本文整理汇总了Python中pysb.simulator.ScipyOdeSimulator.tout方法的典型用法代码示例。如果您正苦于以下问题：Python ScipyOdeSimulator.tout方法的具体用法？Python ScipyOdeSimulator.tout怎么用？Python ScipyOdeSimulator.tout使用的例子？那么, 这里精选的方法代码示例或许可以为您提供帮助。您也可以进一步了解该方法所在类pysb.simulator.ScipyOdeSimulator的用法示例。
在下文中一共展示了ScipyOdeSimulator.tout方法的1个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于系统推荐出更棒的Python代码示例。
示例1: test_simres_dataframe
# 需要导入模块: from pysb.simulator import ScipyOdeSimulator [as 别名]
# 或者: from pysb.simulator.ScipyOdeSimulator import tout [as 别名]
def test_simres_dataframe():
""" Test SimulationResult.dataframe() """
# We don't currently have a Simulator which does multiple simulations at
# a time, so we fake it to test SimulationResult.dataframe()
tspan1 = np.linspace(0, 100, 100)
tspan2 = np.linspace(50, 100, 50)
tspan3 = np.linspace(100, 150, 100)
model = tyson_oscillator.model
sim = ScipyOdeSimulator(model, integrator='lsoda')
simres1 = sim.run(tspan=tspan1)
# Check retrieving a single simulation dataframe
df_single = simres1.dataframe
# Generate multiple trajectories
trajectories1 = simres1.species
trajectories2 = sim.run(tspan=tspan2).species
trajectories3 = sim.run(tspan=tspan3).species
# Try a simulation result with two different tspan lengths
sim.tout = [tspan1, tspan2]
simres = SimulationResult(sim, [trajectories1, trajectories2])
df = simres.dataframe
assert df.shape == (len(tspan1) + len(tspan2),
len(model.species) + len(model.observables))
# Next try a simulation result with two identical tspan lengths, stacked
# into a single 3D array of trajectories
sim.tout = [tspan1, tspan3]
simres2 = SimulationResult(sim, np.stack([trajectories1, trajectories3]))
df2 = simres2.dataframe
assert df2.shape == (len(tspan1) + len(tspan3),
len(model.species) + len(model.observables))