本文整理汇总了Python中qiime.sdk.Visualization类的典型用法代码示例。如果您正苦于以下问题：Python Visualization类的具体用法？Python Visualization怎么用？Python Visualization使用的例子？那么恭喜您, 这里精选的类代码示例或许可以为您提供帮助。
在下文中一共展示了Visualization类的15个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: test_ne_same_data_different_uuid
def test_ne_same_data_different_uuid(self):
visualization1 = Visualization._from_data_dir(
self.data_dir, self.make_provenance_capture())
visualization2 = Visualization._from_data_dir(
self.data_dir, self.make_provenance_capture())
self.assertNotEqual(visualization1, visualization2)示例2: test_load_and_save
def test_load_and_save(self):
fp1 = os.path.join(self.test_dir.name, 'visualization1.qzv')
fp2 = os.path.join(self.test_dir.name, 'visualization2.qzv')
visualization = Visualization._from_data_dir(self.data_dir,
self.provenance)
visualization.save(fp1)
visualization = Visualization.load(fp1)
# Overwriting its source file works.
visualization.save(fp1)
# Saving to a new file works.
visualization.save(fp2)
with zipfile.ZipFile(fp1, mode='r') as zf:
fps = set(zf.namelist())
expected = {
'visualization1/VERSION',
'visualization1/metadata.yaml',
'visualization1/README.md',
'visualization1/data/index.html',
'visualization1/data/css/style.css'
}
self.assertEqual(fps, expected)
with zipfile.ZipFile(fp2, mode='r') as zf:
fps = set(zf.namelist())
expected = {
'visualization2/VERSION',
'visualization2/metadata.yaml',
'visualization2/README.md',
'visualization2/data/index.html',
'visualization2/data/css/style.css'
}
self.assertEqual(fps, expected)示例3: test_eq_same_uuid
def test_eq_same_uuid(self):
fp = os.path.join(self.test_dir.name, 'visualization.qzv')
visualization1 = Visualization._from_data_dir(
self.data_dir, self.make_provenance_capture())
visualization1.save(fp)
visualization2 = Visualization.load(fp)
self.assertEqual(visualization1, visualization2)示例4: test_load
def test_load(self):
saved_visualization = Visualization._from_data_dir(self.data_dir, None)
fp = os.path.join(self.test_dir.name, 'visualization.qzv')
saved_visualization.save(fp)
visualization = Visualization.load(fp)
self.assertEqual(visualization.type, qiime.core.type.Visualization)
self.assertIsNone(visualization.provenance)
self.assertEqual(visualization.uuid, saved_visualization.uuid)示例5: test_get_index_paths_single_load
def test_get_index_paths_single_load(self):
fp = os.path.join(self.test_dir.name, 'visualization.qzv')
visualization = Visualization._from_data_dir(self.data_dir,
self.provenance)
visualization.save(fp)
visualization = Visualization.load(fp)
actual = visualization.get_index_paths()
expected = {'html': 'data/index.html'}
self.assertEqual(actual, expected)示例6: test_peek
def test_peek(self):
visualization = Visualization._from_data_dir(self.data_dir, None)
fp = os.path.join(self.test_dir.name, 'visualization.qza')
visualization.save(fp)
metadata = Visualization.peek(fp)
self.assertIsInstance(metadata, ResultMetadata)
self.assertEqual(metadata.type, qiime.core.type.Visualization)
self.assertIsNone(metadata.provenance)
self.assertEqual(metadata.uuid, visualization.uuid)示例7: test_ne_different_data_different_uuid
def test_ne_different_data_different_uuid(self):
visualization1 = Visualization._from_data_dir(
self.data_dir, self.make_provenance_capture())
data_dir = os.path.join(self.test_dir.name, 'mc-viz-output1')
os.mkdir(data_dir)
most_common_viz(data_dir,
collections.Counter(range(42)))
visualization2 = Visualization._from_data_dir(
data_dir, self.make_provenance_capture())
self.assertNotEqual(visualization1, visualization2)示例8: test_peek
def test_peek(self):
visualization = Visualization._from_data_dir(
self.data_dir, self.make_provenance_capture())
fp = os.path.join(self.test_dir.name, 'visualization.qzv')
visualization.save(fp)
metadata = Visualization.peek(fp)
self.assertIsInstance(metadata, ResultMetadata)
self.assertEqual(metadata.type, 'Visualization')
self.assertEqual(metadata.uuid, str(visualization.uuid))
self.assertIsNone(metadata.format)示例9: test_roundtrip
def test_roundtrip(self):
fp1 = os.path.join(self.test_dir.name, 'visualization1.qzv')
fp2 = os.path.join(self.test_dir.name, 'visualization2.qzv')
visualization = Visualization._from_data_dir(
self.data_dir, self.make_provenance_capture())
visualization.save(fp1)
visualization1 = Visualization.load(fp1)
visualization1.save(fp2)
visualization2 = Visualization.load(fp2)
self.assertEqual(visualization1.type, visualization2.type)
self.assertEqual(visualization1.uuid, visualization2.uuid)示例10: test_get_index_paths_multiple_html_load
def test_get_index_paths_multiple_html_load(self):
data_dir = os.path.join(self.test_dir.name, 'multi-html-viz1')
os.mkdir(data_dir)
multi_html_viz(data_dir, [1, 42])
fp = os.path.join(self.test_dir.name, 'visualization.qzv')
visualization = Visualization._from_data_dir(data_dir,
self.provenance)
visualization.save(fp)
visualization = Visualization.load(fp)
with self.assertRaises(ValueError):
visualization.get_index_paths()示例11: test_get_index_paths_multiple_load
def test_get_index_paths_multiple_load(self):
data_dir = os.path.join(self.test_dir.name, 'mc-viz-output1')
os.mkdir(data_dir)
most_common_viz(data_dir,
collections.Counter(range(42)))
fp = os.path.join(self.test_dir.name, 'visualization.qzv')
visualization = Visualization._from_data_dir(data_dir,
self.provenance)
visualization.save(fp)
visualization = Visualization.load(fp)
actual = visualization.get_index_paths()
expected = {'html': 'data/index.html',
'tsv': 'data/index.tsv'}
self.assertEqual(actual, expected)示例12: inspect_visualization
def inspect_visualization(uuid):
try:
metadata = Visualization.peek(VISUALIZATIONS[uuid])
except Exception:
abort(404)
return jsonify({'uuid': metadata.uuid, 'type': metadata.type})示例13: test_from_data_dir_with_provenance
def test_from_data_dir_with_provenance(self):
visualization = Visualization._from_data_dir(self.data_dir,
self.provenance)
self.assertEqual(visualization.type, qiime.core.type.Visualization)
self.assertEqual(visualization.provenance, self.provenance)
self.assertIsInstance(visualization.uuid, uuid.UUID)示例14: test_get_index_paths_single_from_data_dir
def test_get_index_paths_single_from_data_dir(self):
visualization = Visualization._from_data_dir(self.data_dir,
self.provenance)
actual = visualization.get_index_paths()
expected = {'html': 'data/index.html'}
self.assertEqual(actual, expected)示例15: test_from_data_dir
def test_from_data_dir(self):
visualization = Visualization._from_data_dir(self.data_dir, None)
self.assertEqual(visualization.type, qiime.core.type.Visualization)
self.assertIsNone(visualization.provenance)
# We don't know what the UUID is because it's generated within
# Visualization._from_data_dir.
self.assertIsInstance(visualization.uuid, uuid.UUID)