Python pyro.clear_param_store函数代码示例

    def test_elbo_nonreparameterized(self):
        pyro.clear_param_store()

        def model():
            p_latent = pyro.sample("p_latent", dist.beta, self.alpha0, self.beta0)
            pyro.map_data("aaa",
                          self.data, lambda i, x: pyro.observe(
                              "obs_{}".format(i), dist.bernoulli, x, p_latent),
                          batch_size=self.batch_size)
            return p_latent

        def guide():
            alpha_q_log = pyro.param("alpha_q_log",
                                     Variable(self.log_alpha_n.data + 0.17, requires_grad=True))
            beta_q_log = pyro.param("beta_q_log",
                                    Variable(self.log_beta_n.data - 0.143, requires_grad=True))
            alpha_q, beta_q = torch.exp(alpha_q_log), torch.exp(beta_q_log)
            pyro.sample("p_latent", dist.beta, alpha_q, beta_q)
            pyro.map_data("aaa", self.data, lambda i, x: None, batch_size=self.batch_size)

        adam = optim.Adam({"lr": .001, "betas": (0.97, 0.999)})
        svi = SVI(model, guide, adam, loss="ELBO", trace_graph=False)

        for k in range(10001):
            svi.step()

            alpha_error = param_abs_error("alpha_q_log", self.log_alpha_n)
            beta_error = param_abs_error("beta_q_log", self.log_beta_n)

        self.assertEqual(0.0, alpha_error, prec=0.08)
        self.assertEqual(0.0, beta_error, prec=0.08)

    def do_elbo_test(self, reparameterized, n_steps):
        pyro.clear_param_store()
        pt_guide = LogNormalNormalGuide(self.log_mu_n.data + 0.17,
                                        self.log_tau_n.data - 0.143)

        def model():
            mu_latent = pyro.sample("mu_latent", dist.normal,
                                    self.mu0, torch.pow(self.tau0, -0.5))
            sigma = torch.pow(self.tau, -0.5)
            pyro.observe("obs0", dist.lognormal, self.data[0], mu_latent, sigma)
            pyro.observe("obs1", dist.lognormal, self.data[1], mu_latent, sigma)
            return mu_latent

        def guide():
            pyro.module("mymodule", pt_guide)
            mu_q, tau_q = torch.exp(pt_guide.mu_q_log), torch.exp(pt_guide.tau_q_log)
            sigma = torch.pow(tau_q, -0.5)
            pyro.sample("mu_latent", dist.Normal(mu_q, sigma, reparameterized=reparameterized))

        adam = optim.Adam({"lr": .0005, "betas": (0.96, 0.999)})
        svi = SVI(model, guide, adam, loss="ELBO", trace_graph=False)

        for k in range(n_steps):
            svi.step()

        mu_error = param_abs_error("mymodule$$$mu_q_log", self.log_mu_n)
        tau_error = param_abs_error("mymodule$$$tau_q_log", self.log_tau_n)
        self.assertEqual(0.0, mu_error, prec=0.07)
        self.assertEqual(0.0, tau_error, prec=0.07)

def test_module_nn(nn_module):
    pyro.clear_param_store()
    nn_module = nn_module()
    assert pyro.get_param_store()._params == {}
    pyro.module("module", nn_module)
    for name in pyro.get_param_store().get_all_param_names():
        assert pyro.params.user_param_name(name) in nn_module.state_dict().keys()

def test_gmm_iter_discrete_traces(data_size, graph_type, model):
    pyro.clear_param_store()
    data = torch.arange(0, data_size)
    model = config_enumerate(model)
    traces = list(iter_discrete_traces(graph_type, model, data=data, verbose=True))
    # This non-vectorized version is exponential in data_size:
    assert len(traces) == 2**data_size

def main(args):
    pyro.clear_param_store()
    data = build_linear_dataset(N, p)
    if args.cuda:
        # make tensors and modules CUDA
        data = data.cuda()
        softplus.cuda()
        regression_model.cuda()
    for j in range(args.num_epochs):
        if args.batch_size == N:
            # use the entire data set
            epoch_loss = svi.step(data)
        else:
            # mini batch
            epoch_loss = 0.0
            perm = torch.randperm(N) if not args.cuda else torch.randperm(N).cuda()
            # shuffle data
            data = data[perm]
            # get indices of each batch
            all_batches = get_batch_indices(N, args.batch_size)
            for ix, batch_start in enumerate(all_batches[:-1]):
                batch_end = all_batches[ix + 1]
                batch_data = data[batch_start: batch_end]
                epoch_loss += svi.step(batch_data)
        if j % 100 == 0:
            print("epoch avg loss {}".format(epoch_loss/float(N)))

def test_bern_elbo_gradient(enum_discrete, trace_graph):
    pyro.clear_param_store()
    num_particles = 2000

    def model():
        p = Variable(torch.Tensor([0.25]))
        pyro.sample("z", dist.Bernoulli(p))

    def guide():
        p = pyro.param("p", Variable(torch.Tensor([0.5]), requires_grad=True))
        pyro.sample("z", dist.Bernoulli(p))

    print("Computing gradients using surrogate loss")
    Elbo = TraceGraph_ELBO if trace_graph else Trace_ELBO
    elbo = Elbo(enum_discrete=enum_discrete,
                num_particles=(1 if enum_discrete else num_particles))
    with xfail_if_not_implemented():
        elbo.loss_and_grads(model, guide)
    params = sorted(pyro.get_param_store().get_all_param_names())
    assert params, "no params found"
    actual_grads = {name: pyro.param(name).grad.clone() for name in params}

    print("Computing gradients using finite difference")
    elbo = Trace_ELBO(num_particles=num_particles)
    expected_grads = finite_difference(lambda: elbo.loss(model, guide))

    for name in params:
        print("{} {}{}{}".format(name, "-" * 30, actual_grads[name].data,
                                 expected_grads[name].data))
    assert_equal(actual_grads, expected_grads, prec=0.1)

def test_iter_discrete_traces_vector(graph_type):
    pyro.clear_param_store()

    def model():
        p = pyro.param("p", Variable(torch.Tensor([[0.05], [0.15]])))
        ps = pyro.param("ps", Variable(torch.Tensor([[0.1, 0.2, 0.3, 0.4],
                                                     [0.4, 0.3, 0.2, 0.1]])))
        x = pyro.sample("x", dist.Bernoulli(p))
        y = pyro.sample("y", dist.Categorical(ps, one_hot=False))
        assert x.size() == (2, 1)
        assert y.size() == (2, 1)
        return dict(x=x, y=y)

    traces = list(iter_discrete_traces(graph_type, model))

    p = pyro.param("p").data
    ps = pyro.param("ps").data
    assert len(traces) == 2 * ps.size(-1)

    for scale, trace in traces:
        x = trace.nodes["x"]["value"].data.squeeze().long()[0]
        y = trace.nodes["y"]["value"].data.squeeze().long()[0]
        expected_scale = torch.exp(dist.Bernoulli(p).log_pdf(x) *
                                   dist.Categorical(ps, one_hot=False).log_pdf(y))
        expected_scale = expected_scale.data.view(-1)[0]
        assert_equal(scale, expected_scale)

def assert_ok(model, guide, elbo):
    """
    Assert that inference works without warnings or errors.
    """
    pyro.clear_param_store()
    inference = SVI(model, guide, Adam({"lr": 1e-6}), elbo)
    inference.step()

def test_elbo_bern(quantity, enumerate1):
    pyro.clear_param_store()
    num_particles = 1 if enumerate1 else 10000
    prec = 0.001 if enumerate1 else 0.1
    q = pyro.param("q", torch.tensor(0.5, requires_grad=True))
    kl = kl_divergence(dist.Bernoulli(q), dist.Bernoulli(0.25))

    def model():
        with pyro.iarange("particles", num_particles):
            pyro.sample("z", dist.Bernoulli(0.25).expand_by([num_particles]))

    @config_enumerate(default=enumerate1)
    def guide():
        q = pyro.param("q")
        with pyro.iarange("particles", num_particles):
            pyro.sample("z", dist.Bernoulli(q).expand_by([num_particles]))

    elbo = TraceEnum_ELBO(max_iarange_nesting=1,
                          strict_enumeration_warning=any([enumerate1]))

    if quantity == "loss":
        actual = elbo.loss(model, guide) / num_particles
        expected = kl.item()
        assert_equal(actual, expected, prec=prec, msg="".join([
            "\nexpected = {}".format(expected),
            "\n  actual = {}".format(actual),
        ]))
    else:
        elbo.loss_and_grads(model, guide)
        actual = q.grad / num_particles
        expected = grad(kl, [q])[0]
        assert_equal(actual, expected, prec=prec, msg="".join([
            "\nexpected = {}".format(expected.detach().cpu().numpy()),
            "\n  actual = {}".format(actual.detach().cpu().numpy()),
        ]))

def test_dynamic_lr(scheduler, num_steps):
    pyro.clear_param_store()

    def model():
        sample = pyro.sample('latent', Normal(torch.tensor(0.), torch.tensor(0.3)))
        return pyro.sample('obs', Normal(sample, torch.tensor(0.2)), obs=torch.tensor(0.1))

    def guide():
        loc = pyro.param('loc', torch.tensor(0.))
        scale = pyro.param('scale', torch.tensor(0.5))
        pyro.sample('latent', Normal(loc, scale))

    svi = SVI(model, guide, scheduler, loss=TraceGraph_ELBO())
    for epoch in range(2):
        scheduler.set_epoch(epoch)
        for _ in range(num_steps):
            svi.step()
        if epoch == 1:
            loc = pyro.param('loc')
            scale = pyro.param('scale')
            opt = scheduler.optim_objs[loc].optimizer
            assert opt.state_dict()['param_groups'][0]['lr'] == 0.02
            assert opt.state_dict()['param_groups'][0]['initial_lr'] == 0.01
            opt = scheduler.optim_objs[scale].optimizer
            assert opt.state_dict()['param_groups'][0]['lr'] == 0.02
            assert opt.state_dict()['param_groups'][0]['initial_lr'] == 0.01

def test_dirichlet_bernoulli(Elbo, vectorized):
    pyro.clear_param_store()
    data = torch.tensor([1.0] * 6 + [0.0] * 4)

    def model1(data):
        concentration0 = torch.tensor([10.0, 10.0])
        f = pyro.sample("latent_fairness", dist.Dirichlet(concentration0))[1]
        for i in pyro.irange("irange", len(data)):
            pyro.sample("obs_{}".format(i), dist.Bernoulli(f), obs=data[i])

    def model2(data):
        concentration0 = torch.tensor([10.0, 10.0])
        f = pyro.sample("latent_fairness", dist.Dirichlet(concentration0))[1]
        pyro.sample("obs", dist.Bernoulli(f).expand_by(data.shape).independent(1),
                    obs=data)

    model = model2 if vectorized else model1

    def guide(data):
        concentration_q = pyro.param("concentration_q", torch.tensor([15.0, 15.0]),
                                     constraint=constraints.positive)
        pyro.sample("latent_fairness", dist.Dirichlet(concentration_q))

    elbo = Elbo(num_particles=7, strict_enumeration_warning=False)
    optim = Adam({"lr": 0.0005, "betas": (0.90, 0.999)})
    svi = SVI(model, guide, optim, elbo)
    for step in range(40):
        svi.step(data)

def test_gmm_batch_iter_discrete_traces(model, data_size, graph_type):
    pyro.clear_param_store()
    data = torch.arange(0, data_size)
    model = config_enumerate(model)
    traces = list(iter_discrete_traces(graph_type, model, data=data))
    # This vectorized version is independent of data_size:
    assert len(traces) == 2

 def test_random_module(self):
     pyro.clear_param_store()
     lifted_tr = poutine.trace(pyro.random_module("name", self.model, prior=self.prior)).get_trace()
     for name in lifted_tr.nodes.keys():
         if lifted_tr.nodes[name]["type"] == "param":
             assert lifted_tr.nodes[name]["type"] == "sample"
             assert not lifted_tr.nodes[name]["is_observed"]

def test_elbo_hmm_in_guide(enumerate1, num_steps):
    pyro.clear_param_store()
    data = torch.ones(num_steps)
    init_probs = torch.tensor([0.5, 0.5])

    def model(data):
        transition_probs = pyro.param("transition_probs",
                                      torch.tensor([[0.75, 0.25], [0.25, 0.75]]),
                                      constraint=constraints.simplex)
        emission_probs = pyro.param("emission_probs",
                                    torch.tensor([[0.75, 0.25], [0.25, 0.75]]),
                                    constraint=constraints.simplex)

        x = None
        for i, y in enumerate(data):
            probs = init_probs if x is None else transition_probs[x]
            x = pyro.sample("x_{}".format(i), dist.Categorical(probs))
            pyro.sample("y_{}".format(i), dist.Categorical(emission_probs[x]), obs=y)

    @config_enumerate(default=enumerate1)
    def guide(data):
        transition_probs = pyro.param("transition_probs",
                                      torch.tensor([[0.75, 0.25], [0.25, 0.75]]),
                                      constraint=constraints.simplex)
        x = None
        for i, y in enumerate(data):
            probs = init_probs if x is None else transition_probs[x]
            x = pyro.sample("x_{}".format(i), dist.Categorical(probs))

    elbo = TraceEnum_ELBO(max_iarange_nesting=0)
    elbo.loss_and_grads(model, guide, data)

    # These golden values simply test agreement between parallel and sequential.
    expected_grads = {
        2: {
            "transition_probs": [[0.1029949, -0.1029949], [0.1029949, -0.1029949]],
            "emission_probs": [[0.75, -0.75], [0.25, -0.25]],
        },
        3: {
            "transition_probs": [[0.25748726, -0.25748726], [0.25748726, -0.25748726]],
            "emission_probs": [[1.125, -1.125], [0.375, -0.375]],
        },
        10: {
            "transition_probs": [[1.64832076, -1.64832076], [1.64832076, -1.64832076]],
            "emission_probs": [[3.75, -3.75], [1.25, -1.25]],
        },
        20: {
            "transition_probs": [[3.70781687, -3.70781687], [3.70781687, -3.70781687]],
            "emission_probs": [[7.5, -7.5], [2.5, -2.5]],
        },
    }

    for name, value in pyro.get_param_store().named_parameters():
        actual = value.grad
        expected = torch.tensor(expected_grads[num_steps][name])
        assert_equal(actual, expected, msg=''.join([
            '\nexpected {}.grad = {}'.format(name, expected.cpu().numpy()),
            '\n  actual {}.grad = {}'.format(name, actual.detach().cpu().numpy()),
        ]))

def assert_error(model, guide, elbo):
    """
    Assert that inference fails with an error.
    """
    pyro.clear_param_store()
    inference = SVI(model,  guide, Adam({"lr": 1e-6}), elbo)
    with pytest.raises((NotImplementedError, UserWarning, KeyError, ValueError, RuntimeError)):
        inference.step()