Python entk.Task类代码示例

def test_wfp_check_processor():

    p = Pipeline()
    s = Stage()
    t = Task()
    t.executable = ['/bin/date']
    s.add_tasks(t)
    p.add_stages(s)

    amgr = Amgr(hostname=hostname, port=port)
    amgr._setup_mqs()

    wfp = WFprocessor(sid=amgr._sid,
                      workflow=[p],
                      pending_queue=amgr._pending_queue,
                      completed_queue=amgr._completed_queue,
                      mq_hostname=amgr._mq_hostname,
                      port=amgr._port,
                      resubmit_failed=False)

    wfp.start_processor()
    assert wfp.check_processor()

    wfp.terminate_processor()
    assert not wfp.check_processor()

def test_pipeline_decrement_stage():

    p = Pipeline()
    s1 = Stage()
    t = Task()
    t.executable = ['/bin/date']
    s1.tasks = t
    s2 = Stage()
    t = Task()
    t.executable = ['/bin/date']
    s2.tasks = t
    p.add_stages([s1, s2])

    p._increment_stage()
    p._increment_stage()
    assert p._stage_count == 2
    assert p._cur_stage == 2
    assert p._completed_flag.is_set() == True

    p._decrement_stage()
    assert p._stage_count == 2
    assert p._cur_stage == 1
    assert p._completed_flag.is_set() == False

    p._decrement_stage()
    assert p._stage_count == 2
    assert p._cur_stage == 0
    assert p._completed_flag.is_set() == False

def test_issue_239():

    t = Task()
    t.cpu_reqs = {'processes': 1}
    assert t.cpu_reqs == {  'processes': 1,
                            'thread_type': None,
                            'threads_per_process': 1,
                            'process_type': None}

    t.cpu_reqs = {'threads_per_process': 1}
    assert t.cpu_reqs == {  'processes': 1,
                            'thread_type': None,
                            'threads_per_process': 1,
                            'process_type': None}

    t.gpu_reqs = {'processes': 1}
    assert t.gpu_reqs == {  'processes': 1,
                            'thread_type': None,
                            'threads_per_process': 1,
                            'process_type': None}

    t.gpu_reqs = {'threads_per_process': 1}
    assert t.gpu_reqs == {  'processes': 1,
                            'thread_type': None,
                            'threads_per_process': 1,
                            'process_type': None}

def generate_pipeline(name, stages):

    # Create a Pipeline object
    p = Pipeline()
    p.name = name


    for s_cnt in range(stages):

        # Create a Stage object
        s = Stage()
        s.name = 'Stage %s'%s_cnt

        for t_cnt in range(5):

            # Create a Task object
            t = Task()
            t.name = 'my-task'        # Assign a name to the task (optional)
            t.executable = '/bin/echo'   # Assign executable to the task
            # Assign arguments for the task executable
            t.arguments = ['I am task %s in %s in %s'%(t_cnt, s_cnt, name)]

            # Add the Task to the Stage
            s.add_tasks(t)

        # Add Stage to the Pipeline
        p.add_stages(s)

    return p

def test_wfp_initialization(s, i, b, l):

    p = Pipeline()
    st = Stage()
    t = Task()
    t.executable = ['/bin/date']
    st.add_tasks(t)
    p.add_stages(st)

    wfp = WFprocessor(sid='rp.session.local.0000',
                      workflow=set([p]),
                      pending_queue=['pending'],
                      completed_queue=['completed'],
                      mq_hostname=hostname,
                      port=port,
                      resubmit_failed=True)

    assert len(wfp._uid.split('.')) == 2
    assert 'wfprocessor' == wfp._uid.split('.')[0]
    assert wfp._pending_queue == ['pending']
    assert wfp._completed_queue == ['completed']
    assert wfp._mq_hostname == hostname
    assert wfp._port == port
    assert wfp._wfp_process == None
    assert wfp._workflow == set([p])

    if not isinstance(s, unicode):
        wfp = WFprocessor(sid=s,
                          workflow=set([p]),
                          pending_queue=l,
                          completed_queue=l,
                          mq_hostname=s,
                          port=i,
                          resubmit_failed=b)

    def create_single_task():

        t1 = Task()
        t1.name = 'simulation'
        t1.executable = ['/bin/date']
        t1.copy_input_data = []
        t1.copy_output_data = []

        return t1

def test_wfp_workflow_incomplete():

    p = Pipeline()
    s = Stage()
    t = Task()
    t.executable = ['/bin/date']
    s.add_tasks(t)
    p.add_stages(s)

    amgr = Amgr(hostname=hostname, port=port)
    amgr._setup_mqs()

    wfp = WFprocessor(sid=amgr._sid,
                      workflow=[p],
                      pending_queue=amgr._pending_queue,
                      completed_queue=amgr._completed_queue,
                      mq_hostname=amgr._mq_hostname,
                      port=amgr._port,
                      resubmit_failed=False)

    wfp._initialize_workflow()

    assert wfp.workflow_incomplete()

    amgr.workflow = [p]
    profiler = ru.Profiler(name='radical.entk.temp')

    p.stages[0].state == states.SCHEDULING
    p.state == states.SCHEDULED
    for t in p.stages[0].tasks:
        t.state = states.COMPLETED

    import json
    import pika

    task_as_dict = json.dumps(t.to_dict())
    mq_connection = pika.BlockingConnection(pika.ConnectionParameters(host=amgr._mq_hostname, port=amgr._port))
    mq_channel = mq_connection.channel()
    mq_channel.basic_publish(exchange='',
                             routing_key='%s-completedq-1' % amgr._sid,
                             body=task_as_dict)

    amgr._terminate_sync = Event()
    sync_thread = Thread(target=amgr._synchronizer, name='synchronizer-thread')
    sync_thread.start()

    proc = Process(target=func_for_dequeue_test, name='temp-proc', args=(wfp,))
    proc.start()
    proc.join()

    amgr._terminate_sync.set()
    sync_thread.join()

    assert not wfp.workflow_incomplete()

def test_stage_check_complete():

    s = Stage()
    t1 = Task()
    t1.executable = ['/bin/date']
    t2 = Task()
    t2.executable = ['/bin/date']
    s.add_tasks([t1, t2])

    assert s._check_stage_complete() == False
    s._set_tasks_state(states.DONE)
    assert s._check_stage_complete() == True

def test_stage_task_assignment():
    """
    ***Purpose***: Test if necessary attributes are automatically updates upon task assignment
    """

    s = Stage()
    t = Task()
    t.executable = ['/bin/date']
    s.tasks = t

    assert type(s.tasks) == set
    assert s._task_count == 1
    assert t in s.tasks

def test_pipeline_stage_assignment():

    p = Pipeline()
    s = Stage()
    t = Task()
    t.executable = ['/bin/date']
    s.tasks = t
    p.stages = s

    assert type(p.stages) == list
    assert p._stage_count == 1
    assert p._cur_stage == 1
    assert p.stages[0] == s

def test_amgr_synchronizer():

    logger = ru.Logger('radical.entk.temp_logger')
    profiler = ru.Profiler(name='radical.entk.temp')
    amgr = Amgr(hostname=hostname, port=port)

    amgr._setup_mqs()

    p = Pipeline()
    s = Stage()

    # Create and add 100 tasks to the stage
    for cnt in range(100):

        t = Task()
        t.executable = ['some-executable-%s' % cnt]

        s.add_tasks(t)

    p.add_stages(s)
    p._assign_uid(amgr._sid)
    p._validate()

    amgr.workflow = [p]

    for t in p.stages[0].tasks:
        assert t.state == states.INITIAL

    assert p.stages[0].state == states.INITIAL
    assert p.state == states.INITIAL

    # Start the synchronizer method in a thread
    amgr._terminate_sync = Event()
    sync_thread = Thread(target=amgr._synchronizer, name='synchronizer-thread')
    sync_thread.start()

    # Start the synchronizer method in a thread
    proc = Process(target=func_for_synchronizer_test, name='temp-proc',
                   args=(amgr._sid, p, logger, profiler))

    proc.start()
    proc.join()

    for t in p.stages[0].tasks:
        assert t.state == states.SCHEDULING

    assert p.stages[0].state == states.SCHEDULING
    assert p.state == states.SCHEDULING

    amgr._terminate_sync.set()
    sync_thread.join()

def test_stage_task_addition():

    s = Stage()
    t1 = Task()
    t1.executable = ['/bin/date']
    t2 = Task()
    t2.executable = ['/bin/date']
    s.add_tasks(set([t1, t2]))

    assert type(s.tasks) == set
    assert s._task_count == 2
    assert t1 in s.tasks
    assert t2 in s.tasks

    s = Stage()
    t1 = Task()
    t1.executable = ['/bin/date']
    t2 = Task()
    t2.executable = ['/bin/date']
    s.add_tasks([t1, t2])

    assert type(s.tasks) == set
    assert s._task_count == 2
    assert t1 in s.tasks
    assert t2 in s.tasks

def generate_pipeline():

    def func_condition():

        global CUR_NEW_STAGE, MAX_NEW_STAGE

        if CUR_NEW_STAGE <= MAX_NEW_STAGE:
            return True

        return False

    def func_on_true():

        global CUR_NEW_STAGE
        CUR_NEW_STAGE += 1

        shuffle(p.stages[CUR_NEW_STAGE:])

    def func_on_false():
        print 'Done'

    # Create a Pipeline object
    p = Pipeline()

    for s in range(MAX_NEW_STAGE+1):

        # Create a Stage object
        s1 = Stage()

        for i in range(CUR_TASKS):

            t1 = Task()
            t1.executable = '/bin/sleep'
            t1.arguments = [ '30']

            # Add the Task to the Stage
            s1.add_tasks(t1)

        # Add post-exec to the Stage
        s1.post_exec = {
                        condition': func_condition,
                        on_true': func_on_true,
                        on_false': func_on_false
                        }

        # Add Stage to the Pipeline
        p.add_stages(s1)

    return p

def test_stage_set_tasks_state():

    s = Stage()
    t1 = Task()
    t1.executable = ['/bin/date']
    t2 = Task()
    t2.executable = ['/bin/date']
    s.add_tasks([t1, t2])

    with pytest.raises(ValueError):
        s._set_tasks_state(2)

    s._set_tasks_state(states.DONE)
    assert t1.state == states.DONE
    assert t2.state == states.DONE

    def create_pipeline():

        p = Pipeline()

        s = Stage()

        t1 = Task()
        t1.name = 'simulation'
        t1.executable = ['sleep']
        t1.arguments = ['10']

        s.add_tasks(t1)

        p.add_stages(s)

        return p