本文整理汇总了Python中qiita_db.data.ProcessedData.get_filepaths方法的典型用法代码示例。如果您正苦于以下问题：Python ProcessedData.get_filepaths方法的具体用法？Python ProcessedData.get_filepaths怎么用？Python ProcessedData.get_filepaths使用的例子？那么恭喜您, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类qiita_db.data.ProcessedData的用法示例。
在下文中一共展示了ProcessedData.get_filepaths方法的2个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: post
# 需要导入模块: from qiita_db.data import ProcessedData [as 别名]
# 或者: from qiita_db.data.ProcessedData import get_filepaths [as 别名]
def post(self, analysis_id):
command_args = self.get_arguments("commands")
split = [x.split("#") for x in command_args]
analysis = Analysis(analysis_id)
commands = []
# HARD CODED HACKY THING FOR DEMO, FIX Issue #164
fp, mapping_file = mkstemp(suffix="_map_file.txt")
close(fp)
SampleTemplate(1).to_file(mapping_file)
study_fps = {}
for pd in Study(1).processed_data:
processed = ProcessedData(pd)
study_fps[processed.data_type] = processed.get_filepaths()[0][0]
for data_type, command in split:
opts = {
"--otu_table_fp": study_fps[data_type],
"--mapping_fp": mapping_file
}
if command == "Beta Diversity" and data_type in {'16S', '18S'}:
opts["--tree_fp"] = join(get_db_files_base_dir(), "reference",
"gg_97_otus_4feb2011.tre")
elif command == "Beta Diversity":
opts["--parameter_fp"] = join(get_db_files_base_dir(),
"reference", "params_qiime.txt")
Job.create(data_type, command, opts, analysis)
commands.append("%s: %s" % (data_type, command))
user = self.get_current_user()
self.render("analysis_waiting.html", user=user,
aid=analysis_id, aname=analysis.name,
commands=commands)
# fire off analysis run here
# currently synch run so redirect done here. Will remove after demo
run_analysis(user, analysis)示例2: test_get_filepath
# 需要导入模块: from qiita_db.data import ProcessedData [as 别名]
# 或者: from qiita_db.data.ProcessedData import get_filepaths [as 别名]
def test_get_filepath(self):
"""Correctly returns the filepaths to the processed files"""
# check the test data
pd = ProcessedData(1)
obs = pd.get_filepaths()
exp = [(11, join(self.db_test_pd_dir,
'1_study_1001_closed_reference_otu_table.biom'), "biom")]
self.assertEqual(obs, exp)