data_file,
process_file=process_file))示例10: test_multi_params_tomo
def test_multi_params_tomo(self):
data_file = tu.get_test_data_path('24737.nxs')
process_file = tu.get_test_process_path(
'basic_tomo_process_preview_params_test.nxs')
run_protected_plugin_runner(tu.set_options(data_file,
process_file=process_file))示例11: test_process
def test_process(self):
data_file = tu.get_test_data_path('fluo_single_sino.nxs')
process_file = tu.get_test_process_path('simple_fit_test_XRF_tomo.nxs')
run_protected_plugin_runner(tu.set_options(data_file,
process_file=process_file))示例12: test_cgls_recon
def test_cgls_recon(self):
data_file = tu.get_test_data_path('24737.nxs')
process_file = tu.get_test_process_path('ccpi_cgls_recon_test.nxs')
run_protected_plugin_runner(tu.set_options(data_file,
process_file=process_file))示例13: test_binary_quantisation_filter
def test_binary_quantisation_filter(self):
data_file = tu.get_test_data_path('24737.nxs')
process_file = tu.get_test_process_path('threshold_filter_test.nxs')
run_protected_plugin_runner(tu.set_options(data_file,
process_file=process_file))示例14: test_stage_motion
def test_stage_motion(self):
data_file = tu.get_test_data_path('kinematics_data.nxs')
process_file = tu.get_test_process_path('kinematic_parser_test.nxs')
run_protected_plugin_runner(tu.set_options(data_file,
process_file=process_file))示例15: test_subpixel_shift
def test_subpixel_shift(self):
data_file = tu.get_test_data_path('24737.nxs')
process_file = \
tu.get_test_process_path('subpixel_shift.nxs')
run_protected_plugin_runner(tu.set_options(data_file,
process_file=process_file))