本文整理汇总了Python中qiita_db.metadata_template.prep_template.PrepTemplate.values方法的典型用法代码示例。如果您正苦于以下问题：Python PrepTemplate.values方法的具体用法？Python PrepTemplate.values怎么用？Python PrepTemplate.values使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类qiita_db.metadata_template.prep_template.PrepTemplate的用法示例。
在下文中一共展示了PrepTemplate.values方法的2个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: test_prep_template_post_req
# 需要导入模块: from qiita_db.metadata_template.prep_template import PrepTemplate [as 别名]
# 或者: from qiita_db.metadata_template.prep_template.PrepTemplate import values [as 别名]
def test_prep_template_post_req(self):
obs = prep_template_post_req(1, '[email protected]', 'update.txt',
'16S', name=" ")
exp = {'status': 'warning',
'message': [
('Some columns required to generate a QIIME-compliant '
'mapping file are not present in the template. A '
'placeholder value (XXQIITAXX) has been used to populate '
'these columns. Missing columns: BarcodeSequence, '
'LinkerPrimerSequence'),
('Some functionality will be disabled due to missing '
'columns:'),
('\tDemultiplexing with multiple input files disabled.: '
'barcode, primer, run_prefix;'),
'\tDemultiplexing disabled.: barcode;',
('\tEBI submission disabled: center_name, '
'experiment_design_description, instrument_model, '
'library_construction_protocol, platform.'),
('See the Templates tutorial for a description of these '
'fields.')],
'file': 'update.txt',
'id': 'ignored in test'}
self.assertItemsEqual(obs['message'].split('\n'), exp['message'])
self.assertEqual(obs['status'], exp['status'])
self.assertEqual(obs['file'], exp['file'])
self.assertIsInstance(obs['id'], int)
# Make sure new prep template added
prep = PrepTemplate(obs['id'])
self.assertEqual(prep.data_type(), '16S')
self.assertEqual([x for x in prep.keys()], ['1.SKD6.640190'])
self.assertEqual([x._to_dict() for x in prep.values()],
[{'new_col': 'new_value'}])
self.assertEqual(prep.name, "Prep information %s" % prep.id)示例2: test_prep_template_post_req
# 需要导入模块: from qiita_db.metadata_template.prep_template import PrepTemplate [as 别名]
# 或者: from qiita_db.metadata_template.prep_template.PrepTemplate import values [as 别名]
def test_prep_template_post_req(self):
new_id = get_count('qiita.prep_template') + 1
obs = prep_template_post_req(1, '[email protected]', 'update.txt',
'16S')
exp = {'status': 'warning',
'message': 'Sample names were already prefixed with the study '
'id.\nSome functionality will be disabled due to '
'missing columns:\n\tDemultiplexing with multiple '
'input files disabled. If your raw data includes '
'multiple raw input files, you will not be able to '
'preprocess your raw data: barcode, primer, '
'run_prefix;\n\tDemultiplexing disabled. You will '
'not be able to preprocess your raw data: barcode, '
'primer;\n\tEBI submission disabled: center_name, '
'experiment_design_description, instrument_model, '
'library_construction_protocol, platform, primer.'
'\nSee the Templates tutorial for a description of '
'these fields.\nSome columns required to generate a '
'QIIME-compliant mapping file are not present in the'
' template. A placeholder value (XXQIITAXX) has been'
' used to populate these columns. Missing columns: '
'BarcodeSequence, LinkerPrimerSequence',
'file': 'update.txt',
'id': new_id}
self.assertItemsEqual(obs['message'].split('\n'),
exp['message'].split('\n'))
self.assertEqual(obs['status'], exp['status'])
self.assertEqual(obs['file'], exp['file'])
self.assertEqual(obs['id'], exp['id'])
# Make sure new prep template added
prep = PrepTemplate(new_id)
self.assertEqual(prep.data_type(), '16S')
self.assertEqual([x for x in prep.keys()], ['1.SKD6.640190'])
self.assertEqual([x._to_dict() for x in prep.values()],
[{'new_col': 'new_value'}])